pycom12g01210

Regulation of nuclear pre-mRNA domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
1036041 .. 1044355
8315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01210.6

Sequence Viewer

Length: 1443 bp
ATGAATTCTGGAAGTTCCTTCCTGCAGCTCTTAAGCATGTTTATGAAAATGGTCGATCAACAGGGAAAGAAAGCTGCCACAAGACTGGTTGACATATGGGAAGAAAGAAAGGTTTTTGGGTCTCGAGGGCATAGTCTTAAAGATGATATGATGGGAAGGAATCCTCCTGCTCCACCTGCAAGCAATGGAAAAAGTTCAAATCCTATCAAGATAGTGAAGAGGGATGCACACTCAGTTAGACTTAAATTGGCTGTTGGAGGTCTGCCAGAAAAAATACTTACCGCATTTCAACCTGTTCTTGATGCACATCTTACGGAAGAAGCTGCTTTAAACAAGTGTAATGCTGCTGTACTTTATGTGGGTAAAATTGATGAAGACGTTGAAAACACCTTGATTCATGGAACTCAGCAGGGATCCACATTGTTGGATGATTTGAAAGAGCAAGAAGATGCACTTAATCAATCTGTTGGGCAACTTGAGAGCTCGGAGGCAACAAGATCTGCCTTGGTTTTGCAACTCAGAGAAGCACTTCAGGATCAAGAAGCAAAGCTGGAAGTTGTTCGCACTCAATTGCAGGTTGCTCGACATCAGATTGAGAGAGTAAGTAGTATTAAAAGGAGACTGAGTTTGCCCCAGGTTCTGAACCCCGAAAGCAATATTGTTAACATGACACCTGAATCTACCAGGGGGTTAGAACCAAATTTACCATTAGTCCAACAAACTGGCCTCCCACCTCAGCCTCCAATGCAGCCTATGGTTTCTTTTGCCCCTGTAAAAACTACCGATGAAGAGAACAAGAAAGCAGCAGCGGCTGCTGTGGCTGCTAAGCTAGCAGCATCTACCTCTTCTGCACAGATGTTAACGTCTGTTCTTTCATCTCTTGTTGCTGAAGAAGCTGCCTCTATGACTGGTAGCCTGAAATCAGCTGGTTTTACGTCAGGATTATCCATGTTTCCTCCAGAAAAACGGCCCAAGCTTGAGAAACAAATGTCTGATGGTAACAATCCTGATGGTGGCAATGCAGCCTTTTTTACGCCTCTCCAACAGCAGGCAATGACCAGTGTTCCAATCGCGTCATCAGCAACCATGCAGCCTATGTCCCACAGTAACCAGATGCAAAGTCCTTTTAGTCCGCTGCCACCACCCCTGGCACCATCACCATCTACTGCAACTACACCAGCGAATCAATATGTCCAATCTTCTGGTCTTATGGTGGGTGGAATTCCTTACGGATATGGATCAAATACCTTACCGCCTCCACCGCCTATACCTCCACATATTTCAATGAGTATGTCAAGGCCCAGTCCGCCGCAACAGCAGTCACAGCCTCAGCAGCAGCAGCAGTTGCAGCCGGCTGCTGGGGGTTATTATCGGCCACTGGGTATGGGGTTCTACGGGCAAAGCAATCAGTCAAATACGCAGCCAGTAGTACCTCGACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

51.54

Weight (kDa)

8.46

Isoelectric Point (pI)

