Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008113

Physical Location & Seq

Genomic Coordinates Reverse (-)

1154603 .. 1163092

Gene Structure 8490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1012500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGGCTTTGTATTGTACCATTGGTTCATGGTCAAGAATGTTGTCCAAGAACTCAGCCGGAATCCACATTGTTGGATGATTTGAAAGAGCAGGAAGATGTACTTAATCAATCTGTTGGGCAGCTTGAAAGTTCGGAGGCAACAAGATCTGCCTTGGTTTTGCAGCTTAAAGAAGCACTCCAGGATCAAGAATCAAAGCTGGAAGTTGTTCGCACTCAAGTGCAGGTTGCTCGACATCAGATTGAGAGGGTAGGTAATATTAAAAGGAGACTGAACCCCGAAAGCAATATCGTTAACATGACACCTGAGTCTACCAGGGGTTTAGAACCAAATATACCATTACTTCAACAAACTGGCATCCCACCTCAGCCTCCAACGCAGTCCGTGCTTTCTTTTGCCCCTGTCAAAATTACTGATGAAGAGAACAAGAAAGCAGCGGCAGCTGCTGTTGCTGCTAAGCTTGCTGCGTCTACATCTTCTGCACAAATGTTAACGTCTGTTCTTTCATCTCTTGTTGCTGAAGAAGCTGCCTCGATGACCGGTAGCCTAACATCAGCTGGATTTACATCAGGATTATCCATGTTTCCTCCAGAAAAACGGCCCAAGCTTGAGAAACAAATGTCTGATGTTAACAATCCTGATGGTGGCAATGCAGCCTATTTTACGTCTCTCCAGCAGGCAATGACCAGTGTTCCAATTGCGTCCTCAGCAACGATGCAGCCCATGTCCCAAAGTAACCAGATGCAAAATCCTTTTGGTCCGCCACCACCACCTCCAGCGCCATCACCGTCTACTGCAACTCCACCAGCGAATCAATACGTCCAATCCTCTGGTCTTATGGTGGGTGGAGTTCCTTATGGATATGGATCAAATACTTTACCACCTCCACCCCCCATACCTCCACATATTTCAATGAGCATGTCGAGGCCCAGTCAGCAGCAACAGCAGTCGCAGCCTCAGCAGCAGCAACAACAGCAGCAGTTGCAGCCGGCCACTGGGGGTTATTATCGGCCACTGGGTATGGGGTTCTATGGGCAAAGTAATCAGTCAAATACGCAGCCAGTACCTCGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

359

Amino Acids

38.46

Weight (kDa)

5.72

Isoelectric Point (pI)

