Regulation of nuclear pre-mRNA domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g29400 FvH4_1g29400 FvH4_1g29400 |
| malus_domestica | MD12G1014900.v1.1 MD14G1012500.v1.1 |
| prunus_persica | Prupe.7G025900_v2.0.a1 Prupe.7G025900_v2.0.a1 |
| pyrus_communis | pycom12g01210 pycom14g01070 |
| rosa_chinensis | RchiOBHm_Chr3g0495551 |
| rosa_laevigata | RLG00000022610 RLG00000022611 RLG00000022612 |
| rosa_multiflora | Rmu_sc0004755.1_g000001 Rmu_sc0006163.1_g000001 Rmu_sc0014579.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00390310 |
| rosa_rugosa | Rorug03G0274000 Rorug03G0274100 |
| rosa_samantha | Rh3AG321900 Rh3BG357000 Rh3CG353800 Rh3DG356600 |
| rosa_wichuraiana | Rw3G028130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 184 |
| Acc36I | ACCTGC | 2 cut(s) | 184, 565 |
| AccB1I | GGYRCC | 1 cut(s) | 1150 |
| AccII | CGCG | 1 cut(s) | 1073 |
| AciI | CCGC | 7 cut(s) | 282, 809, 1133, 1253, 1262, 1307, 1310 |
| AclWI | GGATC | 4 cut(s) | 408, 421, 543, 1246 |
| AcoI | YGGCCR | 1 cut(s) | 1373 |
| AcsI | RAATTY | 3 cut(s) | 4, 700, 1221 |
| AcuI | CTGAAG | 2 cut(s) | 515, 909 |
| AfaI | GTAC | 2 cut(s) | 351, 1431 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1013, 1048, 1358 |
| AflII | CTTAAG | 1 cut(s) | 31 |
| AgsI | TTSAA | 5 cut(s) | 198, 290, 383, 436, 1284 |
| AjnI | CCWGG | 3 cut(s) | 633, 683, 1146 |
| AluBI | AGCT | 9 cut(s) | 28, 74, 323, 483, 550, 829, 896, 926, 976 |
| AluI | AGCT | 9 cut(s) | 28, 74, 323, 483, 550, 829, 896, 926, 976 |
| Alw21I | GWGCWC | 1 cut(s) | 485 |
| Alw26I | GTCTC | 2 cut(s) | 126, 613 |
| AlwI | GGATC | 4 cut(s) | 408, 421, 543, 1246 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 640, 812 |
| Ama87I | CYCGRG | 1 cut(s) | 123 |
| AoxI | GGCC | 4 cut(s) | 724, 968, 1298, 1373 |
| ApoI | RAATTY | 3 cut(s) | 4, 700, 1221 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 193, 528, 558 |
| AspS9I | GGNCC | 2 cut(s) | 969, 1299 |
| AsuHPI | GGTGA | 1 cut(s) | 1149 |
| AsuNHI | GCTAGC | 1 cut(s) | 829 |
| AvaI | CYCGRG | 1 cut(s) | 123 |
| BamHI | GGATCC | 1 cut(s) | 413 |
| BanI | GGYRCC | 1 cut(s) | 1150 |
| BanII | GRGCYC | 1 cut(s) | 485 |
| BbsI | GAAGAC | 1 cut(s) | 381 |
| Bbv12I | GWGCWC | 1 cut(s) | 485 |
| BbvCI | CCTCAGC | 2 cut(s) | 735, 1329 |
| BccI | CCATC | 5 cut(s) | 145, 989, 1004, 1162, 1168 |
| BceAI | ACGGC | 1 cut(s) | 983 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 563, 597 |
| BciT130I | CCWGG | 3 cut(s) | 635, 685, 1148 |
| BcoDI | GTCTC | 2 cut(s) | 126, 613 |
| BfaI | CTAG | 1 cut(s) | 830 |
| BfmI | CTRYAG | 1 cut(s) | 23 |
| BfrI | CTTAAG | 1 cut(s) | 31 |
| BfuAI | ACCTGC | 2 cut(s) | 184, 565 |
| BglII | AGATCT | 1 cut(s) | 497 |
| BlpI | GCTNAGC | 1 cut(s) | 825 |
| Bme1390I | CCNGG | 3 cut(s) | 635, 685, 1148 |