65.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
Acc36I ACCTGC 2 cut(s) 184, 565
AccB1I GGYRCC 1 cut(s) 1150
AccII CGCG 1 cut(s) 1073
AciI CCGC 7 cut(s) 282, 809, 1133, 1253, 1262, 1307, 1310
AclWI GGATC 4 cut(s) 408, 421, 543, 1246
AcoI YGGCCR 1 cut(s) 1373
AcsI RAATTY 3 cut(s) 4, 700, 1221
AcuI CTGAAG 2 cut(s) 515, 909
AfaI GTAC 2 cut(s) 351, 1431
AfiI CCNNNNNNNGG 3 cut(s) 1013, 1048, 1358
AflII CTTAAG 1 cut(s) 31
AgsI TTSAA 5 cut(s) 198, 290, 383, 436, 1284
AjnI CCWGG 3 cut(s) 633, 683, 1146
AluBI AGCT 9 cut(s) 28, 74, 323, 483, 550, 829, 896, 926, 976
AluI AGCT 9 cut(s) 28, 74, 323, 483, 550, 829, 896, 926, 976
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 2 cut(s) 126, 613
AlwI GGATC 4 cut(s) 408, 421, 543, 1246
AlwNI CAGNNNCTG 2 cut(s) 640, 812
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 4 cut(s) 724, 968, 1298, 1373
ApoI RAATTY 3 cut(s) 4, 700, 1221
Asp700I GAANNNNTTC 3 cut(s) 193, 528, 558
AspS9I GGNCC 2 cut(s) 969, 1299
AsuHPI GGTGA 1 cut(s) 1149
AsuNHI GCTAGC 1 cut(s) 829
AvaI CYCGRG 1 cut(s) 123
BamHI GGATCC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 1150
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 485
BbvCI CCTCAGC 2 cut(s) 735, 1329
BccI CCATC 5 cut(s) 145, 989, 1004, 1162, 1168
BceAI ACGGC 1 cut(s) 983
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 3 cut(s) 635, 685, 1148
BcoDI GTCTC 2 cut(s) 126, 613
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 1 cut(s) 23
BfrI CTTAAG 1 cut(s) 31
BfuAI ACCTGC 2 cut(s) 184, 565
BglII AGATCT 1 cut(s) 497
BlpI GCTNAGC 1 cut(s) 825
Bme1390I CCNGG 3 cut(s) 635, 685, 1148
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 969, 1299
BmiI GGNNCC 2 cut(s) 415, 1152
BmrFI CCNGG 3 cut(s) 635, 685, 1148
BmrI ACTGGG 2 cut(s) 1296, 1388
BmsI GCATC 5 cut(s) 214, 292, 439, 845, 1104
BmtI GCTAGC 1 cut(s) 833
BmuI ACTGGG 2 cut(s) 1296, 1388
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 2 cut(s) 735, 1329
Bpu1102I GCTNAGC 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 497, 998
BsaBI GATNNNNATC 2 cut(s) 306, 1237
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 504, 633, 684, 1146
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 3 cut(s) 1013, 1048, 1358
Bse118I RCCGGY 1 cut(s) 1351
Bse1I ACTGG 7 cut(s) 90, 727, 913, 1059, 1302, 1383, 1424
Bse3DI GCAATG 3 cut(s) 190, 1024, 1059
Bse8I GATNNNNATC 2 cut(s) 306, 1237
BseBI CCWGG 3 cut(s) 635, 685, 1148
BseDI CCNNGG 4 cut(s) 504, 633, 684, 1146
BseGI GGATG 2 cut(s) 229, 433
BseJI GATNNNNATC 2 cut(s) 306, 1237
BseLI CCNNNNNNNGG 3 cut(s) 1013, 1048, 1358
BseMI GCAATG 3 cut(s) 190, 1024, 1059
BseMII CTCAG 6 cut(s) 246, 419, 532, 614, 749, 1343
BseNI ACTGG 7 cut(s) 90, 727, 913, 1059, 1302, 1383, 1424
BseYI CCCAGC 1 cut(s) 1358
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 1073
BshFI GGCC 4 cut(s) 726, 970, 1300, 1375
BshNI GGYRCC 1 cut(s) 1150
BsiHKAI GWGCWC 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 1352
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 3 cut(s) 1013, 1048, 1358
BsmAI GTCTC 2 cut(s) 126, 613
BsmFI GGGAC 1 cut(s) 1084
BsnI GGCC 4 cut(s) 726, 970, 1300, 1375
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 5 cut(s) 55, 413, 497, 535, 1238
Bsp1720I GCTNAGC 1 cut(s) 825
BspACI CCGC 7 cut(s) 282, 809, 1133, 1253, 1262, 1307, 1310
BspANI GGCC 4 cut(s) 726, 970, 1300, 1375
BspCNI CTCAG 6 cut(s) 245, 418, 531, 615, 748, 1342
