Rh3AG321900

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008113
Physical Location & Seq
Forward (+)
44852278 .. 44867452
15175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG321900.1

Sequence Viewer

Length: 1749 bp
ATGGAGAAGTGGAGTTGTAGCATCTCCTCGTGTCAGGCCGACAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACTCCAAGTGACCTCTGCATCCGCTGCTCTGGGGATGTAAAAAAACTGAGCAACAGCAGGATGAGCAACAACGAAGGTTTTGACGGACATATACTGTCTGAGAAGCTCTCTAAACTCAACAATTCACAACAAAGCATCGAGTCTCTTTCTCGTTGGTGTATTTCTCATCGGAAGAAAGCAAAGCAGATTGTTGAAACATGGGACAAGTATTTCAATTCTTCCCAAAAAGATCAGCGTGTGTCTTTTCTATATCTGGCGAATGACATATTGCAAAACAGTAGGCGAAAGGGCAGTGAGTTTGTGAATGAATTTTGGAAAGTTCTTCCTGCAGCTCTCAAGCATGTTTATGAAAATGGTGATGACCACGGAAAGAAAGCTGCCATGAGACTGGTTGACATATGGGATGAAAGGAAGGTTTTTGGTTCTCGAGGGCAAACTCTTAAAGATGAAATGACGGGAAAGAATCCTCCTCCACCTATAAGCAACGGAAAGATTTCAAATCCTATCAAGATAGTGAAGAGGGATGCACACTCAGTTAGAATCAAATTGGCTGTTGGAGGTCTACCAGAAAAGATACTCACCGCACTTCAACCTGTTCTTGATGAACATGCTAGCGAAGAAGCTGCTTTAAACAAGTGTAGTGTTGCTGCACATTATGTGGGTAAAATAGAGGAAGAGGTTGAAAACAACTTGACTCAAGGGACTCAGCAGAGATCTACATTGTTGGATGATCTGAAGGAGCAGGAAGATGTACTTAATCTATCTATTGGACAGCTTGAAGCTGTGGCAGCAACAAGATCTGCCTTGGTTTTGCAGCTTAAAGAAGCACTTCAGGACCAAGAACCAAAGCTGGAAGCTGTTCGCACTCAGTTACAAGTTACACAACATCAGATTGAGAAAGTAAGCAATATTAGAAGGAGACTGTCTTTGTCGCCACAAAGCAATGTCAGTAACATGACAGCTGAATCTACAAGGATGTTAGAACCAACTGGCATCCAATCGCAGCCTCCTAACCAACCTGTGATTTCTTTTGCTCCTGTCAAAATCACCGATGAAGAGAACAAGAAAGCAGCAGCAGCTGCTGTTGCTGCTAAACTTGCTGCATCCACATCCTCTGCACAAATGTTGACTTCTGTTCTTTCTTCTCTGGTTGCTGAAGAAGCTGCATCTATGTTTTCTCCAGAAAAAAGGCAGAAACTTGAGAAATCTATGTCTGTTTCTGATGGCAATGCTGAAGTTGGCAGTGCAGCCTATTTTACCCCTCTACAACAGCAAACAATGACTAGTGTGCCACTGGCACCATCAACAAGCATGCAAACTATGTCCCAAGCTAACCAGATGCAAAGTCCTTTTGGTCCGCCCCCACTGCCCCCAGCACCATCTCAATCTTCTGCAACTCCACCATCGAATCAGTATGTCCAAACTGGTGGCCTTATGGTGGGTGTAATGCCTTATGGATATGGATCAAATAATTTGCCACCTCCGCCCCCCATGCCTCCACATATTTCAATGGGTCTGTCGAGGCCCACGCAACCCCAACAACAGTCACTGCCCCAGCAGCAGCAACAGCAACAGCAGGTGCAGCCAGCTAGTGGAGGTTATTATCGGCCGTTGGGTATGGGGTTCTATGGGCAAAGTAATCAGTCAGCTTCACAGCCAGTTCCTCGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

582

Amino Acids

63.92

Weight (kDa)

9.32

Isoelectric Point (pI)