| BmeT110I | CYCGRG | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 2 cut(s) | 969, 1299 |
| BmiI | GGNNCC | 2 cut(s) | 415, 1152 |
| BmrFI | CCNGG | 3 cut(s) | 635, 685, 1148 |
| BmrI | ACTGGG | 2 cut(s) | 1296, 1388 |
| BmsI | GCATC | 5 cut(s) | 214, 292, 439, 845, 1104 |
| BmtI | GCTAGC | 1 cut(s) | 833 |
| BmuI | ACTGGG | 2 cut(s) | 1296, 1388 |
| BpiI | GAAGAC | 1 cut(s) | 381 |
| BpmI | CTGGAG | 1 cut(s) | 942 |
| Bpu10I | CCTNAGC | 2 cut(s) | 735, 1329 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 825 |
| BpuEI | CTTGAG | 2 cut(s) | 497, 998 |
| BsaBI | GATNNNNATC | 2 cut(s) | 306, 1237 |
| BsaI | GGTCTC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 4 cut(s) | 504, 633, 684, 1146 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 610, 640 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1013, 1048, 1358 |
| Bse118I | RCCGGY | 1 cut(s) | 1351 |
| Bse1I | ACTGG | 7 cut(s) | 90, 727, 913, 1059, 1302, 1383, 1424 |
| Bse3DI | GCAATG | 3 cut(s) | 190, 1024, 1059 |
| Bse8I | GATNNNNATC | 2 cut(s) | 306, 1237 |
| BseBI | CCWGG | 3 cut(s) | 635, 685, 1148 |
| BseDI | CCNNGG | 4 cut(s) | 504, 633, 684, 1146 |
| BseGI | GGATG | 2 cut(s) | 229, 433 |
| BseJI | GATNNNNATC | 2 cut(s) | 306, 1237 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1013, 1048, 1358 |
| BseMI | GCAATG | 3 cut(s) | 190, 1024, 1059 |
| BseMII | CTCAG | 6 cut(s) | 246, 419, 532, 614, 749, 1343 |
| BseNI | ACTGG | 7 cut(s) | 90, 727, 913, 1059, 1302, 1383, 1424 |
| BseYI | CCCAGC | 1 cut(s) | 1358 |
| BsgI | GTGCAG | 1 cut(s) | 834 |
| Bsh1236I | CGCG | 1 cut(s) | 1073 |
| BshFI | GGCC | 4 cut(s) | 726, 970, 1300, 1375 |
| BshNI | GGYRCC | 1 cut(s) | 1150 |
| BsiHKAI | GWGCWC | 1 cut(s) | 485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 123 |
| BsiSI | CCGG | 1 cut(s) | 1352 |
| BslFI | GGGAC | 1 cut(s) | 1084 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1013, 1048, 1358 |
| BsmAI | GTCTC | 2 cut(s) | 126, 613 |
| BsmFI | GGGAC | 1 cut(s) | 1084 |
| BsnI | GGCC | 4 cut(s) | 726, 970, 1300, 1375 |
| Bso31I | GGTCTC | 1 cut(s) | 126 |
| BsoBI | CYCGRG | 1 cut(s) | 123 |
| Bsp1286I | GDGCHC | 1 cut(s) | 485 |
| Bsp143I | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 825 |
| BspACI | CCGC | 7 cut(s) | 282, 809, 1133, 1253, 1262, 1307, 1310 |
| BspANI | GGCC | 4 cut(s) | 726, 970, 1300, 1375 |
| BspCNI | CTCAG | 6 cut(s) | 245, 418, 531, 615, 748, 1342 |
| BspFNI | CGCG | 1 cut(s) | 1073 |
| BspLI | GGNNCC | 2 cut(s) | 415, 1152 |
| BspMAI | CTGCAG | 1 cut(s) | 27 |
| BspMI | ACCTGC | 2 cut(s) | 184, 565 |
| BspOI | GCTAGC | 1 cut(s) | 833 |
| BspPI | GGATC | 4 cut(s) | 408, 421, 543, 1246 |
| BspT107I | GGYRCC | 1 cut(s) | 1150 |
| BspTI | CTTAAG | 1 cut(s) | 31 |
| BspTNI | GGTCTC | 1 cut(s) | 126 |
| BsrDI | GCAATG | 3 cut(s) | 190, 1024, 1059 |
| BsrFI | RCCGGY | 1 cut(s) | 1351 |