BspFNI CGCG 1 cut(s) 1073
BspLI GGNNCC 2 cut(s) 415, 1152
BspMAI CTGCAG 1 cut(s) 27
BspMI ACCTGC 2 cut(s) 184, 565
BspOI GCTAGC 1 cut(s) 833
BspPI GGATC 4 cut(s) 408, 421, 543, 1246
BspT107I GGYRCC 1 cut(s) 1150
BspTI CTTAAG 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 3 cut(s) 190, 1024, 1059
BsrFI RCCGGY 1 cut(s) 1351
BsrI ACTGG 7 cut(s) 90, 727, 913, 1059, 1302, 1383, 1424
BssAI RCCGGY 1 cut(s) 1351
BssECI CCNNGG 4 cut(s) 504, 633, 684, 1146
BssMI GATC 5 cut(s) 55, 413, 497, 535, 1238
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 3 cut(s) 635, 685, 1148
Bst4CI ACNGT 2 cut(s) 1106, 1440
Bst6I CTCTTC 3 cut(s) 212, 783, 850
BstAFI CTTAAG 1 cut(s) 31
BstAPI GCANNNNNTGC 2 cut(s) 812, 1345
BstC8I GCNNGC 4 cut(s) 181, 831, 1050, 1353
BstDEI CTNAG 7 cut(s) 232, 405, 518, 623, 735, 825, 1329
BstF5I GGATG 2 cut(s) 229, 433
BstFNI CGCG 1 cut(s) 1073
BstKTI GATC 5 cut(s) 58, 416, 500, 538, 1241
BstMAI GTCTC 2 cut(s) 126, 613
BstMBI GATC 5 cut(s) 55, 413, 497, 535, 1238
BstNI CCWGG 3 cut(s) 635, 685, 1148
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 3 cut(s) 633, 683, 1146
BstSFI CTRYAG 1 cut(s) 23
BstUI CGCG 1 cut(s) 1073
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 413, 497
BstXI CCANNNNNNTGG 4 cut(s) 85, 424, 722, 1202
BstYI RGATCY 2 cut(s) 413, 497
BsuRI GGCC 4 cut(s) 726, 970, 1300, 1375
BtsCI GGATG 2 cut(s) 229, 433
BtsIMutI CAGTG 2 cut(s) 1066, 1376
BveI ACCTGC 2 cut(s) 184, 565
Cac8I GCNNGC 4 cut(s) 181, 831, 1050, 1353
CaiI CAGNNNCTG 2 cut(s) 640, 812
Cfr10I RCCGGY 1 cut(s) 1351
Cfr13I GGNCC 2 cut(s) 969, 1299
CseI GACGC 1 cut(s) 1062
Csp6I GTAC 2 cut(s) 350, 1430
CviAII CATG 5 cut(s) 37, 398, 667, 949, 1087
CviQI GTAC 2 cut(s) 350, 1430
DdeI CTNAG 7 cut(s) 232, 405, 518, 623, 735, 825, 1329
DpnI GATC 5 cut(s) 57, 415, 499, 537, 1240
DpnII GATC 5 cut(s) 55, 413, 497, 535, 1238
DraI TTTAAA 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 1373
Eam1104I CTCTTC 3 cut(s) 212, 783, 850
EarI CTCTTC 3 cut(s) 212, 783, 850
EciI GGCGGA 1 cut(s) 1296
Ecl136II GAGCTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 483
Eco57I CTGAAG 2 cut(s) 515, 909
Eco88I CYCGRG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 483
EcoRI GAATTC 2 cut(s) 4, 1221
EcoRII CCWGG 3 cut(s) 633, 683, 1146
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 5 cut(s) 40, 401, 670, 952, 1090
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 1084
FatI CATG 5 cut(s) 36, 397, 666, 948, 1086
FauNDI CATATG 1 cut(s) 95
FokI GGATG 2 cut(s) 236, 440
FriOI GRGCYC 1 cut(s) 485
FspBI CTAG 1 cut(s) 830
GsaI CCCAGC 1 cut(s) 1362
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 4 cut(s) 726, 970, 1300, 1375
HapII CCGG 1 cut(s) 1352
HgaI GACGC 1 cut(s) 1062
Hin1II CATG 5 cut(s) 40, 401, 670, 952, 1090
HincII GTYRAC 3 cut(s) 91, 664, 861
HindII GTYRAC 3 cut(s) 91, 664, 861
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 4 cut(s) 160, 394, 677, 1183
HpaI GTTAAC 2 cut(s) 664, 861
HpaII CCGG 1 cut(s) 1352
HphI GGTGA 1 cut(s) 1149
Hpy166II GTNNAC 3 cut(s) 91, 664, 861
Hpy188I TCNGA 5 cut(s) 487, 521, 591, 642, 994
Hpy188III TCNNGA 9 cut(s) 9, 123, 208, 299, 533, 539, 939, 959, 1007
Hpy8I GTNNAC 3 cut(s) 91, 664, 861
HpyAV CCTTC 2 cut(s) 28, 150
HpyCH4III ACNGT 2 cut(s) 1106, 1440
HpyCH4IV ACGT 3 cut(s) 378, 863, 935
HpyF3I CTNAG 7 cut(s) 232, 405, 518, 623, 735, 825, 1329
HpySE526I ACGT 3 cut(s) 378, 863, 935
Hsp92II CATG 5 cut(s) 40, 401, 670, 952, 1090
