Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006163.1

Orthogroup ID

OG0008113

Physical Location & Seq

Genomic Coordinates Reverse (-)

2656 .. 12016

Gene Structure 9361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgagttgtggagcaaaagtctgcaagagcatcaacttggccgacaacaagaagaagaagaagaagaagaagaagaagactccaagtgacctctgcatccgctgctctggggatgtaaaaaaactgagcaacagcaggatgagcaacaacgaaggttttgacggacatatactatctgagaagctctccaaactcaacaattcacaacaaagcatcgagtctctttctcgttggtgtatttctcatcggaagaaagcaaagcagattgttgaaacatgggacaagtatttcaattcttcccaaaaagatcagcgtgtgtcttttctatatctggcgaatgacatattgcaaaacagtaggcgaaagggcagtgagtttgtgaatgaattttggaaagttcttcctgcagctctcaagcatgtttatgaaaatggtgatgaccacggaaagaaagctgccatgagactggttgacatatgggatgaaaggaaggtttttggttctcgagggcaaactcttaaagatgaaatgacgggaaagaatcctcctccacctataagcaacggaaagatttcaaatcctatcaagatagtgaagagggatgcacactcagttagaatcaaattggctgttggaggtctaccagaaaagatactcaccgcacttcaacctgttcttgatgaacatgctagcgaagaagctgctttaaacaagtgtagtgttgctgcacattatgtgggtaaaatagaggaagaggttgaaaacaacttgactcaagggactcagcagagatctacattgttggatgatctgaaggagcaggaagatgtacttaatctatctattggacagcttgaagctgtggcagcaacaaggtctgccttggttttgcagcttaaagaagcacttcaggaccaagaaccaaagctggaagctgttcgcactcagttacaagacttggttgggaaacggattcgtgcagaaataacattatgttctagtgtaattgaaggcttcatcgtgggtgatgcaactactgctggaacatcaaaagagcggcatggaaagcagggtgcaaagaggtccacagagggtactgattgtcagttagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

371

Amino Acids

41.27

Weight (kDa)