| BsrI | ACTGG | 7 cut(s) | 90, 727, 913, 1059, 1302, 1383, 1424 |
| BssAI | RCCGGY | 1 cut(s) | 1351 |
| BssECI | CCNNGG | 4 cut(s) | 504, 633, 684, 1146 |
| BssMI | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| BssT1I | CCWWGG | 1 cut(s) | 504 |
| Bst2UI | CCWGG | 3 cut(s) | 635, 685, 1148 |
| Bst4CI | ACNGT | 2 cut(s) | 1106, 1440 |
| Bst6I | CTCTTC | 3 cut(s) | 212, 783, 850 |
| BstAFI | CTTAAG | 1 cut(s) | 31 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 812, 1345 |
| BstC8I | GCNNGC | 4 cut(s) | 181, 831, 1050, 1353 |
| BstDEI | CTNAG | 7 cut(s) | 232, 405, 518, 623, 735, 825, 1329 |
| BstF5I | GGATG | 2 cut(s) | 229, 433 |
| BstFNI | CGCG | 1 cut(s) | 1073 |
| BstKTI | GATC | 5 cut(s) | 58, 416, 500, 538, 1241 |
| BstMAI | GTCTC | 2 cut(s) | 126, 613 |
| BstMBI | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| BstNI | CCWGG | 3 cut(s) | 635, 685, 1148 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSCI | CCNGG | 3 cut(s) | 633, 683, 1146 |
| BstSFI | CTRYAG | 1 cut(s) | 23 |
| BstUI | CGCG | 1 cut(s) | 1073 |
| BstV2I | GAAGAC | 1 cut(s) | 381 |
| BstX2I | RGATCY | 2 cut(s) | 413, 497 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 85, 424, 722, 1202 |
| BstYI | RGATCY | 2 cut(s) | 413, 497 |
| BsuRI | GGCC | 4 cut(s) | 726, 970, 1300, 1375 |
| BtsCI | GGATG | 2 cut(s) | 229, 433 |
| BtsIMutI | CAGTG | 2 cut(s) | 1066, 1376 |
| BveI | ACCTGC | 2 cut(s) | 184, 565 |
| Cac8I | GCNNGC | 4 cut(s) | 181, 831, 1050, 1353 |
| CaiI | CAGNNNCTG | 2 cut(s) | 640, 812 |
| Cfr10I | RCCGGY | 1 cut(s) | 1351 |
| Cfr13I | GGNCC | 2 cut(s) | 969, 1299 |
| CseI | GACGC | 1 cut(s) | 1062 |
| Csp6I | GTAC | 2 cut(s) | 350, 1430 |
| CviAII | CATG | 5 cut(s) | 37, 398, 667, 949, 1087 |
| CviQI | GTAC | 2 cut(s) | 350, 1430 |
| DdeI | CTNAG | 7 cut(s) | 232, 405, 518, 623, 735, 825, 1329 |
| DpnI | GATC | 5 cut(s) | 57, 415, 499, 537, 1240 |
| DpnII | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| DraI | TTTAAA | 1 cut(s) | 330 |
| EaeI | YGGCCR | 1 cut(s) | 1373 |
| Eam1104I | CTCTTC | 3 cut(s) | 212, 783, 850 |
| EarI | CTCTTC | 3 cut(s) | 212, 783, 850 |
| EciI | GGCGGA | 1 cut(s) | 1296 |
| Ecl136II | GAGCTC | 1 cut(s) | 483 |
| Eco130I | CCWWGG | 1 cut(s) | 504 |
| Eco24I | GRGCYC | 1 cut(s) | 485 |
| Eco31I | GGTCTC | 1 cut(s) | 126 |
| Eco53kI | GAGCTC | 1 cut(s) | 483 |
| Eco57I | CTGAAG | 2 cut(s) | 515, 909 |
| Eco88I | CYCGRG | 1 cut(s) | 123 |
| EcoICRI | GAGCTC | 1 cut(s) | 483 |
| EcoRI | GAATTC | 2 cut(s) | 4, 1221 |
| EcoRII | CCWGG | 3 cut(s) | 633, 683, 1146 |
| EcoT14I | CCWWGG | 1 cut(s) | 504 |
| EcoT38I | GRGCYC | 1 cut(s) | 485 |
| ErhI | CCWWGG | 1 cut(s) | 504 |
| FaeI | CATG | 5 cut(s) | 40, 401, 670, 952, 1090 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 438, 470 |
| FaqI | GGGAC | 1 cut(s) | 1084 |
