Rorug03G0274100

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008113
Physical Location & Seq
Forward (+)
27096508 .. 27097773
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0274100.1

Sequence Viewer

Length: 1053 bp
ATGGGAAAGGCCAATATACTTGCCAAAAGCCCTTCCATGCTTTCAAAAATGCTACTTTTTGGAATACTAGTAATGGCTCACATAGCAGCAACTACAGGTTCCAAGATTGGTGTTTGTTATGGAACCTTGGGAAATGACTTACCGCCAGCACAGGAAGTAATATCTATGTTCGACCAGTATAGAATTCAGAAAATCCGTCTCTATGATCCTAACCAAGGAGCTCTCCAAGCCCTTAGAGGCTCCAACATCGAGGTCATGCTTGGTGTTGAAAATGAACGCCTTCAAGACATTTCTTCTAGCCAAGACAAGGCTAATTCCTGGGTCCAAAGTAATGTCATAAACTATGGCAATGTCAATTTCAAATACATTGTTGTTGGAAACGAAATAGATCCTACAGGTCCACAAGCATCATTTGTTGCCCCTGCAATGGAAAACATTCAAAAAGCAATTACTTCGGAGAATCTTGCCAGTAAAATCAAAGTCTCCACTGCCATTTCCACTGCTGTCCTCAAAGAACCCTCCTACCCTCCCTCAAACGGATCATTCCGTATTGACCATTTACCATTTCTTAATCCCATCATCGCCTTCTTAGCACGCAACCAATCTCCACTGCTCGTTAATCTATACCTTTATTTTACGTACAATCAAAACCGTCAGATTAATATCGAGTATGCTCTTTTTACATCTCCATCACCTGTAGTGCATGATGGCCAGCTTGGGTATCAAAACCTGTTTGATGCTATTATCGATACAGTTTACTCGGCACTAGAGAGAGCAGGCAGCGGTTCCTTGGGAATCGTTGTATCGGAGTCTGGTTGGCCCTCTTCCGGTGGGGATGGAGAAGTGACTACAATTGAGAATGCAAGAATTTACAACTCCAATTTGATCAATCATGTGAAGGCTAATGGGACTCCAAAGAAACCTGGAAGCCCTATAGAGGCTTATGTGTTTGCCATGTTTAATGAGAATCAGAAGGAAGGTCCAGAGATTGAGAGACATTGGGGGCTCTTCTACCCAACCAAACAGCCTAAATATCACATTGATTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

350

Amino Acids

38.48

Weight (kDa)