9.24

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008113)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29400 FvH4_1g29400 FvH4_1g29400
malus_domestica	MD12G1014900.v1.1 MD14G1012500.v1.1
prunus_persica	Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1
pyrus_communis	pycom12g01210 pycom14g01070
rosa_chinensis	RchiOBHm_Chr3g0495551
rosa_laevigata	RLG00000022610 RLG00000022611 RLG00000022612
rosa_multiflora	Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390310
rosa_rugosa	Rorug03G0274000 Rorug03G0274100
rosa_samantha	Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600
rosa_wichuraiana	Rw3G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	640
AciI	CCGC	3 cut(s)	100, 660, 1057
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	833, 893
AfaI	GTAC	2 cut(s)	831, 1096
AgsI	TTSAA	7 cut(s)	272, 292, 576, 668, 761, 857, 1010
AluBI	AGCT	9 cut(s)	184, 410, 455, 701, 853, 860, 895, 928, 935
AluI	AGCT	9 cut(s)	184, 410, 455, 701, 853, 860, 895, 928, 935
Alw26I	GTCTC	2 cut(s)	225, 457
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	7 cut(s)	102, 407, 455, 701, 725, 866, 892
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	3 cut(s)	571, 906, 936
AspS9I	GGNCC	2 cut(s)	913, 1083
AsuHPI	GGTGA	3 cut(s)	446, 649, 1037
AsuNHI	GCTAGC	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	2 cut(s)	913, 1083
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	7 cut(s)	89, 419, 442, 688, 712, 878, 904
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BcoDI	GTCTC	2 cut(s)	225, 457
BfaI	CTAG	2 cut(s)	690, 999
BfmI	CTRYAG	1 cut(s)	405
BglII	AGATCT	1 cut(s)	791
BisI	GCNGC	8 cut(s)	103, 408, 456, 702, 726, 867, 893, 1058
BlsI	GCNGC	8 cut(s)	104, 409, 457, 703, 727, 868, 894, 1059
Bme18I	GGWCC	2 cut(s)	913, 1083
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	913, 1083
BmsI	GCATC	5 cut(s)	39, 105, 222, 592, 1018
BmtI	GCTAGC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	2 cut(s)	398, 759
BsaJI	CCNNGG	2 cut(s)	442, 882
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	442, 882
BseGI	GGATG	6 cut(s)	96, 118, 144, 487, 607, 811
BseMII	CTCAG	5 cut(s)	116, 168, 624, 797, 959
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	7 cut(s)	89, 419, 442, 688, 712, 878, 904
BsgI	GTGCAG	2 cut(s)	711, 999
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	293, 793
BsmAI	GTCTC	2 cut(s)	225, 457
BsmFI	GGGAC	2 cut(s)	293, 793
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	307, 791, 808
BspACI	CCGC	3 cut(s)	100, 660, 1057
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	5 cut(s)	117, 169, 623, 796, 958
BspMAI	CTGCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	693
BsrBI	CCGCTC	1 cut(s)	1057
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	442, 882
BssMI	GATC	3 cut(s)	307, 791, 808
BssT1I	CCWWGG	1 cut(s)	882
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	2 cut(s)	590, 747
BstAPI	GCANNNNNTGC	2 cut(s)	102, 1037
BstC8I	GCNNGC	1 cut(s)	691
BstDEI	CTNAG	5 cut(s)	125, 177, 610, 783, 945
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	6 cut(s)	96, 118, 144, 487, 607, 811
BstKTI	GATC	3 cut(s)	310, 794, 811
BstMAI	GTCTC	2 cut(s)	225, 457
BstMBI	GATC	3 cut(s)	307, 791, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 141, 866, 1037, 1066
BstNSI	RCATGY	2 cut(s)	422, 689
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	7 cut(s)	89, 419, 442, 688, 712, 878, 904
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	791
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	6 cut(s)	96, 118, 144, 487, 607, 811
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	913, 1083
Csp6I	GTAC	2 cut(s)	830, 1095
CviAII	CATG	5 cut(s)	276, 419, 460, 686, 1061
CviQI	GTAC	2 cut(s)	830, 1095
DdeI	CTNAG	5 cut(s)	125, 177, 610, 783, 945
DpnI	GATC	3 cut(s)	309, 793, 810
DpnII	GATC	3 cut(s)	307, 791, 808
DraI	TTTAAA	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	590, 747
EarI	CTCTTC	2 cut(s)	590, 747