| FatI | CATG | 5 cut(s) | 36, 397, 666, 948, 1086 |
| FauNDI | CATATG | 1 cut(s) | 95 |
| FokI | GGATG | 2 cut(s) | 236, 440 |
| FriOI | GRGCYC | 1 cut(s) | 485 |
| FspBI | CTAG | 1 cut(s) | 830 |
| GsaI | CCCAGC | 1 cut(s) | 1362 |
| GsuI | CTGGAG | 1 cut(s) | 942 |
| HaeIII | GGCC | 4 cut(s) | 726, 970, 1300, 1375 |
| HapII | CCGG | 1 cut(s) | 1352 |
| HgaI | GACGC | 1 cut(s) | 1062 |
| Hin1II | CATG | 5 cut(s) | 40, 401, 670, 952, 1090 |
| HincII | GTYRAC | 3 cut(s) | 91, 664, 861 |
| HindII | GTYRAC | 3 cut(s) | 91, 664, 861 |
| HindIII | AAGCTT | 1 cut(s) | 974 |
| HinfI | GANTC | 4 cut(s) | 160, 394, 677, 1183 |
| HpaI | GTTAAC | 2 cut(s) | 664, 861 |
| HpaII | CCGG | 1 cut(s) | 1352 |
| HphI | GGTGA | 1 cut(s) | 1149 |
| Hpy166II | GTNNAC | 3 cut(s) | 91, 664, 861 |
| Hpy188I | TCNGA | 5 cut(s) | 487, 521, 591, 642, 994 |
| Hpy188III | TCNNGA | 9 cut(s) | 9, 123, 208, 299, 533, 539, 939, 959, 1007 |
| Hpy8I | GTNNAC | 3 cut(s) | 91, 664, 861 |
| HpyAV | CCTTC | 2 cut(s) | 28, 150 |
| HpyCH4III | ACNGT | 2 cut(s) | 1106, 1440 |
| HpyCH4IV | ACGT | 3 cut(s) | 378, 863, 935 |
| HpyF3I | CTNAG | 7 cut(s) | 232, 405, 518, 623, 735, 825, 1329 |
| HpySE526I | ACGT | 3 cut(s) | 378, 863, 935 |
| Hsp92II | CATG | 5 cut(s) | 40, 401, 670, 952, 1090 |
| KroI | GCCGGC | 1 cut(s) | 1351 |
| KroNI | GCCGGC | 1 cut(s) | 1353 |
| KspAI | GTTAAC | 2 cut(s) | 664, 861 |
| Kzo9I | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| LmnI | GCTCC | 1 cut(s) | 175 |
| LweI | GCATC | 5 cut(s) | 214, 292, 439, 845, 1104 |
| MaeI | CTAG | 1 cut(s) | 830 |
| MaeII | ACGT | 3 cut(s) | 378, 863, 935 |
| MaeIII | GTNAC | 3 cut(s) | 998, 1106, 1320 |
| MalI | GATC | 5 cut(s) | 57, 415, 499, 537, 1240 |
| MboI | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| MboII | GAAGA | 9 cut(s) | 113, 229, 329, 386, 458, 800, 837, 902, 1191 |
| MfeI | CAATTG | 1 cut(s) | 569 |
| MflI | RGATCY | 2 cut(s) | 413, 497 |
| MhlI | GDGCHC | 1 cut(s) | 485 |
| MluCI | AATT | 6 cut(s) | 4, 245, 366, 569, 700, 1221 |
| MmeI | TCCRAC | 4 cut(s) | 235, 405, 739, 1066 |
| MroNI | GCCGGC | 1 cut(s) | 1351 |
| MroXI | GAANNNNTTC | 3 cut(s) | 193, 528, 558 |
| MseI | TTAA | 8 cut(s) | 32, 138, 243, 329, 456, 612, 663, 860 |
| MslI | CAYNNNNRTG | 1 cut(s) | 41 |
| MspA1I | CMGCKG | 3 cut(s) | 809, 926, 1135 |
| MspCI | CTTAAG | 1 cut(s) | 31 |
| MspI | CCGG | 1 cut(s) | 1352 |
| MspR9I | CCNGG | 3 cut(s) | 635, 685, 1148 |
| MunI | CAATTG | 1 cut(s) | 569 |
| MvaI | CCWGG | 3 cut(s) | 635, 685, 1148 |
| MvnI | CGCG | 1 cut(s) | 1073 |
| NaeI | GCCGGC | 1 cut(s) | 1353 |
| NdeI | CATATG | 1 cut(s) | 95 |
| NdeII | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| NgoMIV | GCCGGC | 1 cut(s) | 1351 |
| NheI | GCTAGC | 1 cut(s) | 829 |
| NlaIII | CATG | 5 cut(s) | 40, 401, 670, 952, 1090 |