80.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008113)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29400 FvH4_1g29400 FvH4_1g29400
malus_domestica	MD12G1014900.v1.1 MD14G1012500.v1.1
prunus_persica	Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1
pyrus_communis	pycom12g01210 pycom14g01070
rosa_chinensis	RchiOBHm_Chr3g0495551
rosa_laevigata	RLG00000022610 RLG00000022611 RLG00000022612
rosa_multiflora	Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390310
rosa_rugosa	Rorug03G0274000 Rorug03G0274100
rosa_samantha	Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600
rosa_wichuraiana	Rw3G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	214
AccI	GTMKAC	3 cut(s)	311, 470, 791
AciI	CCGC	2 cut(s)	437, 761
AclWI	GGATC	2 cut(s)	192, 874
AcoI	YGGCCR	2 cut(s)	990, 1010
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	18, 102, 1065
AfiI	CCNNNNNNNGG	2 cut(s)	644, 995
AgeI	ACCGGT	1 cut(s)	539
AgsI	TTSAA	4 cut(s)	85, 128, 347, 912
AjnI	CCWGG	2 cut(s)	180, 314
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	8 cut(s)	124, 166, 199, 443, 460, 527, 557, 607
AluI	AGCT	8 cut(s)	124, 166, 199, 443, 460, 527, 557, 607
Alw26I	GTCTC	2 cut(s)	262, 672
AlwI	GGATC	2 cut(s)	192, 874
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	4 cut(s)	599, 926, 990, 1010
AsiGI	ACCGGT	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	3 cut(s)	600, 758, 927
AsuHPI	GGTGA	1 cut(s)	777
AvaII	GGWCC	1 cut(s)	758
BbvCI	CCTCAGC	3 cut(s)	366, 706, 957
BccI	CCATC	2 cut(s)	635, 790
BceAI	ACGGC	1 cut(s)	614
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	182, 316
BcoDI	GTCTC	2 cut(s)	262, 672
BfoI	RGCGCY	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	146
BlpI	GCTNAGC	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	182, 316
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	600, 758, 927
BmrFI	CCNGG	2 cut(s)	182, 316
BmrI	ACTGGG	3 cut(s)	924, 1005, 1025
BmsI	GCATC	3 cut(s)	366, 705, 732
BmuI	ACTGGG	3 cut(s)	924, 1005, 1025
BpmI	CTGGAG	4 cut(s)	164, 573, 656, 759
Bpu10I	CCTNAGC	3 cut(s)	366, 706, 957
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	201, 629
BsaBI	GATNNNNATC	2 cut(s)	565, 865
BsaJI	CCNNGG	2 cut(s)	153, 315
BsaWI	WCCGGW	1 cut(s)	539
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 995
Bse118I	RCCGGY	2 cut(s)	539, 988
Bse1I	ACTGG	6 cut(s)	358, 687, 930, 1000, 1020, 1061
Bse3DI	GCAATG	2 cut(s)	655, 687
Bse8I	GATNNNNATC	2 cut(s)	565, 865
BseBI	CCWGG	2 cut(s)	182, 316
BseDI	CCNNGG	2 cut(s)	153, 315
BseGI	GGATG	2 cut(s)	82, 357
BseJI	GATNNNNATC	2 cut(s)	565, 865
BseLI	CCNNNNNNNGG	2 cut(s)	644, 995
BseMI	GCAATG	2 cut(s)	655, 687
BseMII	CTCAG	5 cut(s)	68, 297, 380, 720, 971
BseNI	ACTGG	6 cut(s)	358, 687, 930, 1000, 1020, 1061
BsgI	GTGCAG	2 cut(s)	242, 465
BshFI	GGCC	4 cut(s)	601, 928, 992, 1012
BshTI	ACCGGT	1 cut(s)	539
BsiSI	CCGG	3 cut(s)	59, 540, 989
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	2 cut(s)	644, 995
BsmAI	GTCTC	2 cut(s)	262, 672
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	4 cut(s)	601, 928, 992, 1012
Bsp143I	GATC	3 cut(s)	146, 184, 866
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	2 cut(s)	437, 761
BspANI	GGCC	4 cut(s)	601, 928, 992, 1012
BspCNI	CTCAG	5 cut(s)	67, 298, 379, 719, 970
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	192, 874
BsrDI	GCAATG	2 cut(s)	655, 687
BsrFI	RCCGGY	2 cut(s)	539, 988
BsrI	ACTGG	6 cut(s)	358, 687, 930, 1000, 1020, 1061
BssAI	RCCGGY	2 cut(s)	539, 988
BssECI	CCNNGG	2 cut(s)	153, 315
BssMI	GATC	3 cut(s)	146, 184, 866
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	182, 316
Bst4CI	ACNGT	2 cut(s)	789, 1074
Bst6I	CTCTTC	1 cut(s)	414
BstAPI	GCANNNNNTGC	2 cut(s)	385, 982
BstC8I	GCNNGC	3 cut(s)	462, 678, 990
BstDEI	CTNAG	6 cut(s)	54, 306, 366, 456, 706, 957
BstF5I	GGATG	2 cut(s)	82, 357
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	3 cut(s)	149, 187, 869
BstMAI	GTCTC	2 cut(s)	262, 672
BstMBI	GATC	3 cut(s)	146, 184, 866
BstNI	CCWGG	2 cut(s)	182, 316
BstNSI	RCATGY	1 cut(s)	922
BstSCI	CCNGG	2 cut(s)	180, 314
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	2 cut(s)	73, 830
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	601, 928, 992, 1012
BtsCI	GGATG	2 cut(s)	82, 357
BtsIMutI	CAGTG	3 cut(s)	694, 993, 1013
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	3 cut(s)	462, 678, 990
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	1 cut(s)	781
