FvH4_1g29730

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
23074523 .. 23081293
6771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29730.t12

Sequence Viewer

Length: 1140 bp
ATGGCTACGTTATCAGTTGCTCCACTTGTTCCTCTTCTTCCTCCACGGCAATCATTCGCGTTCTTCAAGCTTCCCTCATCCACTAATGGACCTCTTCTCCCCTTTCCCATGCTTACCCTTGTACCCACTAAGCGCTCCCGTTCCCGTTTCGTGTTCCCCAAAGCCGCCTCCTCTGTTTACGCCACCATTGACGACCTCGAGCTCGACACTGTCAATATTGCCGACGACGTAACCCAGTTAATTGGGAGAACACCAATGGTATACCTCAATAAAGTTAGCGGAGGCTGTGTGGCGAATATTGCAGCAAAGCTCGAGTCTATGGAACCCTGCCGAAGTGTCAAGGATAGAATTGGCGGTAGCATGATATCTAATGCAGAAGAAAGTGGATTAATATCTCCTGGGAAGAATGTATTGGTTGAACCAACTAGTGGAAATACAGGACTGGGAATTGCTTTTGTCGCTGCTACTAAAGGGTACAAACTCATAGTGACGATGCCTGCATCTGTAAATCTTGAAAGAAGGGTTCTATTACGCGCTTTTGGAGCGGAAGTTGTTTTGACAGATCCAGAGAAGGGTTTGAAAGGGGCTTTAGATAAAGCTGAACAAATTGTTCTCAGCACCCCTAATTCATTTATGCTTCAACAATTTGATAATACTGCAAATGCAAAGATCCATTTTGATACTACCGGGCCAGAGATATGGGAGGATACCATTGGAAGTGTTGACATTTTAGTTGCTGCTATTGGAACAGGTGGTACTGTCACAGGCACTGGGCGTTACCTGAAAGCGATGAACAAAGAAATAAAGGTAGTAGGTGTAGAACCTGCAGAGCGGAGTGTGATCTCTGGAGAAAATCTAGGTTACGTGCCAAGCATTTTGGATGTTAATCTGCTTGATGAAGTCATGAAGGTTACCAATGATGAAGCTGTTGAAATGGCAAGGCAATTAGCGTTGAAGGAAGGTTTGCTGGTTGGTATTTCATCAGGAGCTGCTGCAGCTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAACGCTGGAAAACTTATTGCGGTTATATTTCCAAGCTTTGGTGAGAGGTATATTCCAACTGTACTTTTCCAATCCTTATATGAAGATGTTCAGAAGATGCGAGCAACATGA

Protein Analysis

380

Amino Acids

40.38

Weight (kDa)

