Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008113

Physical Location & Seq

Genomic Coordinates Forward (+)

43066465 .. 43083760

Gene Structure 17296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAGACTGGTTGACATATGGGATGAAAGGAAGGTTTTTGGTTCTCGAGGGCAAACTCTTAAAGATGAAATGACGGGAAAGAATCCTCCTCCACCTATAAGCAACGGAAAGATTTCAAATCCTATCAAGATAGTGAAGAGGGATGCACACTCAGTTAGAATCAAATTGGCTGTTGGAGGTCTACCAGAAAAGATACTCACCGCACTTCAACCTGTTCTTGATGAACATGCTAGCGAAGAAGCTGCTTTAAACAAGTGTAGTGTTGCTGCACATTATGTGGGTAAAATAGAGGAAGAGGTTGAAAACAACTTGACTCAAGGGACTCAGCAGAGATCTACATTGTTGGATGATCTGAAGGAGCAGGAAGATGTACTTAATCTATCTATTGGACAGCTTGAAGCTGTGGCAGCAACAAGATCTGCCTTGGTTTTGCAGCTTAAAGAAGCACTTCAGGACCAAGAACCAAAGCTGGAAGCTGTTCGCACTCAGTTACAAGTTGCGCAACATCAGATTGAGAAAGTAAGCAATATTAGAAGGAGACTGTCTTTATCGCTGCAAAGCAATGTCAGTAACATGACAGCTGAATCTACAAGGATGTTAGAACCAACTGGCATCCAATCGCAGCCTCCTAACCAACCTGTGATTTCTTTTGCTCCTGTCAAAATCACTGATGAAGAGAACAAGAAAGCAGCAGCAGCTGCTGTTGCTGCTAAACTTGCTGCATCCACATCCTCTGCACAAATGTTGACTTCTGTTCTTTCTTCTCTGGTCGCTGAAGAAGCTGCATCTATGTTTTCTCCAGAAAAAAGGCAGAAACTTGAGAAATCTATGTCTGTTTCTGATGGCAATGCTGAAGTTGGCAGTGCAGCCTATTTTACCCCTCTACAACAGCAAACAATGACTAGTGTGCCACTGGCACCATCAACAAGCATGCAAACTATGTCCCAAGCTAACCAGATGCAAAGTCCTTTTGGTCCGCCCCCACTGCCCCCAGCACCATCTCAATCTTCAGCAACTCCACCATCGAATCAGTATGCCCAAACTGGTGGCCTTATGGTGGGTGTAATGCCTTATGGATATGGATCAAATAATTTGCCACCTCCGCCCCCCATGCCTCCACATATTTCAATGGGTCTGTCGAGGCCCACGCAACCCCAACAACAGTCACTGCCCCAGCAGCAGCAGCAGCAGCAACAGCAGGTGCAGCCAGCTAGTGGAGGTTATTATCGGCCGTTGGGTATGGGGTTCTATGGGCAAAGTAATCAGTCAGCTTCACAGCCAGTTCCTCGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

431

Amino Acids

46.5

Weight (kDa)

6.99

Isoelectric Point (pI)

