MD12G1013800.v1.1

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
1438416 .. 1443622
5207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1013800.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGCTATATTATCACCTCCTCTGCTTCTTCCGCTTCCCCTCTCATCTCCCCCAAAACCCCACCGTTTCGCGTCCTTCAAGCTCGCCGGCAATTCCACCAATGGAGCTCTTCTCGGAGTACAGCTCGCAAAACGGCACCGTCTCGTGTTTGCCAAAGCCGCCTCCTCTGTCTACGCCATCAGAGAAGAGCTCGACGCTGTCAATATCGCCGAGGACGTCACGCAGTTGATCGGGAGCACACCCATGGTATACCTCAACAAAGTTAGCGAAGGTTGTGTGGCAAATATTGCAGCAAAGCTTGAATCTATGGAACCGTGCCGAAGTGTCAAGGATAGAATTGGCTGTAGCATGATATCTAAAGCTGAGAAAAGTGGGTTTATATCTCCTGGGAAGACTGTATTAGTTGAACCAACTAGTGGAAATACAGGACTTGGTATTGCTTTTGTTGCTGCAACTAAAGGGTATAAACTTATAGTCACCATGCCGGCGTCCATAGATATTGAAAGAAGGATTCTTTTACGGGCATTCGGGGCAGAGGTTGTTTTGACGGATCCAGAAAAGGGTTTGAAAGGAGCGTTAGATAAAGCTGGGGAAATTGTTCTTAACACACCAAATTCATATATGCTTCAACAGTTTGATAATGCTGCGAATGCAGAGATCCATTTTGATACTACTGGGCCAGAAATATGGGAGGATACCATTGGTAATGTTGACATATTTGTTGCTGCTATTGGAACTGGTGGTACTGTTACAGGCACTGGCCGTTACCTGAAAATGATGAACAAGGAGATAAAGGTAGTGGGTGTGGAACCTGCAGAGAGGAGTGTAATATCTGGAGAAAATCCAGGTTATTTACCAAGCATTTTGGACGTTAATTTACTTGATGAGGTCATCAAGGTTACCAACGATGAAGCTGTTGAAATGGCAAGGAGGCTAGCATTGGAGGAAGGCTTGCTGGTTGGTATCTCATCAGGTGCTGCTGCGGCTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAACATTGGAAAACTTATTGCGGTTATATTTCCAAGCTTTGGTGAGAGGTATATTCCCACTGTACTTTTCCAATCAATTTACGAAGAGGTTCAGAAGATGCGGGGAAAGTAA

Protein Analysis

376

Amino Acids

40.04

Weight (kDa)