5.75

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 77 - 323 6.3e-58 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 832
AccB7I CCANNNNNTGG 2 cut(s) 428, 1067
AccBSI CCGCTC 2 cut(s) 545, 832
AccI GTMKAC 1 cut(s) 261
AccII CGCG 2 cut(s) 59, 534
AciI CCGC 6 cut(s) 165, 279, 354, 545, 832, 1049
AclWI GGATC 2 cut(s) 557, 664
AfaI GTAC 4 cut(s) 123, 476, 757, 1092
AfeI AGCGCT 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 428, 572, 1067
AgsI TTSAA 7 cut(s) 67, 419, 515, 580, 641, 932, 955
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 8 cut(s) 70, 202, 310, 599, 926, 989, 998, 1065
AluI AGCT 8 cut(s) 70, 202, 310, 599, 926, 989, 998, 1065
Alw21I GWGCWC 1 cut(s) 204
AlwI GGATC 2 cut(s) 557, 664
AlwNI CAGNNNCTG 3 cut(s) 770, 989, 1001
Ama87I CYCGRG 2 cut(s) 197, 311
Aor51HI AGCGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 689
ApeKI GCWGC 8 cut(s) 302, 461, 737, 989, 992, 995, 998, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AseI ATTAAT 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 2 cut(s) 135, 536
AspS9I GGNCC 2 cut(s) 89, 689
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 1 cut(s) 1082
AvaI CYCGRG 2 cut(s) 197, 311
AvaII GGWCC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 1027
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 8 cut(s) 314, 448, 724, 976, 979, 985, 988, 1007
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 700
BcnI CCSGG 1 cut(s) 688
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 2 cut(s) 426, 857
BfmI CTRYAG 2 cut(s) 825, 993
BfoI RGCGCY 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 832
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 9 cut(s) 165, 303, 462, 738, 990, 993, 996, 999, 1002
BlsI GCNGC 9 cut(s) 166, 304, 463, 739, 991, 994, 997, 1000, 1003
Bme1390I CCNGG 2 cut(s) 399, 688
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 2 cut(s) 197, 311
BmgT120I GGNCC 2 cut(s) 89, 689
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 2 cut(s) 399, 688
BmrI ACTGGG 3 cut(s) 229, 452, 780
BmsI GCATC 3 cut(s) 483, 509, 1116
BmuI ACTGGG 3 cut(s) 229, 452, 780
BpiI GAAGAC 1 cut(s) 1027
BpmI CTGGAG 1 cut(s) 867
BpuMI CCSGG 1 cut(s) 688
BsaAI YACGTR 1 cut(s) 865
BsaBI GATNNNNATC 2 cut(s) 391, 885
BsaJI CCNNGG 2 cut(s) 44, 398
BsaXI ACNNNNNCTCC 6 cut(s) 81, 111, 273, 303, 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 572, 1067
Bse1I ACTGG 3 cut(s) 235, 447, 775
Bse8I GATNNNNATC 2 cut(s) 391, 885
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 44, 398
BseGI GGATG 2 cut(s) 77, 886
BseJI GATNNNNATC 2 cut(s) 391, 885
BseLI CCNNNNNNNGG 3 cut(s) 428, 572, 1067
BseMII CTCAG 2 cut(s) 628, 1017
BseNI ACTGG 3 cut(s) 235, 447, 775
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 8 cut(s) 314, 448, 724, 976, 979, 985, 988, 1007
Bsh1236I CGCG 2 cut(s) 59, 534
BshFI GGCC 1 cut(s) 691
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 2 cut(s) 197, 311
BsiSI CCGG 1 cut(s) 687
BslI CCNNNNNNNGG 3 cut(s) 428, 572, 1067
BsnI GGCC 1 cut(s) 691
BsoBI CYCGRG 2 cut(s) 197, 311
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 562, 669, 840
BspACI CCGC 6 cut(s) 165, 279, 354, 545, 832, 1049
BspANI GGCC 1 cut(s) 691
BspCNI CTCAG 2 cut(s) 627, 1018
BspFNI CGCG 2 cut(s) 59, 534
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 2 cut(s) 829, 997
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 2 cut(s) 557, 664
BsrBI CCGCTC 2 cut(s) 545, 832
