Regulation of nuclear pre-mRNA domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g29400 FvH4_1g29400 FvH4_1g29400 |
| malus_domestica | MD12G1014900.v1.1 MD14G1012500.v1.1 |
| prunus_persica | Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1 |
| pyrus_communis | pycom12g01210 pycom14g01070 |
| rosa_chinensis | RchiOBHm_Chr3g0495551 |
| rosa_laevigata | RLG00000022610 RLG00000022611 RLG00000022612 |
| rosa_multiflora | Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00390310 |
| rosa_rugosa | Rorug03G0274000 Rorug03G0274100 |
| rosa_samantha | Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600 |
| rosa_wichuraiana | Rw3G028130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1643 |
| AciI | CCGC | 6 cut(s) | 525, 588, 1385, 1391, 1562, 1661 |
| AclWI | GGATC | 2 cut(s) | 664, 1498 |
| AcsI | RAATTY | 3 cut(s) | 236, 248, 943 |
| AcuI | CTGAAG | 4 cut(s) | 296, 758, 1152, 1164 |
| AfaI | GTAC | 3 cut(s) | 594, 696, 1713 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1643 |
| AjnI | CCWGG | 1 cut(s) | 1552 |
| Alw26I | GTCTC | 4 cut(s) | 93, 369, 856, 1463 |
| AlwI | GGATC | 2 cut(s) | 664, 1498 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1052, 1055, 1630, 1643 |
| Ama87I | CYCGRG | 1 cut(s) | 366 |
| AoxI | GGCC | 2 cut(s) | 1211, 1550 |
| ApoI | RAATTY | 3 cut(s) | 236, 248, 943 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 248, 436, 771, 801 |
| AspS9I | GGNCC | 3 cut(s) | 778, 1212, 1379 |
| AsuC2I | CCSGG | 1 cut(s) | 878 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 308 |
| AsuNHI | GCTAGC | 1 cut(s) | 1072 |
| AvaI | CYCGRG | 1 cut(s) | 366 |
| AvaII | GGWCC | 2 cut(s) | 778, 1379 |
| BbvCI | CCTCAGC | 3 cut(s) | 978, 1602, 1608 |
| BccI | CCATC | 3 cut(s) | 293, 388, 1414 |
| BceAI | ACGGC | 1 cut(s) | 1226 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 806, 840 |
| BciT130I | CCWGG | 1 cut(s) | 1554 |
| BcnI | CCSGG | 1 cut(s) | 878 |
| BcoDI | GTCTC | 4 cut(s) | 93, 369, 856, 1463 |
| BfaI | CTAG | 1 cut(s) | 1073 |
| BfmI | CTRYAG | 2 cut(s) | 267, 1631 |
| BglII | AGATCT | 1 cut(s) | 740 |
| BlpI | GCTNAGC | 1 cut(s) | 1068 |
| Bme1390I | CCNGG | 2 cut(s) | 878, 1554 |
| Bme18I | GGWCC | 2 cut(s) | 778, 1379 |
| BmeT110I | CYCGRG | 1 cut(s) | 366 |
| BmgT120I | GGNCC | 3 cut(s) | 778, 1212, 1379 |
| BmrFI | CCNGG | 2 cut(s) | 878, 1554 |
| BmrI | ACTGGG | 1 cut(s) | 854 |
| BmsI | GCATC | 6 cut(s) | 457, 978, 1088, 1247, 1353, 1421 |
| BmtI | GCTAGC | 1 cut(s) | 1076 |
| BmuI | ACTGGG | 1 cut(s) | 854 |
| BpmI | CTGGAG | 3 cut(s) | 1185, 1383, 1665 |
| Bpu10I | CCTNAGC | 3 cut(s) | 978, 1602, 1608 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1068 |
| BpuEI | CTTGAG | 1 cut(s) | 1241 |
| BpuMI | CCSGG | 1 cut(s) | 878 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1489 |
| BsaI | GGTCTC | 2 cut(s) | 369, 1463 |
| BsaJI | CCNNGG | 2 cut(s) | 747, 876 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1643 |
| Bse118I | RCCGGY | 1 cut(s) | 1327 |
| Bse1I | ACTGG | 7 cut(s) | 333, 495, 849, 970, 1156, 1648, 1709 |