Eco130I	CCWWGG	1 cut(s)	882
Eco47I	GGWCC	2 cut(s)	913, 1083
Eco57I	CTGAAG	2 cut(s)	833, 893
Eco88I	CYCGRG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	882
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	5 cut(s)	279, 422, 463, 689, 1064
FalI	AAGNNNNNCTT	4 cut(s)	816, 848, 891, 923
FaqI	GGGAC	2 cut(s)	293, 793
FatI	CATG	5 cut(s)	275, 418, 459, 685, 1060
FauNDI	CATATG	1 cut(s)	476
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	8 cut(s)	103, 408, 456, 702, 726, 867, 893, 1058
FokI	GGATG	6 cut(s)	83, 125, 151, 494, 614, 818
Fsp4HI	GCNGC	8 cut(s)	103, 408, 456, 702, 726, 867, 893, 1058
FspBI	CTAG	2 cut(s)	690, 999
GluI	GCNGC	8 cut(s)	103, 408, 456, 702, 726, 867, 893, 1058
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	279, 422, 463, 689, 1064
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	7 cut(s)	79, 218, 541, 618, 772, 781, 973
HphI	GGTGA	3 cut(s)	446, 649, 1037
Hpy166II	GTNNAC	3 cut(s)	472, 641, 1086
Hpy188I	TCNGA	3 cut(s)	178, 249, 813
Hpy188III	TCNNGA	4 cut(s)	504, 586, 677, 911
Hpy8I	GTNNAC	3 cut(s)	472, 641, 1086
HpyAV	CCTTC	4 cut(s)	146, 484, 808, 1004
HpyCH4III	ACNGT	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 141, 866, 1037, 1066
HpyF3I	CTNAG	5 cut(s)	125, 177, 610, 783, 945
Hsp92II	CATG	5 cut(s)	279, 422, 463, 689, 1064
Kzo9I	GATC	3 cut(s)	307, 791, 808
LmnI	GCTCC	2 cut(s)	11, 817
Lsp1109I	GCAGC	7 cut(s)	89, 419, 442, 688, 712, 878, 904
LweI	GCATC	5 cut(s)	39, 105, 222, 592, 1018
MaeI	CTAG	2 cut(s)	690, 999
MaeIII	GTNAC	2 cut(s)	86, 948
MalI	GATC	3 cut(s)	309, 793, 810
MbiI	CCGCTC	1 cut(s)	1057
MboI	GATC	3 cut(s)	307, 791, 808
MflI	RGATCY	1 cut(s)	791
MluCI	AATT	5 cut(s)	199, 292, 386, 623, 1005
MlyI	GAGTC	4 cut(s)	73, 227, 766, 775
MmeI	TCCRAC	2 cut(s)	613, 783
MroXI	GAANNNNTTC	3 cut(s)	571, 906, 936
MseI	TTAA	4 cut(s)	519, 707, 834, 897
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	102, 141, 866, 1037, 1066
NdeI	CATATG	1 cut(s)	476
NdeII	GATC	3 cut(s)	307, 791, 808
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	5 cut(s)	279, 422, 463, 689, 1064
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	2 cut(s)	422, 689
PaeR7I	CTCGAG	1 cut(s)	504
PdmI	GAANNNNTTC	3 cut(s)	571, 906, 936
PfeI	GAWTC	3 cut(s)	541, 618, 973
PkrI	GCNGC	8 cut(s)	104, 409, 457, 703, 727, 868, 894, 1059
PleI	GAGTC	4 cut(s)	73, 226, 766, 775
PpsI	GAGTC	4 cut(s)	73, 226, 766, 775
PspPI	GGNCC	2 cut(s)	913, 1083
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	2 cut(s)	831, 1096
RsaNI	GTAC	2 cut(s)	830, 1095
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	519, 707, 834, 897
SatI	GCNGC	8 cut(s)	103, 408, 456, 702, 726, 867, 893, 1058
Sau3AI	GATC	3 cut(s)	307, 791, 808
Sau96I	GGNCC	2 cut(s)	913, 1083
SchI	GAGTC	4 cut(s)	73, 227, 766, 775
SfaNI	GCATC	5 cut(s)	39, 105, 222, 592, 1018
SfcI	CTRYAG	1 cut(s)	405
Sfr274I	CTCGAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	913, 1083
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	413, 504, 774
SmoI	CTYRAG	3 cut(s)	413, 504, 774
Sse9I	AATT	5 cut(s)	199, 292, 386, 623, 1005
SsiI	CCGC	3 cut(s)	100, 660, 1057
SspMI	CTAG	2 cut(s)	690, 999
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	216, 505
TasI	AATT	5 cut(s)	199, 292, 386, 623, 1005
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	1 cut(s)	1060
TfiI	GAWTC	3 cut(s)	541, 618, 973
Tru1I	TTAA	4 cut(s)	519, 707, 834, 897
Tru9I	TTAA	4 cut(s)	519, 707, 834, 897
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	7 cut(s)	102, 407, 455, 701, 725, 866, 892
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	6 cut(s)	399, 441, 498, 540, 696, 1006
TspGWI	ACGGA	4 cut(s)	177, 459, 579, 985
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	913, 1083
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	2 cut(s)	422, 689
XhoI	CTCGAG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	640
XmnI	GAANNNNTTC	3 cut(s)	571, 906, 936
XspI	CTAG	2 cut(s)	690, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.