BsrI ACTGG 3 cut(s) 235, 447, 775
BssECI CCNNGG 2 cut(s) 44, 398
BssMI GATC 3 cut(s) 562, 669, 840
BssNAI GTATAC 1 cut(s) 262
Bst1107I GTATAC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 211, 760, 1090
Bst6I CTCTTC 2 cut(s) 39, 99
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstBAI YACGTR 1 cut(s) 865
BstC8I GCNNGC 2 cut(s) 498, 1131
BstDEI CTNAG 3 cut(s) 129, 614, 1026
BstDSI CCRYGG 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 910
BstF5I GGATG 2 cut(s) 77, 886
BstFNI CGCG 2 cut(s) 59, 534
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 135, 536
BstKTI GATC 3 cut(s) 565, 672, 843
BstMBI GATC 3 cut(s) 562, 669, 840
BstMWI GCNNNNNNNGC 6 cut(s) 299, 458, 542, 995, 998, 1001
BstNI CCWGG 1 cut(s) 399
BstPI GGTNACC 1 cut(s) 910
BstSCI CCNGG 2 cut(s) 397, 686
BstSFI CTRYAG 2 cut(s) 825, 993
BstUI CGCG 2 cut(s) 59, 534
BstV1I GCAGC 8 cut(s) 314, 448, 724, 976, 979, 985, 988, 1007
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 2 cut(s) 562, 669
BstXI CCANNNNNNTGG 2 cut(s) 242, 699
BstYI RGATCY 2 cut(s) 562, 669
BstZ17I GTATAC 1 cut(s) 262
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 803
BtsCI GGATG 2 cut(s) 77, 886
BtsIMutI CAGTG 2 cut(s) 207, 768
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 498, 1131
CaiI CAGNNNCTG 3 cut(s) 770, 989, 1001
CciI TCATGA 1 cut(s) 903
CfoI GCGC 2 cut(s) 135, 536
Cfr13I GGNCC 2 cut(s) 89, 689
Csp6I GTAC 4 cut(s) 122, 475, 756, 1091
CviAII CATG 4 cut(s) 109, 361, 904, 1137
CviQI GTAC 4 cut(s) 122, 475, 756, 1091
DdeI CTNAG 3 cut(s) 129, 614, 1026
DpnI GATC 3 cut(s) 564, 671, 842
DpnII GATC 3 cut(s) 562, 669, 840
Eam1104I CTCTTC 2 cut(s) 39, 99
EarI CTCTTC 2 cut(s) 39, 99
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 89
Eco47III AGCGCT 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 197, 311
Eco91I GGTNACC 1 cut(s) 910
EcoICRI GAGCTC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 910
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 4 cut(s) 112, 364, 907, 1140
FatI CATG 4 cut(s) 108, 360, 903, 1136
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 9 cut(s) 165, 303, 462, 738, 990, 993, 996, 999, 1002
FokI GGATG 2 cut(s) 64, 893
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 9 cut(s) 165, 303, 462, 738, 990, 993, 996, 999, 1002
FspBI CTAG 2 cut(s) 426, 857
GlaI GCGC 2 cut(s) 134, 535
GluI GCNGC 9 cut(s) 165, 303, 462, 738, 990, 993, 996, 999, 1002
GsuI CTGGAG 1 cut(s) 867
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 691
HapII CCGG 1 cut(s) 687
HhaI GCGC 2 cut(s) 135, 536
Hin1II CATG 4 cut(s) 112, 364, 907, 1140
Hin6I GCGC 2 cut(s) 133, 534
HinP1I GCGC 2 cut(s) 133, 534
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 2 cut(s) 68, 1063
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 687
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 3 cut(s) 178, 262, 724
Hpy188I TCNGA 1 cut(s) 1122
Hpy188III TCNNGA 5 cut(s) 512, 566, 846, 904, 984
Hpy8I GTNNAC 3 cut(s) 178, 262, 724
Hpy99I CGWCG 2 cut(s) 227, 230
HpyAV CCTTC 5 cut(s) 513, 565, 901, 949, 953
HpyCH4III ACNGT 3 cut(s) 211, 760, 1090
HpyCH4IV ACGT 3 cut(s) 8, 228, 864
HpyCH4V TGCA 8 cut(s) 302, 374, 500, 659, 665, 827, 995, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 458, 542, 995, 998, 1001
HpyF3I CTNAG 3 cut(s) 129, 614, 1026
HpySE526I ACGT 3 cut(s) 8, 228, 864
Hsp92II CATG 4 cut(s) 112, 364, 907, 1140
HspAI GCGC 2 cut(s) 133, 534
Kzo9I GATC 3 cut(s) 562, 669, 840