6.09

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 36 - 349 1.5e-106 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 143, 783
AclWI GGATC 3 cut(s) 200, 383, 547
AcoI YGGCCR 1 cut(s) 709
AcsI RAATTY 2 cut(s) 183, 867
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 6 cut(s) 215, 307, 427, 536, 827, 937
AgsI TTSAA 6 cut(s) 45, 269, 284, 361, 440, 1048
AhlI ACTAGT 1 cut(s) 67
AjnI CCWGG 2 cut(s) 317, 922
AluBI AGCT 2 cut(s) 221, 715
AluI AGCT 2 cut(s) 221, 715
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 3 cut(s) 203, 487, 988
AlwI GGATC 3 cut(s) 200, 383, 547
AoxI GGCC 3 cut(s) 9, 709, 818
ApeKI GCWGC 2 cut(s) 86, 780
ApoI RAATTY 2 cut(s) 183, 867
AseI ATTAAT 1 cut(s) 660
Asp700I GAANNNNTTC 2 cut(s) 279, 435
AspS9I GGNCC 4 cut(s) 322, 398, 819, 980
AsuHPI GGTGA 1 cut(s) 684
AvaII GGWCC 3 cut(s) 322, 398, 980
BalI TGGCCA 1 cut(s) 711
BanII GRGCYC 2 cut(s) 223, 1008
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 98, 792
BccI CCATC 4 cut(s) 584, 697, 701, 830
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 2 cut(s) 319, 924
BclI TGATCA 1 cut(s) 885
BcoDI GTCTC 3 cut(s) 203, 487, 988
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 3 cut(s) 68, 297, 767
BfmI CTRYAG 4 cut(s) 93, 393, 696, 933
BisI GCNGC 2 cut(s) 87, 781
BlsI GCNGC 2 cut(s) 88, 782
Bme1390I CCNGG 2 cut(s) 319, 924
Bme18I GGWCC 3 cut(s) 322, 398, 980
BmgT120I GGNCC 4 cut(s) 322, 398, 819, 980
BmiI GGNNCC 5 cut(s) 100, 124, 241, 323, 787
BmrFI CCNGG 2 cut(s) 319, 924
BmsI GCATC 2 cut(s) 416, 727
Bsa29I ATCGAT 1 cut(s) 747
BsaAI YACGTR 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 126, 214, 318, 789
BsaWI WCCGGW 1 cut(s) 827
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 307, 427, 536, 827, 937
Bse1I ACTGG 2 cut(s) 175, 468
Bse3DI GCAATG 2 cut(s) 355, 432
Bse8I GATNNNNATC 1 cut(s) 662
BseBI CCWGG 2 cut(s) 319, 924
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 4 cut(s) 126, 214, 318, 789
BseGI GGATG 1 cut(s) 841
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 6 cut(s) 215, 307, 427, 536, 827, 937
BseMI GCAATG 2 cut(s) 355, 432
BseNI ACTGG 2 cut(s) 175, 468
BseXI GCAGC 2 cut(s) 98, 792
BshFI GGCC 3 cut(s) 11, 711, 820
BshVI ATCGAT 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 828
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 6 cut(s) 215, 307, 427, 536, 827, 937
BsmAI GTCTC 3 cut(s) 203, 487, 988
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 922
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 3 cut(s) 11, 711, 820
Bsp1286I GDGCHC 2 cut(s) 223, 1008
Bsp143I GATC 4 cut(s) 205, 388, 539, 885
BspACI CCGC 2 cut(s) 143, 783
BspANI GGCC 3 cut(s) 11, 711, 820
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 5 cut(s) 100, 124, 241, 323, 787
BspPI GGATC 3 cut(s) 200, 383, 547
BspQI GCTCTTC 1 cut(s) 1013
BsrDI GCAATG 2 cut(s) 355, 432
BsrI ACTGG 2 cut(s) 175, 468
BssECI CCNNGG 4 cut(s) 126, 214, 318, 789
BssMI GATC 4 cut(s) 205, 388, 539, 885
BssT1I CCWWGG 3 cut(s) 126, 214, 789
Bst2UI CCWGG 2 cut(s) 319, 924
Bst4CI ACNGT 2 cut(s) 653, 754
Bst6I CTCTTC 2 cut(s) 829, 1013
BstBAI YACGTR 1 cut(s) 639
BstC8I GCNNGC 4 cut(s) 147, 595, 713, 778
BstDEI CTNAG 2 cut(s) 233, 589
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 841
BstKTI GATC 4 cut(s) 208, 391, 542, 888
BstMAI GTCTC 3 cut(s) 203, 487, 988
BstMBI GATC 4 cut(s) 205, 388, 539, 885
BstMWI GCNNNNNNNGC 3 cut(s) 83, 227, 590
BstNI CCWGG 2 cut(s) 319, 924
BstSCI CCNGG 2 cut(s) 317, 922
BstSFI CTRYAG 4 cut(s) 93, 393, 696, 933
BstSNI TACGTA 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 98, 792
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 747
BsuRI GGCC 3 cut(s) 11, 711, 820
BsuTUI ATCGAT 1 cut(s) 747
BtgZI GCGATG 1 cut(s) 565
BtsCI GGATG 1 cut(s) 841
BtsI GCAGTG 3 cut(s) 486, 498, 608
BtsIMutI CAGTG 3 cut(s) 486, 498, 608
Cac8I GCNNGC 4 cut(s) 147, 595, 713, 778
Cfr13I GGNCC 4 cut(s) 322, 398, 819, 980
ClaI ATCGAT 1 cut(s) 747
Csp6I GTAC 1 cut(s) 640
CviAII CATG 5 cut(s) 37, 256, 704, 893, 955
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 2 cut(s) 233, 589
DpnI GATC 4 cut(s) 207, 390, 541, 887
DpnII GATC 4 cut(s) 205, 388, 539, 885
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 2 cut(s) 829, 1013
EarI CTCTTC 2 cut(s) 829, 1013
Ecl136II GAGCTC 1 cut(s) 221
Eco105I TACGTA 1 cut(s) 639
Eco130I CCWWGG 3 cut(s) 126, 214, 789
Eco24I GRGCYC 2 cut(s) 223, 1008
Eco47I GGWCC 3 cut(s) 322, 398, 980