69.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008113)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29400 FvH4_1g29400 FvH4_1g29400
malus_domestica	MD12G1014900.v1.1 MD14G1012500.v1.1
prunus_persica	Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1
pyrus_communis	pycom12g01210 pycom14g01070
rosa_chinensis	RchiOBHm_Chr3g0495551
rosa_laevigata	RLG00000022610 RLG00000022611 RLG00000022612
rosa_multiflora	Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390310
rosa_rugosa	Rorug03G0274000 Rorug03G0274100
rosa_samantha	Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600
rosa_wichuraiana	Rw3G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1189
Acc16I	TGCGCA	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	1189
AccB1I	GGYRCC	1 cut(s)	916
AccB7I	CCANNNNNTGG	1 cut(s)	1214
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	3 cut(s)	201, 977, 1103
AclWI	GGATC	1 cut(s)	1090
AcoI	YGGCCR	1 cut(s)	1229
AcuI	CTGAAG	5 cut(s)	374, 434, 795, 873, 993
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	1057, 1214
AgsI	TTSAA	5 cut(s)	117, 209, 302, 398, 1128
AhlI	ACTAGT	1 cut(s)	902
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	1090
AlwNI	CAGNNNCTG	3 cut(s)	698, 701, 1168
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	3 cut(s)	1048, 1142, 1229
Asp700I	GAANNNNTTC	3 cut(s)	112, 447, 477
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	3 cut(s)	454, 974, 1143
AsuHPI	GGTGA	1 cut(s)	190
AsuNHI	GCTAGC	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	2 cut(s)	454, 974
BanI	GGYRCC	1 cut(s)	916
BccI	CCATC	4 cut(s)	836, 928, 1006, 1030
BceAI	ACGGC	1 cut(s)	1216
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcoDI	GTCTC	1 cut(s)	532
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	3 cut(s)	231, 903, 1212
BfuAI	ACCTGC	1 cut(s)	1189
BglII	AGATCT	2 cut(s)	332, 416
Bme18I	GGWCC	2 cut(s)	454, 974
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	3 cut(s)	454, 974, 1143
BmiI	GGNNCC	1 cut(s)	918
BmsI	GCATC	5 cut(s)	133, 621, 731, 794, 948
BmtI	GCTAGC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	300, 839
BsaBI	GATNNNNATC	1 cut(s)	1081
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	1057, 1214
Bse1I	ACTGG	5 cut(s)	12, 613, 918, 1048, 1280
Bse3DI	GCAATG	2 cut(s)	568, 853
Bse8I	GATNNNNATC	1 cut(s)	1081
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	7 cut(s)	28, 148, 352, 600, 612, 722, 728
BseJI	GATNNNNATC	1 cut(s)	1081
BseLI	CCNNNNNNNGG	2 cut(s)	1057, 1214
BseMI	GCAATG	2 cut(s)	568, 853
BseMII	CTCAG	3 cut(s)	165, 338, 500
BseNI	ACTGG	5 cut(s)	12, 613, 918, 1048, 1280
BseRI	GAGGAG	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	1229
BseYI	CCCAGC	2 cut(s)	991, 1173
BsgI	GTGCAG	4 cut(s)	252, 720, 885, 1223
Bsh1285I	CGRYCG	1 cut(s)	1232
BshFI	GGCC	3 cut(s)	1050, 1144, 1231
BshNI	GGYRCC	1 cut(s)	916
BsiEI	CGRYCG	1 cut(s)	1232
BsiHKCI	CYCGRG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	334, 928
BslI	CCNNNNNNNGG	2 cut(s)	1057, 1214
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	2 cut(s)	334, 928
BsnI	GGCC	3 cut(s)	1050, 1144, 1231
BsoBI	CYCGRG	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	332, 349, 416, 1082
BspACI	CCGC	3 cut(s)	201, 977, 1103
BspANI	GGCC	3 cut(s)	1050, 1144, 1231
BspCNI	CTCAG	3 cut(s)	164, 337, 499
BspLI	GGNNCC	1 cut(s)	918
BspMI	ACCTGC	1 cut(s)	1189
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	1090
BspT107I	GGYRCC	1 cut(s)	916
BsrDI	GCAATG	2 cut(s)	568, 853
BsrI	ACTGG	5 cut(s)	12, 613, 918, 1048, 1280
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	4 cut(s)	332, 349, 416, 1082
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	543, 1164
Bst6I	CTCTTC	3 cut(s)	131, 288, 669
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	232, 932, 1209
BstDEI	CTNAG	3 cut(s)	151, 324, 486
BstF5I	GGATG	7 cut(s)	28, 148, 352, 600, 612, 722, 728
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	4 cut(s)	335, 352, 419, 1085
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	4 cut(s)	332, 349, 416, 1082
BstMCI	CGRYCG	1 cut(s)	1232
BstNSI	RCATGY	2 cut(s)	230, 934
BstX2I	RGATCY	2 cut(s)	332, 416
BstXI	CCANNNNNNTGG	1 cut(s)	1046
BstYI	RGATCY	2 cut(s)	332, 416
BstZI	CGGCCG	1 cut(s)	1229
BsuRI	GGCC	3 cut(s)	1050, 1144, 1231
BtsCI	GGATG	7 cut(s)	28, 148, 352, 600, 612, 722, 728
BtsI	GCAGTG	3 cut(s)	868, 983, 1166
BtsIMutI	CAGTG	5 cut(s)	666, 868, 911, 983, 1166
BveI	ACCTGC	1 cut(s)	1189
Cac8I	GCNNGC	3 cut(s)	232, 932, 1209
CaiI	CAGNNNCTG	3 cut(s)	698, 701, 1168