Cfr10I	RCCGGY	2 cut(s)	539, 988
Cfr13I	GGNCC	3 cut(s)	600, 758, 927
CseI	GACGC	2 cut(s)	456, 690
Csp6I	GTAC	3 cut(s)	17, 101, 1064
CspAI	ACCGGT	1 cut(s)	539
CviAII	CATG	5 cut(s)	29, 298, 580, 724, 919
CviQI	GTAC	3 cut(s)	17, 101, 1064
DdeI	CTNAG	6 cut(s)	54, 306, 366, 456, 706, 957
DpnI	GATC	3 cut(s)	148, 186, 868
DpnII	GATC	3 cut(s)	146, 184, 866
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	2 cut(s)	990, 1010
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	180, 314
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	5 cut(s)	32, 301, 583, 727, 922
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	5 cut(s)	28, 297, 579, 723, 918
FblI	GTMKAC	3 cut(s)	311, 470, 791
FokI	GGATG	2 cut(s)	89, 344
GlaI	GCGC	1 cut(s)	780
GsuI	CTGGAG	4 cut(s)	164, 573, 656, 759
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	4 cut(s)	601, 928, 992, 1012
HapII	CCGG	3 cut(s)	59, 540, 989
HgaI	GACGC	2 cut(s)	456, 690
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	5 cut(s)	32, 301, 583, 727, 922
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	3 cut(s)	295, 492, 631
HindII	GTYRAC	3 cut(s)	295, 492, 631
HindIII	AAGCTT	2 cut(s)	458, 605
HinfI	GANTC	4 cut(s)	62, 191, 308, 811
HpaI	GTTAAC	3 cut(s)	295, 492, 631
HpaII	CCGG	3 cut(s)	59, 540, 989
HphI	GGTGA	1 cut(s)	777
Hpy166II	GTNNAC	6 cut(s)	295, 312, 471, 492, 631, 792
Hpy188I	TCNGA	3 cut(s)	136, 240, 625
Hpy188III	TCNNGA	5 cut(s)	35, 188, 570, 590, 638
Hpy8I	GTNNAC	6 cut(s)	295, 312, 471, 492, 631, 792
HpyCH4III	ACNGT	2 cut(s)	789, 1074
HpyCH4IV	ACGT	3 cut(s)	494, 665, 819
HpyCH4V	TGCA	8 cut(s)	163, 223, 482, 653, 718, 745, 797, 985
HpyF3I	CTNAG	6 cut(s)	54, 306, 366, 456, 706, 957
HpySE526I	ACGT	3 cut(s)	494, 665, 819
Hsp92II	CATG	5 cut(s)	32, 301, 583, 727, 922
HspAI	GCGC	1 cut(s)	779
KroI	GCCGGC	1 cut(s)	988
KroNI	GCCGGC	1 cut(s)	990
KspAI	GTTAAC	3 cut(s)	295, 492, 631
Kzo9I	GATC	3 cut(s)	146, 184, 866
LweI	GCATC	3 cut(s)	366, 705, 732
MaeII	ACGT	3 cut(s)	494, 665, 819
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	3 cut(s)	148, 186, 868
MboI	GATC	3 cut(s)	146, 184, 866
MboII	GAAGA	4 cut(s)	107, 431, 468, 533
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	2 cut(s)	408, 696
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	54, 398
MroNI	GCCGGC	1 cut(s)	988
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	6 cut(s)	105, 168, 261, 294, 491, 630
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	3 cut(s)	437, 443, 557
MspI	CCGG	3 cut(s)	59, 540, 989
MspR9I	CCNGG	2 cut(s)	182, 316
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	182, 316
NaeI	GCCGGC	1 cut(s)	990
NdeII	GATC	3 cut(s)	146, 184, 866
NgoMIV	GCCGGC	1 cut(s)	988
NlaIII	CATG	5 cut(s)	32, 301, 583, 727, 922
NspI	RCATGY	1 cut(s)	922
OliI	CACNNNNGTG	1 cut(s)	218
PdiI	GCCGGC	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	62, 191, 811
PfoI	TCCNGGA	1 cut(s)	180
PinAI	ACCGGT	1 cut(s)	539
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	180, 314
PspGI	CCWGG	2 cut(s)	180, 314
PspPI	GGNCC	3 cut(s)	600, 758, 927
PsrI	GAACNNNNNNTAC	4 cut(s)	9, 41, 318, 350
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	146
PvuII	CAGCTG	2 cut(s)	443, 557
RsaI	GTAC	3 cut(s)	18, 102, 1065
RsaNI	GTAC	3 cut(s)	17, 101, 1064
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	6 cut(s)	105, 168, 261, 294, 491, 630
Sau3AI	GATC	3 cut(s)	146, 184, 866
Sau96I	GGNCC	3 cut(s)	600, 758, 927
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	182, 316
SfaNI	GCATC	3 cut(s)	366, 705, 732
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	216, 608
SmoI	CTYRAG	2 cut(s)	216, 608
Sse9I	AATT	2 cut(s)	408, 696
SsiI	CCGC	2 cut(s)	437, 761
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	180, 314
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	789, 1074
TaiI	ACGT	3 cut(s)	497, 668, 822
TaqI	TCGA	4 cut(s)	232, 533, 923, 1069
TasI	AATT	2 cut(s)	408, 696
TatI	WGTACW	1 cut(s)	100
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	62, 191, 811
Tru1I	TTAA	6 cut(s)	105, 168, 261, 294, 491, 630
Tru9I	TTAA	6 cut(s)	105, 168, 261, 294, 491, 630
TscAI	CASTG	3 cut(s)	694, 1000, 1020
TspDTI	ATGAA	3 cut(s)	17, 432, 495
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	3 cut(s)	694, 1000, 1020
VpaK11BI	GGWCC	1 cut(s)	758
XceI	RCATGY	1 cut(s)	922
XmiI	GTMKAC	3 cut(s)	311, 470, 791
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.