RLG00000022612

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008113
Physical Location & Seq
Reverse (-)
5293949 .. 5309735
15787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022612

Sequence Viewer

Length: 1665 bp
ATGGAGAATAGGAGTTGTAGCACCTCGTGTCAGGCCGACAACAAGAACAAGAAGACTCCAAGTGACCTCTTCATCCGCTGCTCTGGGGATCTCTCTAAACTCAACAATTCACAACAAAGCATCGAGTCTCTTTCTCGTTGGTGTATTTCTCATCGGAAGAAAGCAAAGCAGATTGTTGAAACATGGGACAAGTATTTCAATTCTTCCCAAAAAGATCAGCGTGTGTCTTTTCTATATCTGGCGAATGACATATTGCAAAACAGTAGGCGAAAGGGCAGTGAGTTTGTGAATGAATTTTGGAAAGTTCTTCCTGCAGCTCTCAAGCATGTTTATGAAAATGGTGATGACCACGGAAAGAAAGCTGCCATGAGACTGGTTGACATATGGGATGAAAGGAAGGTTTTTGGTTCTCGAGGGCAAACTCTTAAAGATGAAATGACGGGAAAGAATCCGCCTCCACCTATAAGCAATGGAAAGATTTCAAATCCTATCAAGATAGTGAAGAGAGATGCACACTCAGTTAGAATCAAATTGGCTGTTGGAGGTCTACCAGAAAAGATACTCACCGCACTTCAACCTGTTCTTGATGAACATGCTAGCGAAGAAGCTGCTTTAAACAAGTGTAGTGTTGCTGCACATTATGTGGGTAAAATAGAGGAAGAGGTTGAAAACAACTTGACTCAAGGGACTCAGCAGAGATCGACTTTGTTGGATGATCTGAAGGAACAGGAAGATGTACTTAATCTATCTATTGGACAGCTTGAAGCTGTGGCAGCAACAAGATCTGCCTTGGTTTTGCAGCTTAAAGAAGCACTTCAGGACCAAGAACCAAAGCTGGAAGCTGTTCGCACTCAGTTACAAGTTGCGCAACATCAGATTGAGAAAGTAAGCAATATTAGAAGGAGACTGTCTTTGTCGCCGCAAAGCAATGTCATTAACATGACAGCTGAATCTACAAGGATGTTAGAACCAACTGGCATCCAATCGCAGCCTCCTAACCAACCTGTGATTTCTTTTGCTCCTGTCAAAATCACCGATGAAGAGAACAAGAAAGCAGCAGCAGCTGCTGTTGCTGCTAAACTTGCTGCATCCACATCCTCTGCACAGATGTTGACTTCTGTTCTTTCTTCTCTGGTTGCTGAAGAAGCTGCATCTATGTTTTCTCCAGAAAAAAGGCAGAAACTTGAGAAATCTATGTCTGTTTCTGATGGCAATGCTGAAGTTGGCAGTGCAGCCTATTTTACCCCTCTACAACAGCAAACAATGACTAGTGTGCCACTGGCACCATCAACAAGCATGCAAACTATGTCCCAAGCTAACCAGATGCAAAGTCCTTTTGGTCCGCCCCCACCGCCCCCAGCACCATCTCAATCTTCTGCGACTCCACCATCGAATCAGTATGTCCAAACTGGTGGCCTTATGGTGGGTGTAATGCCTTACGGATATGGATCAAATAATTTGCCACCTCCGCCCCCCATGCCTCCACATATTTCAATGGGTCTGTCGAGGCCCGTGCAACCCCAACAGCAGTCACTGCCCCAGCAGCAGCAGCAACAACAGCAACAGCAGGTGCAGCCAGCTAGTGGAGGTTACTATCGGCCATTGGGTATGGGGTTCTACGGGCAAAGTAATCAGTCAGCTTCACAGCCAGTTCCTCGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

555

Amino Acids

60.7

Weight (kDa)