| Bse3DI | GCAATG | 2 cut(s) | 433, 904 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1489 |
| BseBI | CCWGG | 1 cut(s) | 1554 |
| BseDI | CCNNGG | 2 cut(s) | 747, 876 |
| BseGI | GGATG | 4 cut(s) | 472, 676, 969, 1118 |
| BseJI | GATNNNNATC | 1 cut(s) | 1489 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1643 |
| BseMI | GCAATG | 2 cut(s) | 433, 904 |
| BseMII | CTCAG | 6 cut(s) | 489, 662, 824, 992, 1616, 1622 |
| BseNI | ACTGG | 7 cut(s) | 333, 495, 849, 970, 1156, 1648, 1709 |
| BseRI | GAGGAG | 1 cut(s) | 1275 |
| BseYI | CCCAGC | 1 cut(s) | 1663 |
| BsgI | GTGCAG | 1 cut(s) | 977 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1661 |
| BshFI | GGCC | 2 cut(s) | 1213, 1552 |
| BsiEI | CGRYCG | 1 cut(s) | 1661 |
| BsiHKCI | CYCGRG | 1 cut(s) | 366 |
| BsiSI | CCGG | 2 cut(s) | 878, 1328 |
| BslFI | GGGAC | 2 cut(s) | 859, 1333 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1643 |
| BsmAI | GTCTC | 4 cut(s) | 93, 369, 856, 1463 |
| BsmFI | GGGAC | 2 cut(s) | 859, 1333 |
| BsnI | GGCC | 2 cut(s) | 1213, 1552 |
| Bso31I | GGTCTC | 2 cut(s) | 369, 1463 |
| BsoBI | CYCGRG | 1 cut(s) | 366 |
| Bsp1407I | TGTACA | 1 cut(s) | 592 |
| Bsp143I | GATC | 3 cut(s) | 656, 740, 1490 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1068 |
| BspACI | CCGC | 6 cut(s) | 525, 588, 1385, 1391, 1562, 1661 |
| BspANI | GGCC | 2 cut(s) | 1213, 1552 |
| BspCNI | CTCAG | 6 cut(s) | 488, 661, 823, 991, 1615, 1621 |
| BspMAI | CTGCAG | 2 cut(s) | 271, 1635 |
| BspOI | GCTAGC | 1 cut(s) | 1076 |
| BspPI | GGATC | 2 cut(s) | 664, 1498 |
| BspTNI | GGTCTC | 2 cut(s) | 369, 1463 |
| BsrDI | GCAATG | 2 cut(s) | 433, 904 |
| BsrFI | RCCGGY | 1 cut(s) | 1327 |
| BsrGI | TGTACA | 1 cut(s) | 592 |
| BsrI | ACTGG | 7 cut(s) | 333, 495, 849, 970, 1156, 1648, 1709 |
| BssAI | RCCGGY | 1 cut(s) | 1327 |
| BssECI | CCNNGG | 2 cut(s) | 747, 876 |
| BssMI | GATC | 3 cut(s) | 656, 740, 1490 |
| BssT1I | CCWWGG | 1 cut(s) | 747 |
| Bst2UI | CCWGG | 1 cut(s) | 1554 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 218, 1722 |
| Bst6I | CTCTTC | 2 cut(s) | 455, 1026 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1052, 1055, 1418 |
| BstAUI | TGTACA | 1 cut(s) | 592 |
| BstC8I | GCNNGC | 2 cut(s) | 1074, 1638 |
| BstDEI | CTNAG | 8 cut(s) | 475, 554, 648, 810, 978, 1068, 1602, 1608 |
| BstF5I | GGATG | 4 cut(s) | 472, 676, 969, 1118 |
| BstKTI | GATC | 3 cut(s) | 659, 743, 1493 |
| BstMAI | GTCTC | 4 cut(s) | 93, 369, 856, 1463 |
| BstMBI | GATC | 3 cut(s) | 656, 740, 1490 |
| BstMCI | CGRYCG | 1 cut(s) | 1661 |
| BstNI | CCWGG | 1 cut(s) | 1554 |
| BstNSI | RCATGY | 2 cut(s) | 284, 1322 |
| BstSCI | CCNGG | 2 cut(s) | 876, 1552 |
| BstSFI | CTRYAG | 2 cut(s) | 267, 1631 |
| BstX2I | RGATCY | 2 cut(s) | 656, 740 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 328, 1454 |
| BstYI | RGATCY | 2 cut(s) | 656, 740 |
| BsuRI | GGCC | 2 cut(s) | 1213, 1552 |
| BtsCI | GGATG | 4 cut(s) | 472, 676, 969, 1118 |
| BtsI | GCAGTG | 1 cut(s) | 238 |