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 317, 922
EcoT14I CCWWGG 3 cut(s) 126, 214, 789
EcoT38I GRGCYC 2 cut(s) 223, 1008
ErhI CCWWGG 3 cut(s) 126, 214, 789
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 40, 259, 707, 896, 958
FaqI GGGAC 1 cut(s) 922
FatI CATG 5 cut(s) 36, 255, 703, 892, 954
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 2 cut(s) 87, 781
FokI GGATG 1 cut(s) 848
FriOI GRGCYC 2 cut(s) 223, 1008
Fsp4HI GCNGC 2 cut(s) 87, 781
FspBI CTAG 3 cut(s) 68, 297, 767
GluI GCNGC 2 cut(s) 87, 781
HaeIII GGCC 3 cut(s) 11, 711, 820
HapII CCGG 1 cut(s) 828
Hin1II CATG 5 cut(s) 40, 259, 707, 896, 958
HinfI GANTC 5 cut(s) 460, 795, 809, 910, 967
HpaII CCGG 1 cut(s) 828
HphI GGTGA 1 cut(s) 684
Hpy166II GTNNAC 2 cut(s) 401, 757
Hpy188I TCNGA 5 cut(s) 189, 457, 657, 808, 972
Hpy188III TCNNGA 2 cut(s) 284, 983
Hpy8I GTNNAC 2 cut(s) 401, 757
HpyAV CCTTC 6 cut(s) 42, 290, 595, 892, 967, 971
HpyCH4III ACNGT 2 cut(s) 653, 754
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 3 cut(s) 425, 703, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 227, 590
HpyF3I CTNAG 2 cut(s) 233, 589
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 5 cut(s) 40, 259, 707, 896, 958
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 4 cut(s) 205, 388, 539, 885
LguI GCTCTTC 1 cut(s) 1013
LmnI GCTCC 2 cut(s) 218, 245
Lsp1109I GCAGC 2 cut(s) 98, 792
LweI GCATC 2 cut(s) 416, 727
MaeI CTAG 3 cut(s) 68, 297, 767
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 1 cut(s) 844
MalI GATC 4 cut(s) 207, 390, 541, 887
MboI GATC 4 cut(s) 205, 388, 539, 885
MboII GAAGA 3 cut(s) 285, 816, 1000
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 223, 1008
MlsI TGGCCA 1 cut(s) 711
MluCI AATT 7 cut(s) 183, 313, 355, 447, 852, 867, 880
MluNI TGGCCA 1 cut(s) 711
MlyI GAGTC 2 cut(s) 818, 904
MmeI TCCRAC 2 cut(s) 267, 355
MnlI CCTC 8 cut(s) 230, 244, 518, 529, 537, 541, 832, 931
Mox20I TGGCCA 1 cut(s) 711
MroXI GAANNNNTTC 2 cut(s) 279, 435
MscI TGGCCA 1 cut(s) 711
MseI TTAA 4 cut(s) 570, 618, 660, 960
Msp20I TGGCCA 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 783
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 2 cut(s) 319, 924
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 2 cut(s) 319, 924
MwoI GCNNNNNNNGC 3 cut(s) 83, 227, 590
NdeII GATC 4 cut(s) 205, 388, 539, 885
NlaIII CATG 5 cut(s) 40, 259, 707, 896, 958
NlaIV GGNNCC 5 cut(s) 100, 124, 241, 323, 787
NmeAIII GCCGAG 1 cut(s) 740
NmuCI GTSAC 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 1013
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 2 cut(s) 279, 435
PfeI GAWTC 3 cut(s) 460, 795, 967
PkrI GCNGC 2 cut(s) 88, 782
PleI GAGTC 2 cut(s) 817, 904
PpsI GAGTC 2 cut(s) 817, 904
Ppu21I YACGTR 1 cut(s) 639
PshBI ATTAAT 1 cut(s) 660
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 317, 922
PspGI CCWGG 2 cut(s) 317, 922
PspN4I GGNNCC 5 cut(s) 100, 124, 241, 323, 787
PspPI GGNCC 4 cut(s) 322, 398, 819, 980
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
SacI GAGCTC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 1013
SaqAI TTAA 4 cut(s) 570, 618, 660, 960
SatI GCNGC 2 cut(s) 87, 781
Sau3AI GATC 4 cut(s) 205, 388, 539, 885
Sau96I GGNCC 4 cut(s) 322, 398, 819, 980
SchI GAGTC 2 cut(s) 818, 904
ScrFI CCNGG 2 cut(s) 319, 924
SduI GDGCHC 2 cut(s) 223, 1008
SfaNI GCATC 2 cut(s) 416, 727
SfcI CTRYAG 4 cut(s) 93, 393, 696, 933
SinI GGWCC 3 cut(s) 322, 398, 980
SnaBI TACGTA 1 cut(s) 639
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 7 cut(s) 183, 313, 355, 447, 852, 867, 880
SsiI CCGC 2 cut(s) 143, 783
SspMI CTAG 3 cut(s) 68, 297, 767
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 317, 922
StyI CCWWGG 3 cut(s) 126, 214, 789
TaaI ACNGT 2 cut(s) 653, 754
TaiI ACGT 1 cut(s) 641
TaqI TCGA 4 cut(s) 171, 249, 666, 747
TasI AATT 7 cut(s) 183, 313, 355, 447, 852, 867, 880
TfiI GAWTC 3 cut(s) 460, 795, 967
Tru1I TTAA 4 cut(s) 570, 618, 660, 960
Tru9I TTAA 4 cut(s) 570, 618, 660, 960
TscAI CASTG 3 cut(s) 493, 505, 615
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 2 cut(s) 86, 780
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 3 cut(s) 185, 536, 552
TspRI CASTG 3 cut(s) 493, 505, 615
VpaK11BI GGWCC 3 cut(s) 322, 398, 980
VspI ATTAAT 1 cut(s) 660
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 2 cut(s) 183, 867
XmnI GAANNNNTTC 2 cut(s) 279, 435
XspI CTAG 3 cut(s) 68, 297, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.