8.94

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 30 - 137 2.6e-39 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1558
Acc16I TGCGCA 1 cut(s) 867
Acc36I ACCTGC 1 cut(s) 1558
AccB1I GGYRCC 1 cut(s) 1282
AccB7I CCANNNNNTGG 1 cut(s) 1583
AccI GTMKAC 1 cut(s) 547
AciI CCGC 7 cut(s) 76, 452, 567, 920, 1343, 1352, 1469
AclWI GGATC 2 cut(s) 96, 1456
AcoI YGGCCR 1 cut(s) 1598
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 4 cut(s) 740, 800, 1161, 1239
AdeI CACNNNGTG 1 cut(s) 27
AfaI GTAC 1 cut(s) 738
AfiI CCNNNNNNNGG 2 cut(s) 1423, 1583
AgsI TTSAA 7 cut(s) 179, 199, 483, 575, 668, 764, 1494
AhlI ACTAGT 1 cut(s) 1268
Alw26I GTCTC 3 cut(s) 132, 364, 898
AlwI GGATC 2 cut(s) 96, 1456
AlwNI CAGNNNCTG 3 cut(s) 1064, 1067, 1534
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 4 cut(s) 33, 1414, 1508, 1598
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 3 cut(s) 478, 813, 843
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 3 cut(s) 820, 1340, 1509
AsuHPI GGTGA 3 cut(s) 353, 556, 1024
AsuNHI GCTAGC 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 2 cut(s) 820, 1340
BanI GGYRCC 1 cut(s) 1282
BauI CACGAG 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 4 cut(s) 1202, 1294, 1372, 1396
BcgI CGANNNNNNTGC 4 cut(s) 590, 624, 1495, 1529
BcoDI GTCTC 3 cut(s) 132, 364, 898
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 3 cut(s) 597, 1269, 1581
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 1558
BglII AGATCT 1 cut(s) 782
Bme18I GGWCC 2 cut(s) 820, 1340
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 3 cut(s) 820, 1340, 1509
BmiI GGNNCC 1 cut(s) 1284
BmsI GCATC 6 cut(s) 129, 499, 987, 1097, 1160, 1314
BmtI GCTAGC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 1149
BpuEI CTTGAG 3 cut(s) 305, 666, 1205
BsaBI GATNNNNATC 1 cut(s) 1447
BsaJI CCNNGG 2 cut(s) 349, 789
Bsc4I CCNNNNNNNGG 2 cut(s) 1423, 1583
Bse1I ACTGG 5 cut(s) 378, 979, 1284, 1414, 1649
Bse3DI GCAATG 3 cut(s) 475, 934, 1219
Bse8I GATNNNNATC 1 cut(s) 1447
BseDI CCNNGG 2 cut(s) 349, 789
BseGI GGATG 7 cut(s) 72, 394, 718, 966, 978, 1088, 1094
BseJI GATNNNNATC 1 cut(s) 1447
BseLI CCNNNNNNNGG 2 cut(s) 1423, 1583
BseMI GCAATG 3 cut(s) 475, 934, 1219
BseMII CTCAG 3 cut(s) 531, 704, 866
BseNI ACTGG 5 cut(s) 378, 979, 1284, 1414, 1649
BseYI CCCAGC 2 cut(s) 1357, 1539
BsgI GTGCAG 4 cut(s) 618, 1086, 1251, 1592
BshFI GGCC 4 cut(s) 35, 1416, 1510, 1600
BshNI GGYRCC 1 cut(s) 1282
BsiHKCI CYCGRG 1 cut(s) 411
BslFI GGGAC 3 cut(s) 200, 700, 1294
BslI CCNNNNNNNGG 2 cut(s) 1423, 1583
BsmAI GTCTC 3 cut(s) 132, 364, 898
BsmFI GGGAC 3 cut(s) 200, 700, 1294
BsnI GGCC 4 cut(s) 35, 1416, 1510, 1600
BsoBI CYCGRG 1 cut(s) 411
Bsp143I GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
BspACI CCGC 7 cut(s) 76, 452, 567, 920, 1343, 1352, 1469
BspANI GGCC 4 cut(s) 35, 1416, 1510, 1600
BspCNI CTCAG 3 cut(s) 530, 703, 865
BspLI GGNNCC 1 cut(s) 1284
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 1558
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 2 cut(s) 96, 1456
BspT107I GGYRCC 1 cut(s) 1282