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	454, 974, 1143
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	4 cut(s)	227, 574, 931, 1111
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	151, 324, 486
DpnI	GATC	4 cut(s)	334, 351, 418, 1084
DpnII	GATC	4 cut(s)	332, 349, 416, 1082
DraI	TTTAAA	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	1229
EagI	CGGCCG	1 cut(s)	1229
Eam1104I	CTCTTC	3 cut(s)	131, 288, 669
EarI	CTCTTC	3 cut(s)	131, 288, 669
EciI	GGCGGA	2 cut(s)	966, 1092
EclXI	CGGCCG	1 cut(s)	1229
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	454, 974
Eco52I	CGGCCG	1 cut(s)	1229
Eco57I	CTGAAG	5 cut(s)	374, 434, 795, 873, 993
Eco88I	CYCGRG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	4 cut(s)	230, 577, 934, 1114
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 432, 464
FaqI	GGGAC	2 cut(s)	334, 928
FatI	CATG	4 cut(s)	226, 573, 930, 1110
FauNDI	CATATG	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	181
FokI	GGATG	7 cut(s)	35, 155, 359, 599, 607, 709, 715
FspBI	CTAG	3 cut(s)	231, 903, 1212
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	1 cut(s)	501
GsaI	CCCAGC	2 cut(s)	995, 1177
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	3 cut(s)	1050, 1144, 1231
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	4 cut(s)	230, 577, 934, 1114
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	2 cut(s)	13, 747
HindII	GTYRAC	2 cut(s)	13, 747
HinfI	GANTC	6 cut(s)	82, 159, 313, 322, 584, 1027
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	13, 182, 747
Hpy188I	TCNGA	3 cut(s)	354, 510, 841
Hpy188III	TCNNGA	5 cut(s)	45, 127, 218, 452, 800
Hpy8I	GTNNAC	3 cut(s)	13, 182, 747
HpyAV	CCTTC	3 cut(s)	25, 349, 528
HpyCH4III	ACNGT	2 cut(s)	543, 1164
HpyF3I	CTNAG	3 cut(s)	151, 324, 486
Hsp92II	CATG	4 cut(s)	230, 577, 934, 1114
HspAI	GCGC	1 cut(s)	500
Kzo9I	GATC	4 cut(s)	332, 349, 416, 1082
LmnI	GCTCC	2 cut(s)	358, 658
LweI	GCATC	5 cut(s)	133, 621, 731, 794, 948
MaeI	CTAG	3 cut(s)	231, 903, 1212
MaeIII	GTNAC	3 cut(s)	489, 569, 1164
MalI	GATC	4 cut(s)	334, 351, 418, 1084
MboI	GATC	4 cut(s)	332, 349, 416, 1082
MboII	GAAGA	8 cut(s)	148, 248, 305, 377, 686, 753, 788, 999
MflI	RGATCY	2 cut(s)	332, 416
MluCI	AATT	2 cut(s)	164, 1090
MlyI	GAGTC	2 cut(s)	307, 316
MmeI	TCCRAC	2 cut(s)	154, 324
MroXI	GAANNNNTTC	3 cut(s)	112, 447, 477
MseI	TTAA	4 cut(s)	60, 248, 375, 438
MspA1I	CMGCKG	2 cut(s)	581, 698
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	4 cut(s)	332, 349, 416, 1082
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	230, 577, 934, 1114
NlaIV	GGNNCC	1 cut(s)	918
NmuCI	GTSAC	1 cut(s)	1164
NsbI	TGCGCA	1 cut(s)	501
NspI	RCATGY	2 cut(s)	230, 934
PaeI	GCATGC	1 cut(s)	934
PaeR7I	CTCGAG	1 cut(s)	45
PaqCI	CACCTGC	1 cut(s)	1189
PdmI	GAANNNNTTC	3 cut(s)	112, 447, 477
PfeI	GAWTC	4 cut(s)	82, 159, 584, 1027
PflMI	CCANNNNNTGG	1 cut(s)	1214
PleI	GAGTC	2 cut(s)	307, 316
PpsI	GAGTC	2 cut(s)	307, 316
PspFI	CCCAGC	2 cut(s)	991, 1173
PspN4I	GGNNCC	1 cut(s)	918
PspPI	GGNCC	3 cut(s)	454, 974, 1143
PstNI	CAGNNNCTG	3 cut(s)	698, 701, 1168
PsuI	RGATCY	2 cut(s)	332, 416
PvuII	CAGCTG	2 cut(s)	581, 698
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	60, 248, 375, 438
Sau3AI	GATC	4 cut(s)	332, 349, 416, 1082
Sau96I	GGNCC	3 cut(s)	454, 974, 1143
SchI	GAGTC	2 cut(s)	307, 316
SfaNI	GCATC	5 cut(s)	133, 621, 731, 794, 948
Sfr274I	CTCGAG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	454, 974
SlaI	CTCGAG	1 cut(s)	45
SmlI	CTYRAG	3 cut(s)	45, 315, 818
SmoI	CTYRAG	3 cut(s)	45, 315, 818
SpeI	ACTAGT	1 cut(s)	902
SphI	GCATGC	1 cut(s)	934
Sse9I	AATT	2 cut(s)	164, 1090
SsiI	CCGC	3 cut(s)	201, 977, 1103
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	3 cut(s)	231, 903, 1212
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	543, 1164
TaqI	TCGA	4 cut(s)	46, 1025, 1139, 1288
TasI	AATT	2 cut(s)	164, 1090
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	4 cut(s)	82, 159, 584, 1027
Tru1I	TTAA	4 cut(s)	60, 248, 375, 438
Tru9I	TTAA	4 cut(s)	60, 248, 375, 438
TscAI	CASTG	5 cut(s)	673, 868, 918, 990, 1173
TseFI	GTSAC	1 cut(s)	1164
Tsp45I	GTSAC	1 cut(s)	1164
TspDTI	ATGAA	4 cut(s)	39, 81, 237, 687
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	5 cut(s)	673, 868, 918, 990, 1173
Van91I	CCANNNNNTGG	1 cut(s)	1214
VpaK11BI	GGWCC	2 cut(s)	454, 974
XceI	RCATGY	2 cut(s)	230, 934
XhoI	CTCGAG	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	181
XmnI	GAANNNNTTC	3 cut(s)	112, 447, 477
XspI	CTAG	3 cut(s)	231, 903, 1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.