LmnI GCTCC 4 cut(s) 25, 140, 542, 986
Lsp1109I GCAGC 8 cut(s) 314, 448, 724, 976, 979, 985, 988, 1007
LweI GCATC 3 cut(s) 483, 509, 1116
MaeI CTAG 2 cut(s) 426, 857
MaeII ACGT 3 cut(s) 8, 228, 864
MaeIII GTNAC 6 cut(s) 229, 487, 760, 776, 860, 910
MalI GATC 3 cut(s) 564, 671, 842
MbiI CCGCTC 2 cut(s) 545, 832
MboI GATC 3 cut(s) 562, 669, 840
MboII GAAGA 9 cut(s) 26, 29, 55, 86, 389, 415, 1032, 1124, 1135
MflI RGATCY 2 cut(s) 562, 669
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 7 cut(s) 240, 348, 447, 606, 625, 644, 944
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 1109
MroXI GAANNNNTTC 1 cut(s) 1116
MseI TTAA 3 cut(s) 239, 389, 885
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 2 cut(s) 399, 688
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 2 cut(s) 59, 534
MwoI GCNNNNNNNGC 6 cut(s) 299, 458, 542, 995, 998, 1001
NciI CCSGG 1 cut(s) 688
NdeII GATC 3 cut(s) 562, 669, 840
NlaIII CATG 4 cut(s) 112, 364, 907, 1140
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 487, 760
PaeR7I CTCGAG 2 cut(s) 197, 311
PagI TCATGA 1 cut(s) 903
PdmI GAANNNNTTC 1 cut(s) 1116
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 2 cut(s) 428, 1067
PkrI GCNGC 9 cut(s) 166, 304, 463, 739, 991, 994, 997, 1000, 1003
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 865
PshBI ATTAAT 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 397
PspEI GGTNACC 1 cut(s) 910
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 2 cut(s) 89, 689
PspXI VCTCGAGB 2 cut(s) 197, 311
PsrI GAACNNNNNNTAC 2 cut(s) 739, 771
PstI CTGCAG 2 cut(s) 829, 997
PstNI CAGNNNCTG 3 cut(s) 770, 989, 1001
PsuI RGATCY 2 cut(s) 562, 669
PsyI GACNNNGTC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 4 cut(s) 123, 476, 757, 1092
RsaNI GTAC 4 cut(s) 122, 475, 756, 1091
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 239, 389, 885
SatI GCNGC 9 cut(s) 165, 303, 462, 738, 990, 993, 996, 999, 1002
Sau3AI GATC 3 cut(s) 562, 669, 840
Sau96I GGNCC 2 cut(s) 89, 689
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 399, 688
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 3 cut(s) 483, 509, 1116
SfcI CTRYAG 2 cut(s) 825, 993
Sfr274I CTCGAG 2 cut(s) 197, 311
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 2 cut(s) 197, 311
SmlI CTYRAG 2 cut(s) 197, 311
SmoI CTYRAG 2 cut(s) 197, 311
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 7 cut(s) 240, 348, 447, 606, 625, 644, 944
SsiI CCGC 6 cut(s) 165, 279, 354, 545, 832, 1049
SspI AATATT 2 cut(s) 217, 298
SspMI CTAG 2 cut(s) 426, 857
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 397, 686
TaaI ACNGT 3 cut(s) 211, 760, 1090
TaiI ACGT 3 cut(s) 11, 231, 867
TaqI TCGA 3 cut(s) 198, 204, 312
TasI AATT 7 cut(s) 240, 348, 447, 606, 625, 644, 944
TatI WGTACW 1 cut(s) 1090
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 3 cut(s) 239, 389, 885
Tru9I TTAA 3 cut(s) 239, 389, 885
TscAI CASTG 2 cut(s) 214, 775
TseFI GTSAC 2 cut(s) 487, 760
TseI GCWGC 8 cut(s) 302, 461, 737, 989, 992, 995, 998, 1001
Tsp45I GTSAC 2 cut(s) 487, 760
TspDTI ATGAA 7 cut(s) 618, 806, 912, 920, 936, 969, 1125
TspRI CASTG 2 cut(s) 214, 775
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 2 cut(s) 428, 1067
VpaK11BI GGWCC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 389
XhoI CTCGAG 2 cut(s) 197, 311
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 2 cut(s) 426, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.