63.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 56 - 167 4.6e-40 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1642
Acc36I ACCTGC 1 cut(s) 1642
AccB1I GGYRCC 1 cut(s) 1372
AccB7I CCANNNNNTGG 1 cut(s) 1667
AccI GTMKAC 1 cut(s) 637
AciI CCGC 4 cut(s) 97, 657, 1433, 1559
AclWI GGATC 1 cut(s) 1546
AcoI YGGCCR 1 cut(s) 1682
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 4 cut(s) 830, 890, 1251, 1329
AfaI GTAC 1 cut(s) 828
AfiI CCNNNNNNNGG 2 cut(s) 1513, 1667
AgsI TTSAA 7 cut(s) 269, 289, 573, 665, 758, 854, 1584
AhlI ACTAGT 1 cut(s) 1358
Alw26I GTCTC 3 cut(s) 222, 454, 988
AlwI GGATC 1 cut(s) 1546
AlwNI CAGNNNCTG 3 cut(s) 1154, 1157, 1624
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 4 cut(s) 36, 1504, 1598, 1682
ApoI RAATTY 1 cut(s) 383
Asp700I GAANNNNTTC 3 cut(s) 568, 903, 933
AspS9I GGNCC 3 cut(s) 910, 1430, 1599
AsuHPI GGTGA 3 cut(s) 443, 646, 1114
AsuNHI GCTAGC 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 2 cut(s) 910, 1430
BanI GGYRCC 1 cut(s) 1372
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 80
BccI CCATC 4 cut(s) 1292, 1384, 1462, 1486
BceAI ACGGC 1 cut(s) 1669
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BcoDI GTCTC 3 cut(s) 222, 454, 988
BcuI ACTAGT 1 cut(s) 1358
BfaI CTAG 3 cut(s) 687, 1359, 1665
BfmI CTRYAG 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 1642
BglII AGATCT 2 cut(s) 788, 872
Bme18I GGWCC 2 cut(s) 910, 1430
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 3 cut(s) 910, 1430, 1599
BmiI GGNNCC 1 cut(s) 1374
BmsI GCATC 8 cut(s) 30, 102, 219, 589, 1077, 1187, 1250, 1404
BmtI GCTAGC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 1239
BpuEI CTTGAG 3 cut(s) 395, 756, 1295
BsaBI GATNNNNATC 1 cut(s) 1537
BsaJI CCNNGG 2 cut(s) 439, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 1513, 1667
Bse1I ACTGG 5 cut(s) 468, 1069, 1374, 1504, 1733
Bse3DI GCAATG 2 cut(s) 1024, 1309
Bse8I GATNNNNATC 1 cut(s) 1537
BseDI CCNNGG 2 cut(s) 439, 879
BseJI GATNNNNATC 1 cut(s) 1537
BseLI CCNNNNNNNGG 2 cut(s) 1513, 1667
BseMI GCAATG 2 cut(s) 1024, 1309
BseMII CTCAG 5 cut(s) 113, 165, 621, 794, 956
BseNI ACTGG 5 cut(s) 468, 1069, 1374, 1504, 1733
BseRI GAGGAG 2 cut(s) 16, 534
BseX3I CGGCCG 1 cut(s) 1682
BseYI CCCAGC 2 cut(s) 1447, 1629
BsgI GTGCAG 4 cut(s) 708, 1176, 1341, 1676
Bsh1285I CGRYCG 1 cut(s) 1685
BshFI GGCC 4 cut(s) 38, 1506, 1600, 1684
BshNI GGYRCC 1 cut(s) 1372
BsiEI CGRYCG 1 cut(s) 1685
BsiHKCI CYCGRG 1 cut(s) 501
BslFI GGGAC 3 cut(s) 290, 790, 1384
BslI CCNNNNNNNGG 2 cut(s) 1513, 1667
BsmAI GTCTC 3 cut(s) 222, 454, 988
BsmFI GGGAC 3 cut(s) 290, 790, 1384
BsnI GGCC 4 cut(s) 38, 1506, 1600, 1684
BsoBI CYCGRG 1 cut(s) 501
Bsp143I GATC 5 cut(s) 304, 788, 805, 872, 1538
BspACI CCGC 4 cut(s) 97, 657, 1433, 1559
BspANI GGCC 4 cut(s) 38, 1506, 1600, 1684
BspCNI CTCAG 5 cut(s) 114, 166, 620, 793, 955
BspLI GGNNCC 1 cut(s) 1374
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 1642