BsrDI GCAATG 3 cut(s) 475, 934, 1219
BsrI ACTGG 5 cut(s) 378, 979, 1284, 1414, 1649
BssECI CCNNGG 2 cut(s) 349, 789
BssMI GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 263, 909
Bst6I CTCTTC 4 cut(s) 74, 497, 654, 1035
BstAPI GCANNNNNTGC 2 cut(s) 1064, 1534
BstC8I GCNNGC 3 cut(s) 598, 1298, 1578
BstDEI CTNAG 3 cut(s) 517, 690, 852
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 7 cut(s) 72, 394, 718, 966, 978, 1088, 1094
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 6 cut(s) 91, 217, 701, 718, 785, 1451
BstMAI GTCTC 3 cut(s) 132, 364, 898
BstMBI GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
BstNSI RCATGY 3 cut(s) 329, 596, 1300
BstSFI CTRYAG 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 88, 782
BstXI CCANNNNNNTGG 2 cut(s) 373, 1412
BstYI RGATCY 2 cut(s) 88, 782
BsuRI GGCC 4 cut(s) 35, 1416, 1510, 1600
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 7 cut(s) 72, 394, 718, 966, 978, 1088, 1094
BtsI GCAGTG 3 cut(s) 283, 1234, 1532
BtsIMutI CAGTG 4 cut(s) 283, 1234, 1277, 1532
BveI ACCTGC 1 cut(s) 1558
Cac8I GCNNGC 3 cut(s) 598, 1298, 1578
CaiI CAGNNNCTG 3 cut(s) 1064, 1067, 1534
CfoI GCGC 1 cut(s) 868
Cfr13I GGNCC 3 cut(s) 820, 1340, 1509
Csp6I GTAC 1 cut(s) 737
CviAII CATG 7 cut(s) 183, 326, 367, 593, 940, 1297, 1477
CviQI GTAC 1 cut(s) 737
DdeI CTNAG 3 cut(s) 517, 690, 852
DpnI GATC 6 cut(s) 90, 216, 700, 717, 784, 1450
DpnII GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
DraI TTTAAA 1 cut(s) 615
DraIII CACNNNGTG 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 1598
Eam1104I CTCTTC 4 cut(s) 74, 497, 654, 1035
EarI CTCTTC 4 cut(s) 74, 497, 654, 1035
EciI GGCGGA 3 cut(s) 441, 1332, 1458
Eco130I CCWWGG 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 820, 1340
Eco57I CTGAAG 4 cut(s) 740, 800, 1161, 1239
Eco88I CYCGRG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 7 cut(s) 186, 329, 370, 596, 943, 1300, 1480
FalI AAGNNNNNCTT 4 cut(s) 723, 755, 798, 830
FaqI GGGAC 3 cut(s) 200, 700, 1294
FatI CATG 7 cut(s) 182, 325, 366, 592, 939, 1296, 1476
FauNDI CATATG 1 cut(s) 383
FblI GTMKAC 1 cut(s) 547
FokI GGATG 7 cut(s) 59, 401, 725, 965, 973, 1075, 1081
FspBI CTAG 3 cut(s) 597, 1269, 1581
FspI TGCGCA 1 cut(s) 867
GlaI GCGC 1 cut(s) 867
GsaI CCCAGC 2 cut(s) 1361, 1543
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 4 cut(s) 35, 1416, 1510, 1600
HhaI GCGC 1 cut(s) 868
Hin1II CATG 7 cut(s) 186, 329, 370, 596, 943, 1300, 1480
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HincII GTYRAC 2 cut(s) 379, 1113
HindII GTYRAC 2 cut(s) 379, 1113
HinfI GANTC 9 cut(s) 55, 125, 448, 525, 679, 688, 950, 1381, 1393
HphI GGTGA 3 cut(s) 353, 556, 1024
Hpy166II GTNNAC 3 cut(s) 379, 548, 1113
Hpy188I TCNGA 4 cut(s) 156, 720, 876, 1207
Hpy188III TCNNGA 5 cut(s) 411, 493, 584, 818, 1166
Hpy8I GTNNAC 3 cut(s) 379, 548, 1113
HpyAV CCTTC 3 cut(s) 391, 715, 894
HpyCH4III ACNGT 2 cut(s) 263, 909
HpyF3I CTNAG 3 cut(s) 517, 690, 852
Hsp92II CATG 7 cut(s) 186, 329, 370, 596, 943, 1300, 1480
HspAI GCGC 1 cut(s) 866