KroI GCCGGC 1 cut(s) 1351
KroNI GCCGGC 1 cut(s) 1353
KspAI GTTAAC 2 cut(s) 664, 861
Kzo9I GATC 5 cut(s) 55, 413, 497, 535, 1238
LmnI GCTCC 1 cut(s) 175
LweI GCATC 5 cut(s) 214, 292, 439, 845, 1104
MaeI CTAG 1 cut(s) 830
MaeII ACGT 3 cut(s) 378, 863, 935
MaeIII GTNAC 3 cut(s) 998, 1106, 1320
MalI GATC 5 cut(s) 57, 415, 499, 537, 1240
MboI GATC 5 cut(s) 55, 413, 497, 535, 1238
MboII GAAGA 9 cut(s) 113, 229, 329, 386, 458, 800, 837, 902, 1191
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 2 cut(s) 413, 497
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 6 cut(s) 4, 245, 366, 569, 700, 1221
MmeI TCCRAC 4 cut(s) 235, 405, 739, 1066
MroNI GCCGGC 1 cut(s) 1351
MroXI GAANNNNTTC 3 cut(s) 193, 528, 558
MseI TTAA 8 cut(s) 32, 138, 243, 329, 456, 612, 663, 860
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 3 cut(s) 809, 926, 1135
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 1 cut(s) 1352
MspR9I CCNGG 3 cut(s) 635, 685, 1148
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 3 cut(s) 635, 685, 1148
MvnI CGCG 1 cut(s) 1073
NaeI GCCGGC 1 cut(s) 1353
NdeI CATATG 1 cut(s) 95
NdeII GATC 5 cut(s) 55, 413, 497, 535, 1238
NgoMIV GCCGGC 1 cut(s) 1351
NheI GCTAGC 1 cut(s) 829
NlaIII CATG 5 cut(s) 40, 401, 670, 952, 1090
NlaIV GGNNCC 2 cut(s) 415, 1152
NmuCI GTSAC 1 cut(s) 1320
NspI RCATGY 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 184
PdiI GCCGGC 1 cut(s) 1353
PdmI GAANNNNTTC 3 cut(s) 193, 528, 558
PfeI GAWTC 4 cut(s) 160, 394, 677, 1183
Psp124BI GAGCTC 1 cut(s) 485
Psp6I CCWGG 3 cut(s) 633, 683, 1146
PspFI CCCAGC 1 cut(s) 1358
PspGI CCWGG 3 cut(s) 633, 683, 1146
PspN4I GGNNCC 2 cut(s) 415, 1152
PspPI GGNCC 2 cut(s) 969, 1299
PsrI GAACNNNNNNTAC 2 cut(s) 687, 719
PstI CTGCAG 1 cut(s) 27
PstNI CAGNNNCTG 2 cut(s) 640, 812
PsuI RGATCY 2 cut(s) 413, 497
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 2 cut(s) 351, 1431
RsaNI GTAC 2 cut(s) 350, 1430
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 8 cut(s) 32, 138, 243, 329, 456, 612, 663, 860
Sau3AI GATC 5 cut(s) 55, 413, 497, 535, 1238
Sau96I GGNCC 2 cut(s) 969, 1299
ScrFI CCNGG 3 cut(s) 635, 685, 1148
SduI GDGCHC 1 cut(s) 485
SfaNI GCATC 5 cut(s) 214, 292, 439, 845, 1104
SfcI CTRYAG 1 cut(s) 23
Sfr274I CTCGAG 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 4 cut(s) 31, 123, 476, 977
SmoI CTYRAG 4 cut(s) 31, 123, 476, 977
Sse9I AATT 6 cut(s) 4, 245, 366, 569, 700, 1221
SsiI CCGC 7 cut(s) 282, 809, 1133, 1253, 1262, 1307, 1310
SspI AATATT 1 cut(s) 658
SspMI CTAG 1 cut(s) 830
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 633, 683, 1146
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 1106, 1440
TaiI ACGT 3 cut(s) 381, 866, 938
TaqI TCGA 4 cut(s) 54, 124, 583, 1435
TasI AATT 6 cut(s) 4, 245, 366, 569, 700, 1221
TatI WGTACW 1 cut(s) 349
TauI GCSGC 2 cut(s) 812, 1312
TfiI GAWTC 4 cut(s) 160, 394, 677, 1183
Tru1I TTAA 8 cut(s) 32, 138, 243, 329, 456, 612, 663, 860
Tru9I TTAA 8 cut(s) 32, 138, 243, 329, 456, 612, 663, 860
TscAI CASTG 2 cut(s) 1066, 1383
TseFI GTSAC 1 cut(s) 1320
Tsp45I GTSAC 1 cut(s) 1320
TspDTI ATGAA 6 cut(s) 17, 59, 386, 387, 801, 864
TspGWI ACGGA 2 cut(s) 329, 1245
TspRI CASTG 2 cut(s) 1066, 1383
Vha464I CTTAAG 1 cut(s) 31
XapI RAATTY 3 cut(s) 4, 700, 1221
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 123
XmnI GAANNNNTTC 3 cut(s) 193, 528, 558
XspI CTAG 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.