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 1 cut(s) 1546
BspT107I GGYRCC 1 cut(s) 1372
BsrDI GCAATG 2 cut(s) 1024, 1309
BsrI ACTGG 5 cut(s) 468, 1069, 1374, 1504, 1733
BssECI CCNNGG 2 cut(s) 439, 879
BssMI GATC 5 cut(s) 304, 788, 805, 872, 1538
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 4 cut(s) 171, 353, 999, 1620
Bst6I CTCTTC 3 cut(s) 587, 744, 1125
BstAPI GCANNNNNTGC 2 cut(s) 99, 1154
BstC8I GCNNGC 3 cut(s) 688, 1388, 1662
BstDEI CTNAG 5 cut(s) 122, 174, 607, 780, 942
BstDSI CCRYGG 1 cut(s) 439
BstKTI GATC 5 cut(s) 307, 791, 808, 875, 1541
BstMAI GTCTC 3 cut(s) 222, 454, 988
BstMBI GATC 5 cut(s) 304, 788, 805, 872, 1538
BstMCI CGRYCG 1 cut(s) 1685
BstNSI RCATGY 3 cut(s) 419, 686, 1390
BstSFI CTRYAG 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 788, 872
BstXI CCANNNNNNTGG 2 cut(s) 463, 1502
BstYI RGATCY 2 cut(s) 788, 872
BstZI CGGCCG 1 cut(s) 1682
BsuRI GGCC 4 cut(s) 38, 1506, 1600, 1684
BtgI CCRYGG 1 cut(s) 439
BtsI GCAGTG 4 cut(s) 373, 1324, 1439, 1622
BtsIMutI CAGTG 5 cut(s) 373, 1324, 1367, 1439, 1622
BveI ACCTGC 1 cut(s) 1642
Cac8I GCNNGC 3 cut(s) 688, 1388, 1662
CaiI CAGNNNCTG 3 cut(s) 1154, 1157, 1624
Cfr13I GGNCC 3 cut(s) 910, 1430, 1599
Csp6I GTAC 1 cut(s) 827
CviAII CATG 7 cut(s) 273, 416, 457, 683, 1030, 1387, 1567
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 5 cut(s) 122, 174, 607, 780, 942
DpnI GATC 5 cut(s) 306, 790, 807, 874, 1540
DpnII GATC 5 cut(s) 304, 788, 805, 872, 1538
DraI TTTAAA 1 cut(s) 705
EaeI YGGCCR 1 cut(s) 1682
EagI CGGCCG 1 cut(s) 1682
Eam1104I CTCTTC 3 cut(s) 587, 744, 1125
EarI CTCTTC 3 cut(s) 587, 744, 1125
EciI GGCGGA 2 cut(s) 1422, 1548
EclXI CGGCCG 1 cut(s) 1682
Eco130I CCWWGG 1 cut(s) 879
Eco47I GGWCC 2 cut(s) 910, 1430
Eco52I CGGCCG 1 cut(s) 1682
Eco57I CTGAAG 4 cut(s) 830, 890, 1251, 1329
Eco88I CYCGRG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 879
FaeI CATG 7 cut(s) 276, 419, 460, 686, 1033, 1390, 1570
FalI AAGNNNNNCTT 4 cut(s) 813, 845, 888, 920
FaqI GGGAC 3 cut(s) 290, 790, 1384
FatI CATG 7 cut(s) 272, 415, 456, 682, 1029, 1386, 1566
FauNDI CATATG 1 cut(s) 473
FblI GTMKAC 1 cut(s) 637
FspBI CTAG 3 cut(s) 687, 1359, 1665
GsaI CCCAGC 2 cut(s) 1451, 1633
GsuI CTGGAG 1 cut(s) 1239
HaeIII GGCC 4 cut(s) 38, 1506, 1600, 1684
Hin1II CATG 7 cut(s) 276, 419, 460, 686, 1033, 1390, 1570
HincII GTYRAC 2 cut(s) 469, 1203
HindII GTYRAC 2 cut(s) 469, 1203
HinfI GANTC 8 cut(s) 76, 215, 538, 615, 769, 778, 1040, 1483
HphI GGTGA 3 cut(s) 443, 646, 1114
Hpy166II GTNNAC 3 cut(s) 469, 638, 1203
Hpy188I TCNGA 5 cut(s) 175, 246, 810, 966, 1297
Hpy188III TCNNGA 5 cut(s) 501, 583, 674, 908, 1256
Hpy8I GTNNAC 3 cut(s) 469, 638, 1203
HpyAV CCTTC 4 cut(s) 143, 481, 805, 984
HpyCH4III ACNGT 4 cut(s) 171, 353, 999, 1620
HpyF3I CTNAG 5 cut(s) 122, 174, 607, 780, 942
Hsp92II CATG 7 cut(s) 276, 419, 460, 686, 1033, 1390, 1570
Kzo9I GATC 5 cut(s) 304, 788, 805, 872, 1538