| NlaIV | GGNNCC | 2 cut(s) | 415, 1152 |
| NmuCI | GTSAC | 1 cut(s) | 1320 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PaeR7I | CTCGAG | 1 cut(s) | 123 |
| PaqCI | CACCTGC | 1 cut(s) | 184 |
| PdiI | GCCGGC | 1 cut(s) | 1353 |
| PdmI | GAANNNNTTC | 3 cut(s) | 193, 528, 558 |
| PfeI | GAWTC | 4 cut(s) | 160, 394, 677, 1183 |
| Psp124BI | GAGCTC | 1 cut(s) | 485 |
| Psp6I | CCWGG | 3 cut(s) | 633, 683, 1146 |
| PspFI | CCCAGC | 1 cut(s) | 1358 |
| PspGI | CCWGG | 3 cut(s) | 633, 683, 1146 |
| PspN4I | GGNNCC | 2 cut(s) | 415, 1152 |
| PspPI | GGNCC | 2 cut(s) | 969, 1299 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 687, 719 |
| PstI | CTGCAG | 1 cut(s) | 27 |
| PstNI | CAGNNNCTG | 2 cut(s) | 640, 812 |
| PsuI | RGATCY | 2 cut(s) | 413, 497 |
| PvuII | CAGCTG | 1 cut(s) | 926 |
| RsaI | GTAC | 2 cut(s) | 351, 1431 |
| RsaNI | GTAC | 2 cut(s) | 350, 1430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 41 |
| SacI | GAGCTC | 1 cut(s) | 485 |
| SaqAI | TTAA | 8 cut(s) | 32, 138, 243, 329, 456, 612, 663, 860 |
| Sau3AI | GATC | 5 cut(s) | 55, 413, 497, 535, 1238 |
| Sau96I | GGNCC | 2 cut(s) | 969, 1299 |
| ScrFI | CCNGG | 3 cut(s) | 635, 685, 1148 |
| SduI | GDGCHC | 1 cut(s) | 485 |
| SfaNI | GCATC | 5 cut(s) | 214, 292, 439, 845, 1104 |
| SfcI | CTRYAG | 1 cut(s) | 23 |
| Sfr274I | CTCGAG | 1 cut(s) | 123 |
| SlaI | CTCGAG | 1 cut(s) | 123 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 41 |
| SmlI | CTYRAG | 4 cut(s) | 31, 123, 476, 977 |
| SmoI | CTYRAG | 4 cut(s) | 31, 123, 476, 977 |
| Sse9I | AATT | 6 cut(s) | 4, 245, 366, 569, 700, 1221 |
| SsiI | CCGC | 7 cut(s) | 282, 809, 1133, 1253, 1262, 1307, 1310 |
| SspI | AATATT | 1 cut(s) | 658 |
| SspMI | CTAG | 1 cut(s) | 830 |
| SstI | GAGCTC | 1 cut(s) | 485 |
| StyD4I | CCNGG | 3 cut(s) | 633, 683, 1146 |
| StyI | CCWWGG | 1 cut(s) | 504 |
| TaaI | ACNGT | 2 cut(s) | 1106, 1440 |
| TaiI | ACGT | 3 cut(s) | 381, 866, 938 |
| TaqI | TCGA | 4 cut(s) | 54, 124, 583, 1435 |
| TasI | AATT | 6 cut(s) | 4, 245, 366, 569, 700, 1221 |
| TatI | WGTACW | 1 cut(s) | 349 |
| TauI | GCSGC | 2 cut(s) | 812, 1312 |
| TfiI | GAWTC | 4 cut(s) | 160, 394, 677, 1183 |
| Tru1I | TTAA | 8 cut(s) | 32, 138, 243, 329, 456, 612, 663, 860 |
| Tru9I | TTAA | 8 cut(s) | 32, 138, 243, 329, 456, 612, 663, 860 |
| TscAI | CASTG | 2 cut(s) | 1066, 1383 |
| TseFI | GTSAC | 1 cut(s) | 1320 |
| Tsp45I | GTSAC | 1 cut(s) | 1320 |
| TspDTI | ATGAA | 6 cut(s) | 17, 59, 386, 387, 801, 864 |
| TspGWI | ACGGA | 2 cut(s) | 329, 1245 |
| TspRI | CASTG | 2 cut(s) | 1066, 1383 |
| Vha464I | CTTAAG | 1 cut(s) | 31 |
| XapI | RAATTY | 3 cut(s) | 4, 700, 1221 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XhoI | CTCGAG | 1 cut(s) | 123 |
| XmnI | GAANNNNTTC | 3 cut(s) | 193, 528, 558 |
| XspI | CTAG | 1 cut(s) | 830 |