Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014579.1

Orthogroup ID

OG0008113

Physical Location & Seq

Genomic Coordinates Reverse (-)

8139 .. 8876

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014579.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgacagctgaatctacaaggatgttagaaccaactggcatccaatcgcagcctcctaaccaacctgtgatttcttttgctcctgtcaaaatcaccgatgaagagaacaagaaagcagcagcagctgctgttgctgctaaacttgctgcatccacatcctctgcacaaatgttgacttctgttctttcttctctggtcgctgaagaagctgcatctatgttttctccagaaaaaaggcagaaacttgagaaatctatgtctgtttctgatggcaatgctgaagttggcagtgcagcctattttacccctctacaacagcaaacaatgactagtgtgccactggcaccatcaacaagcatgcaaactatgtcccaagctaaccagatgcaaagtccttttggtccgcccccactgcccccagcaccatctcaatcttctgcaactccaccatcgaatcagtatgcccaaactggtggccttatggtgggtgtaatgccttatggatatggatcaaataatttgccacctccgccccccatgcctccacatatttcaatgggtctgtcgaggcccacgcaaccccaacaacagtcactgccccagcagcagcagcagcagcagcaacaacaacagcaacagcaggtgcagccagctagtggaggttattatcggccgttgggtatggggttctatgggcaaagtaatcagtcagcttcacagccagttcctcgacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

245

Amino Acids

25.99

Weight (kDa)

7.93

Isoelectric Point (pI)

85.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008113)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29400 FvH4_1g29400 FvH4_1g29400
malus_domestica	MD12G1014900.v1.1 MD14G1012500.v1.1
prunus_persica	Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1
pyrus_communis	pycom12g01210 pycom14g01070
rosa_chinensis	RchiOBHm_Chr3g0495551
rosa_laevigata	RLG00000022610 RLG00000022611 RLG00000022612
rosa_multiflora	Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390310
rosa_rugosa	Rorug03G0274000 Rorug03G0274100
rosa_samantha	Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600
rosa_wichuraiana	Rw3G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	656
AciI	CCGC	2 cut(s)	404, 530
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	671
AcuI	CTGAAG	2 cut(s)	222, 300
AfiI	CCNNNNNNNGG	2 cut(s)	484, 656
AgsI	TTSAA	1 cut(s)	555
AhlI	ACTAGT	1 cut(s)	329
AluBI	AGCT	6 cut(s)	8, 125, 209, 377, 653, 713
AluI	AGCT	6 cut(s)	8, 125, 209, 377, 653, 713
AlwI	GGATC	1 cut(s)	517
AlwNI	CAGNNNCTG	3 cut(s)	125, 128, 595
AoxI	GGCC	3 cut(s)	475, 569, 671
AspS9I	GGNCC	2 cut(s)	401, 570
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	343
BccI	CCATC	4 cut(s)	263, 355, 433, 457
BceAI	ACGGC	1 cut(s)	658
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	2 cut(s)	330, 654
BfuAI	ACCTGC	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	401, 570
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	4 cut(s)	48, 158, 221, 375
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 656
Bse1I	ACTGG	4 cut(s)	40, 345, 475, 722
Bse3DI	GCAATG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	508
BseGI	GGATG	4 cut(s)	27, 39, 149, 155
BseJI	GATNNNNATC	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	484, 656
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	4 cut(s)	40, 345, 475, 722
BseX3I	CGGCCG	1 cut(s)	671
BseYI	CCCAGC	2 cut(s)	418, 600
BsgI	GTGCAG	3 cut(s)	147, 312, 665
Bsh1285I	CGRYCG	1 cut(s)	674
BshFI	GGCC	3 cut(s)	477, 571, 673
BshNI	GGYRCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	484, 656
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	477, 571, 673
Bsp143I	GATC	1 cut(s)	509
BspACI	CCGC	2 cut(s)	404, 530
BspANI	GGCC	3 cut(s)	477, 571, 673
BspLI	GGNNCC	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	40, 345, 475, 722
BssMI	GATC	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	359, 651
BstF5I	GGATG	4 cut(s)	27, 39, 149, 155
BstKTI	GATC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	509
BstMCI	CGRYCG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstZI	CGGCCG	1 cut(s)	671
BsuRI	GGCC	3 cut(s)	477, 571, 673
BtsCI	GGATG	4 cut(s)	27, 39, 149, 155
BtsI	GCAGTG	3 cut(s)	295, 410, 593
BtsIMutI	CAGTG	4 cut(s)	295, 338, 410, 593
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	359, 651
CaiI	CAGNNNCTG	3 cut(s)	125, 128, 595
Cfr13I	GGNCC	2 cut(s)	401, 570
CviAII	CATG	2 cut(s)	358, 538
DpnI	GATC	1 cut(s)	511
DpnII	GATC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	671
EagI	CGGCCG	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	2 cut(s)	393, 519
EclXI	CGGCCG	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	401
Eco52I	CGGCCG	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	222, 300
FaeI	CATG	2 cut(s)	361, 541
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	2 cut(s)	357, 537
FokI	GGATG	4 cut(s)	26, 34, 136, 142
FspBI	CTAG	2 cut(s)	330, 654
GsaI	CCCAGC	2 cut(s)	422, 604
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	477, 571, 673
Hin1II	CATG	2 cut(s)	361, 541
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	11, 454
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4V	TGCA	8 cut(s)	149, 164, 212, 293, 361, 388, 440, 646
Hsp92II	CATG	2 cut(s)	361, 541
Kzo9I	GATC	1 cut(s)	509
LmnI	GCTCC	1 cut(s)	85
LweI	GCATC	4 cut(s)	48, 158, 221, 375
MaeI	CTAG	2 cut(s)	330, 654
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	1 cut(s)	511
MboI	GATC	1 cut(s)	509
MboII	GAAGA	4 cut(s)	113, 180, 215, 426
MluCI	AATT	1 cut(s)	517
MnlI	CCTC	8 cut(s)	63, 169, 318, 537, 552, 561, 653, 738
MspA1I	CMGCKG	2 cut(s)	8, 125
NdeII	GATC	1 cut(s)	509
NlaIII	CATG	2 cut(s)	361, 541
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	361
PaeI	GCATGC	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	631
PfeI	GAWTC	2 cut(s)	11, 454
PflMI	CCANNNNNTGG	1 cut(s)	656
PspFI	CCCAGC	2 cut(s)	418, 600
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	401, 570
PstNI	CAGNNNCTG	3 cut(s)	125, 128, 595
PvuII	CAGCTG	2 cut(s)	8, 125
Sau3AI	GATC	1 cut(s)	509
Sau96I	GGNCC	2 cut(s)	401, 570
SfaNI	GCATC	4 cut(s)	48, 158, 221, 375
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SpeI	ACTAGT	1 cut(s)	329
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	2 cut(s)	404, 530
SspMI	CTAG	2 cut(s)	330, 654
TaaI	ACNGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	452, 566, 730
TasI	AATT	1 cut(s)	517
TfiI	GAWTC	2 cut(s)	11, 454
TscAI	CASTG	4 cut(s)	295, 345, 417, 600
TseFI	GTSAC	1 cut(s)	591
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	295, 345, 417, 600
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	2 cut(s)	330, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.