| BtsIMutI | CAGTG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 2 cut(s) | 1074, 1638 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1052, 1055, 1630, 1643 |
| Cfr10I | RCCGGY | 1 cut(s) | 1327 |
| Cfr13I | GGNCC | 3 cut(s) | 778, 1212, 1379 |
| Csp6I | GTAC | 3 cut(s) | 593, 695, 1712 |
| CviQI | GTAC | 3 cut(s) | 593, 695, 1712 |
| DdeI | CTNAG | 8 cut(s) | 475, 554, 648, 810, 978, 1068, 1602, 1608 |
| DpnI | GATC | 3 cut(s) | 658, 742, 1492 |
| DpnII | GATC | 3 cut(s) | 656, 740, 1490 |
| DraI | TTTAAA | 1 cut(s) | 678 |
| Eam1104I | CTCTTC | 2 cut(s) | 455, 1026 |
| EarI | CTCTTC | 2 cut(s) | 455, 1026 |
| Eco130I | CCWWGG | 1 cut(s) | 747 |
| Eco31I | GGTCTC | 2 cut(s) | 369, 1463 |
| Eco47I | GGWCC | 2 cut(s) | 778, 1379 |
| Eco57I | CTGAAG | 4 cut(s) | 296, 758, 1152, 1164 |
| Eco88I | CYCGRG | 1 cut(s) | 366 |
| EcoRI | GAATTC | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 1552 |
| EcoT14I | CCWWGG | 1 cut(s) | 747 |
| ErhI | CCWWGG | 1 cut(s) | 747 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 537, 569, 681, 713, 756, 788 |
| FaqI | GGGAC | 2 cut(s) | 859, 1333 |
| FauI | CCCGC | 1 cut(s) | 1398 |
| FokI | GGATG | 4 cut(s) | 479, 683, 956, 1105 |
| FspBI | CTAG | 1 cut(s) | 1073 |
| GsaI | CCCAGC | 1 cut(s) | 1667 |
| GsuI | CTGGAG | 3 cut(s) | 1185, 1383, 1665 |
| HaeIII | GGCC | 2 cut(s) | 1213, 1552 |
| HapII | CCGG | 2 cut(s) | 878, 1328 |
| HincII | GTYRAC | 3 cut(s) | 334, 886, 1104 |
| HindII | GTYRAC | 3 cut(s) | 334, 886, 1104 |
| HindIII | AAGCTT | 2 cut(s) | 15, 1217 |
| HinfI | GANTC | 9 cut(s) | 80, 376, 403, 563, 637, 785, 920, 1435, 1674 |
| HpaI | GTTAAC | 1 cut(s) | 886 |
| HpaII | CCGG | 2 cut(s) | 878, 1328 |
| HphI | GGTGA | 2 cut(s) | 98, 308 |
| Hpy166II | GTNNAC | 5 cut(s) | 65, 334, 886, 1104, 1382 |
| Hpy188I | TCNGA | 4 cut(s) | 276, 790, 834, 1243 |
| Hpy188III | TCNNGA | 7 cut(s) | 253, 366, 451, 542, 776, 1202, 1256 |
| Hpy8I | GTNNAC | 5 cut(s) | 65, 334, 886, 1104, 1382 |
| HpyAV | CCTTC | 2 cut(s) | 272, 346 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 218, 1722 |
| HpyCH4IV | ACGT | 2 cut(s) | 726, 1163 |
| HpyF3I | CTNAG | 8 cut(s) | 475, 554, 648, 810, 978, 1068, 1602, 1608 |
| HpySE526I | ACGT | 2 cut(s) | 726, 1163 |
| KspAI | GTTAAC | 1 cut(s) | 886 |
| Kzo9I | GATC | 3 cut(s) | 656, 740, 1490 |
| LweI | GCATC | 6 cut(s) | 457, 978, 1088, 1247, 1353, 1421 |
| MaeI | CTAG | 1 cut(s) | 1073 |
| MaeII | ACGT | 2 cut(s) | 726, 1163 |
| MaeIII | GTNAC | 2 cut(s) | 5, 901 |
| MalI | GATC | 3 cut(s) | 658, 742, 1492 |
| MboI | GATC | 3 cut(s) | 656, 740, 1490 |
| MflI | RGATCY | 2 cut(s) | 656, 740 |
| MluCI | AATT | 6 cut(s) | 154, 236, 248, 483, 609, 943 |
| MlyI | GAGTC | 2 cut(s) | 385, 631 |
| MmeI | TCCRAC | 3 cut(s) | 478, 648, 1010 |
| MroXI | GAANNNNTTC | 4 cut(s) | 248, 436, 771, 801 |
| MseI | TTAA | 8 cut(s) | 381, 486, 677, 699, 762, 855, 885, 1248 |
| MslI | CAYNNNNRTG | 3 cut(s) | 285, 555, 908 |
| MspA1I | CMGCKG | 5 cut(s) | 590, 1052, 1169, 1630, 1663 |
| MspI | CCGG | 2 cut(s) | 878, 1328 |
| MspR9I | CCNGG | 2 cut(s) | 878, 1554 |
| MvaI | CCWGG | 1 cut(s) | 1554 |