Kzo9I GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
LmnI GCTCC 1 cut(s) 1024
LweI GCATC 6 cut(s) 129, 499, 987, 1097, 1160, 1314
MaeI CTAG 3 cut(s) 597, 1269, 1581
MaeIII GTNAC 4 cut(s) 62, 855, 1530, 1589
MalI GATC 6 cut(s) 90, 216, 700, 717, 784, 1450
MboI GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
MflI RGATCY 2 cut(s) 88, 782
MluCI AATT 5 cut(s) 106, 199, 293, 530, 1456
MlyI GAGTC 5 cut(s) 49, 134, 673, 682, 1375
MmeI TCCRAC 2 cut(s) 520, 690
MroXI GAANNNNTTC 3 cut(s) 478, 813, 843
MseI TTAA 5 cut(s) 426, 614, 741, 804, 936
MslI CAYNNNNRTG 2 cut(s) 330, 938
MspA1I CMGCKG 3 cut(s) 78, 947, 1064
NdeI CATATG 1 cut(s) 383
NdeII GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 7 cut(s) 186, 329, 370, 596, 943, 1300, 1480
NlaIV GGNNCC 1 cut(s) 1284
NmuCI GTSAC 2 cut(s) 62, 1530
NsbI TGCGCA 1 cut(s) 867
NspI RCATGY 3 cut(s) 329, 596, 1300
PaeI GCATGC 1 cut(s) 1300
PaeR7I CTCGAG 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 1558
PdmI GAANNNNTTC 3 cut(s) 478, 813, 843
PfeI GAWTC 4 cut(s) 448, 525, 950, 1393
PflMI CCANNNNNTGG 1 cut(s) 1583
PleI GAGTC 5 cut(s) 49, 133, 673, 682, 1375
PpsI GAGTC 5 cut(s) 49, 133, 673, 682, 1375
PspFI CCCAGC 2 cut(s) 1357, 1539
PspN4I GGNNCC 1 cut(s) 1284
PspPI GGNCC 3 cut(s) 820, 1340, 1509
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 3 cut(s) 1064, 1067, 1534
PsuI RGATCY 2 cut(s) 88, 782
PvuII CAGCTG 2 cut(s) 947, 1064
RsaI GTAC 1 cut(s) 738
RsaNI GTAC 1 cut(s) 737
RseI CAYNNNNRTG 2 cut(s) 330, 938
SaqAI TTAA 5 cut(s) 426, 614, 741, 804, 936
Sau3AI GATC 6 cut(s) 88, 214, 698, 715, 782, 1448
Sau96I GGNCC 3 cut(s) 820, 1340, 1509
SchI GAGTC 5 cut(s) 49, 134, 673, 682, 1375
SfaNI GCATC 6 cut(s) 129, 499, 987, 1097, 1160, 1314
SfcI CTRYAG 1 cut(s) 312
Sfr274I CTCGAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 820, 1340
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 330, 938
SmlI CTYRAG 4 cut(s) 320, 411, 681, 1184
SmoI CTYRAG 4 cut(s) 320, 411, 681, 1184
SpeI ACTAGT 1 cut(s) 1268
SphI GCATGC 1 cut(s) 1300
Sse9I AATT 5 cut(s) 106, 199, 293, 530, 1456
SsiI CCGC 7 cut(s) 76, 452, 567, 920, 1343, 1352, 1469
SspI AATATT 1 cut(s) 895
SspMI CTAG 3 cut(s) 597, 1269, 1581
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 2 cut(s) 263, 909
TaqI TCGA 6 cut(s) 123, 412, 701, 1391, 1505, 1657
TasI AATT 5 cut(s) 106, 199, 293, 530, 1456
TatI WGTACW 1 cut(s) 736
TauI GCSGC 1 cut(s) 922
TfiI GAWTC 4 cut(s) 448, 525, 950, 1393
Tru1I TTAA 5 cut(s) 426, 614, 741, 804, 936
Tru9I TTAA 5 cut(s) 426, 614, 741, 804, 936
TscAI CASTG 4 cut(s) 283, 1234, 1284, 1539
TseFI GTSAC 2 cut(s) 62, 1530
Tsp45I GTSAC 2 cut(s) 62, 1530
TspDTI ATGAA 7 cut(s) 61, 306, 348, 405, 447, 603, 1053
TspGWI ACGGA 2 cut(s) 366, 1455
TspRI CASTG 4 cut(s) 283, 1234, 1284, 1539
Van91I CCANNNNNTGG 1 cut(s) 1583
VpaK11BI GGWCC 2 cut(s) 820, 1340
XapI RAATTY 1 cut(s) 293
XceI RCATGY 3 cut(s) 329, 596, 1300
XhoI CTCGAG 1 cut(s) 411
XmiI GTMKAC 1 cut(s) 547
XmnI GAANNNNTTC 3 cut(s) 478, 813, 843
XspI CTAG 3 cut(s) 597, 1269, 1581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.