LmnI GCTCC 2 cut(s) 814, 1114
LweI GCATC 8 cut(s) 30, 102, 219, 589, 1077, 1187, 1250, 1404
MaeI CTAG 3 cut(s) 687, 1359, 1665
MaeIII GTNAC 5 cut(s) 83, 945, 952, 1025, 1620
MalI GATC 5 cut(s) 306, 790, 807, 874, 1540
MboI GATC 5 cut(s) 304, 788, 805, 872, 1538
MflI RGATCY 2 cut(s) 788, 872
MluCI AATT 5 cut(s) 196, 289, 383, 620, 1546
MlyI GAGTC 4 cut(s) 70, 224, 763, 772
MmeI TCCRAC 2 cut(s) 610, 780
MroXI GAANNNNTTC 3 cut(s) 568, 903, 933
MseI TTAA 4 cut(s) 516, 704, 831, 894
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 3 cut(s) 99, 1037, 1154
NdeI CATATG 1 cut(s) 473
NdeII GATC 5 cut(s) 304, 788, 805, 872, 1538
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 7 cut(s) 276, 419, 460, 686, 1033, 1390, 1570
NlaIV GGNNCC 1 cut(s) 1374
NmuCI GTSAC 2 cut(s) 83, 1620
NspI RCATGY 3 cut(s) 419, 686, 1390
PaeI GCATGC 1 cut(s) 1390
PaeR7I CTCGAG 1 cut(s) 501
PaqCI CACCTGC 1 cut(s) 1642
PdmI GAANNNNTTC 3 cut(s) 568, 903, 933
PfeI GAWTC 4 cut(s) 538, 615, 1040, 1483
PflMI CCANNNNNTGG 1 cut(s) 1667
PleI GAGTC 4 cut(s) 70, 223, 763, 772
PpsI GAGTC 4 cut(s) 70, 223, 763, 772
PspFI CCCAGC 2 cut(s) 1447, 1629
PspN4I GGNNCC 1 cut(s) 1374
PspPI GGNCC 3 cut(s) 910, 1430, 1599
PstI CTGCAG 1 cut(s) 406
PstNI CAGNNNCTG 3 cut(s) 1154, 1157, 1624
PsuI RGATCY 2 cut(s) 788, 872
PvuII CAGCTG 2 cut(s) 1037, 1154
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 4 cut(s) 516, 704, 831, 894
Sau3AI GATC 5 cut(s) 304, 788, 805, 872, 1538
Sau96I GGNCC 3 cut(s) 910, 1430, 1599
SchI GAGTC 4 cut(s) 70, 224, 763, 772
SfaNI GCATC 8 cut(s) 30, 102, 219, 589, 1077, 1187, 1250, 1404
SfcI CTRYAG 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 501
SinI GGWCC 2 cut(s) 910, 1430
SlaI CTCGAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 4 cut(s) 410, 501, 771, 1274
SmoI CTYRAG 4 cut(s) 410, 501, 771, 1274
SpeI ACTAGT 1 cut(s) 1358
SphI GCATGC 1 cut(s) 1390
Sse9I AATT 5 cut(s) 196, 289, 383, 620, 1546
SsiI CCGC 4 cut(s) 97, 657, 1433, 1559
SspI AATATT 1 cut(s) 985
SspMI CTAG 3 cut(s) 687, 1359, 1665
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 4 cut(s) 171, 353, 999, 1620
TaqI TCGA 5 cut(s) 213, 502, 1481, 1595, 1741
TasI AATT 5 cut(s) 196, 289, 383, 620, 1546
TatI WGTACW 1 cut(s) 826
TfiI GAWTC 4 cut(s) 538, 615, 1040, 1483
Tru1I TTAA 4 cut(s) 516, 704, 831, 894
Tru9I TTAA 4 cut(s) 516, 704, 831, 894
TscAI CASTG 5 cut(s) 373, 1324, 1374, 1446, 1629
TseFI GTSAC 2 cut(s) 83, 1620
Tsp45I GTSAC 2 cut(s) 83, 1620
TspDTI ATGAA 6 cut(s) 396, 438, 495, 537, 693, 1143
TspGWI ACGGA 3 cut(s) 174, 456, 576
TspRI CASTG 5 cut(s) 373, 1324, 1374, 1446, 1629
Van91I CCANNNNNTGG 1 cut(s) 1667
VpaK11BI GGWCC 2 cut(s) 910, 1430
XapI RAATTY 1 cut(s) 383
XceI RCATGY 3 cut(s) 419, 686, 1390
XhoI CTCGAG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 637
XmnI GAANNNNTTC 3 cut(s) 568, 903, 933
XspI CTAG 3 cut(s) 687, 1359, 1665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.