| NciI | CCSGG | 1 cut(s) | 878 |
| NdeII | GATC | 3 cut(s) | 656, 740, 1490 |
| NheI | GCTAGC | 1 cut(s) | 1072 |
| NmuCI | GTSAC | 1 cut(s) | 901 |
| NspI | RCATGY | 2 cut(s) | 284, 1322 |
| PaeR7I | CTCGAG | 1 cut(s) | 366 |
| PdmI | GAANNNNTTC | 4 cut(s) | 248, 436, 771, 801 |
| PfeI | GAWTC | 7 cut(s) | 80, 403, 563, 785, 920, 1435, 1674 |
| PflFI | GACNNNGTC | 1 cut(s) | 871 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1643 |
| PleI | GAGTC | 2 cut(s) | 384, 631 |
| PpsI | GAGTC | 2 cut(s) | 384, 631 |
| Psp6I | CCWGG | 1 cut(s) | 1552 |
| PspFI | CCCAGC | 1 cut(s) | 1663 |
| PspGI | CCWGG | 1 cut(s) | 1552 |
| PspPI | GGNCC | 3 cut(s) | 778, 1212, 1379 |
| PstI | CTGCAG | 2 cut(s) | 271, 1635 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1052, 1055, 1630, 1643 |
| PsuI | RGATCY | 2 cut(s) | 656, 740 |
| PsyI | GACNNNGTC | 1 cut(s) | 871 |
| PvuII | CAGCTG | 3 cut(s) | 1052, 1169, 1630 |
| RsaI | GTAC | 3 cut(s) | 594, 696, 1713 |
| RsaNI | GTAC | 3 cut(s) | 593, 695, 1712 |
| RseI | CAYNNNNRTG | 3 cut(s) | 285, 555, 908 |
| SaqAI | TTAA | 8 cut(s) | 381, 486, 677, 699, 762, 855, 885, 1248 |
| Sau3AI | GATC | 3 cut(s) | 656, 740, 1490 |
| Sau96I | GGNCC | 3 cut(s) | 778, 1212, 1379 |
| SchI | GAGTC | 2 cut(s) | 385, 631 |
| ScrFI | CCNGG | 2 cut(s) | 878, 1554 |
| SfaNI | GCATC | 6 cut(s) | 457, 978, 1088, 1247, 1353, 1421 |
| SfcI | CTRYAG | 2 cut(s) | 267, 1631 |
| Sfr274I | CTCGAG | 1 cut(s) | 366 |
| SinI | GGWCC | 2 cut(s) | 778, 1379 |
| SlaI | CTCGAG | 1 cut(s) | 366 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 285, 555, 908 |
| SmlI | CTYRAG | 2 cut(s) | 366, 1220 |
| SmoI | CTYRAG | 2 cut(s) | 366, 1220 |
| Sse9I | AATT | 6 cut(s) | 154, 236, 248, 483, 609, 943 |
| SsiI | CCGC | 6 cut(s) | 525, 588, 1385, 1391, 1562, 1661 |
| SspI | AATATT | 1 cut(s) | 853 |
| SspMI | CTAG | 1 cut(s) | 1073 |
| StyD4I | CCNGG | 2 cut(s) | 876, 1552 |
| StyI | CCWWGG | 1 cut(s) | 747 |
| TaaI | ACNGT | 3 cut(s) | 62, 218, 1722 |
| TaiI | ACGT | 2 cut(s) | 729, 1166 |
| TaqI | TCGA | 5 cut(s) | 367, 826, 1547, 1657, 1717 |
| TasI | AATT | 6 cut(s) | 154, 236, 248, 483, 609, 943 |
| TatI | WGTACW | 2 cut(s) | 592, 694 |
| TauI | GCSGC | 2 cut(s) | 590, 1564 |
| TfiI | GAWTC | 7 cut(s) | 80, 403, 563, 785, 920, 1435, 1674 |
| Tru1I | TTAA | 8 cut(s) | 381, 486, 677, 699, 762, 855, 885, 1248 |
| Tru9I | TTAA | 8 cut(s) | 381, 486, 677, 699, 762, 855, 885, 1248 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TseFI | GTSAC | 1 cut(s) | 901 |
| Tsp45I | GTSAC | 1 cut(s) | 901 |
| TspDTI | ATGAA | 6 cut(s) | 261, 303, 402, 630, 1044, 1107 |
| TspGWI | ACGGA | 2 cut(s) | 39, 1497 |
| TspRI | CASTG | 1 cut(s) | 238 |
| Tth111I | GACNNNGTC | 1 cut(s) | 871 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1643 |
| VpaK11BI | GGWCC | 2 cut(s) | 778, 1379 |
| XapI | RAATTY | 3 cut(s) | 236, 248, 943 |
| XceI | RCATGY | 2 cut(s) | 284, 1322 |
| XhoI | CTCGAG | 1 cut(s) | 366 |
| XmnI | GAANNNNTTC | 4 cut(s) | 248, 436, 771, 801 |
| XspI | CTAG | 1 cut(s) | 1073 |