6.07

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 73 - 349 1.1e-65 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 135
AccB7I CCANNNNNTGG 2 cut(s) 416, 1055
AccI GTMKAC 2 cut(s) 171, 249
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 32, 159, 983, 1037, 1117
AclWI GGATC 3 cut(s) 545, 558, 652
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 1 cut(s) 613
AcyI GRCGYC 2 cut(s) 216, 488
AfaI GTAC 3 cut(s) 120, 745, 1080
AfiI CCNNNNNNNGG 3 cut(s) 416, 560, 1055
AgsI TTSAA 7 cut(s) 79, 302, 407, 503, 568, 629, 920
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 2 cut(s) 385, 844
AluBI AGCT 9 cut(s) 82, 107, 124, 190, 298, 362, 587, 914, 1053
AluI AGCT 9 cut(s) 82, 107, 124, 190, 298, 362, 587, 914, 1053
Alw21I GWGCWC 3 cut(s) 109, 192, 239
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 3 cut(s) 545, 558, 652
AlwNI CAGNNNCTG 2 cut(s) 758, 977
AoxI GGCC 2 cut(s) 677, 760
ApeKI GCWGC 8 cut(s) 290, 449, 644, 725, 977, 980, 986, 989
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 2 cut(s) 597, 1104
AspS9I GGNCC 1 cut(s) 677
AsuHPI GGTGA 3 cut(s) 6, 469, 1070
AsuNHI GCTAGC 1 cut(s) 934
BamHI GGATCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 135
BanII GRGCYC 2 cut(s) 109, 192
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 398, 1015
Bbv12I GWGCWC 3 cut(s) 109, 192, 239
BbvI GCAGC 8 cut(s) 302, 436, 631, 712, 964, 967, 973, 976
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 149, 747
BciT130I CCWGG 2 cut(s) 387, 846
BciVI GTATCC 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 146
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 414, 935
BfmI CTRYAG 2 cut(s) 343, 813
BfuAI ACCTGC 1 cut(s) 820
BfuI GTATCC 1 cut(s) 688
Bme1390I CCNGG 2 cut(s) 387, 846
BmgT120I GGNCC 1 cut(s) 677
BmiI GGNNCC 4 cut(s) 137, 312, 552, 810
BmrFI CCNGG 2 cut(s) 387, 846
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 1104
BmtI GCTAGC 1 cut(s) 938
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 2 cut(s) 398, 1015
BplI GAGNNNNNCTC 6 cut(s) 96, 128, 108, 140, 174, 206
BpmI CTGGAG 1 cut(s) 855
BsaHI GRCGYC 2 cut(s) 216, 488
BsaJI CCNNGG 3 cut(s) 210, 243, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 560, 1055
Bse118I RCCGGY 2 cut(s) 86, 484
Bse1I ACTGG 3 cut(s) 679, 742, 763
BseBI CCWGG 2 cut(s) 387, 846
BseDI CCNNGG 3 cut(s) 210, 243, 386
BseLI CCNNNNNNNGG 3 cut(s) 416, 560, 1055
BseMII CTCAG 2 cut(s) 354, 1005
BseNI ACTGG 3 cut(s) 679, 742, 763
BseRI GAGGAG 3 cut(s) 9, 154, 835
BseXI GCAGC 8 cut(s) 302, 436, 631, 712, 964, 967, 973, 976
BseYI CCCAGC 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 679, 762
BshNI GGYRCC 1 cut(s) 135
BsiHKAI GWGCWC 3 cut(s) 109, 192, 239
BsiSI CCGG 2 cut(s) 87, 485
BslI CCNNNNNNNGG 3 cut(s) 416, 560, 1055
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsmI GAATGC 2 cut(s) 524, 655
BsnI GGCC 2 cut(s) 679, 762
Bsp1286I GDGCHC 3 cut(s) 109, 192, 239
Bsp143I GATC 3 cut(s) 228, 550, 657
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 5 cut(s) 32, 159, 983, 1037, 1117
BspANI GGCC 2 cut(s) 679, 762
BspCNI CTCAG 2 cut(s) 355, 1006
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 4 cut(s) 137, 312, 552, 810
BspMAI CTGCAG 1 cut(s) 817
BspMI ACCTGC 1 cut(s) 820
BspOI GCTAGC 1 cut(s) 938
BspPI GGATC 3 cut(s) 545, 558, 652
BspQI GCTCTTC 2 cut(s) 114, 180
BspT107I GGYRCC 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 86, 484
BsrI ACTGG 3 cut(s) 679, 742, 763
BssAI RCCGGY 2 cut(s) 86, 484
BssECI CCNNGG 3 cut(s) 210, 243, 386
BssMI GATC 3 cut(s) 228, 550, 657
BssNAI GTATAC 1 cut(s) 250
BssNI GRCGYC 2 cut(s) 216, 488
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 387, 846
Bst4CI ACNGT 7 cut(s) 65, 140, 315, 397, 633, 748, 1078
Bst6I CTCTTC 3 cut(s) 114, 180, 1095
BstACI GRCGYC 2 cut(s) 216, 488
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 6 cut(s) 84, 88, 126, 486, 936, 953
BstDEI CTNAG 2 cut(s) 363, 1014
BstDSI CCRYGG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 898
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 3 cut(s) 231, 553, 660
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 228, 550, 657
BstMWI GCNNNNNNNGC 9 cut(s) 31, 158, 287, 446, 530, 650, 983, 986, 989
BstNI CCWGG 2 cut(s) 387, 846
BstPI GGTNACC 1 cut(s) 898
BstSCI CCNGG 2 cut(s) 385, 844
BstSFI CTRYAG 2 cut(s) 343, 813
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 8 cut(s) 302, 436, 631, 712, 964, 967, 973, 976
BstV2I GAAGAC 2 cut(s) 398, 1015
BstX2I RGATCY 2 cut(s) 550, 657
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 2 cut(s) 550, 657
BstZ17I GTATAC 1 cut(s) 250
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 2 cut(s) 679, 762
BtgI CCRYGG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 756, 1074
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 6 cut(s) 84, 88, 126, 486, 936, 953
CaiI CAGNNNCTG 2 cut(s) 758, 977
Cfr10I RCCGGY 2 cut(s) 86, 484
Cfr13I GGNCC 1 cut(s) 677
CseI GACGC 3 cut(s) 60, 203, 477
Csp6I GTAC 3 cut(s) 119, 744, 1079
CviAII CATG 3 cut(s) 244, 349, 481
CviQI GTAC 3 cut(s) 119, 744, 1079
DdeI CTNAG 2 cut(s) 363, 1014
DpnI GATC 3 cut(s) 230, 552, 659
DpnII GATC 3 cut(s) 228, 550, 657
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 3 cut(s) 114, 180, 1095
EarI CTCTTC 3 cut(s) 114, 180, 1095
Ecl136II GAGCTC 2 cut(s) 107, 190
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 2 cut(s) 109, 192
Eco32I GATATC 1 cut(s) 354
Eco53kI GAGCTC 2 cut(s) 107, 190
Eco91I GGTNACC 1 cut(s) 898
EcoICRI GAGCTC 2 cut(s) 107, 190
EcoO65I GGTNACC 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 385, 844
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 109, 192
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 3 cut(s) 247, 352, 484
FatI CATG 3 cut(s) 243, 348, 480
FauI CCCGC 1 cut(s) 1110
FblI GTMKAC 2 cut(s) 171, 249
FriOI GRGCYC 2 cut(s) 109, 192
FspBI CTAG 2 cut(s) 414, 935
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 2 cut(s) 679, 762
HapII CCGG 2 cut(s) 87, 485
HgaI GACGC 3 cut(s) 60, 203, 477
Hin1I GRCGYC 2 cut(s) 216, 488
Hin1II CATG 3 cut(s) 247, 352, 484
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 2 cut(s) 296, 1051
HinfI GANTC 2 cut(s) 302, 511
HpaII CCGG 2 cut(s) 87, 485
HphI GGTGA 3 cut(s) 6, 469, 1070
Hpy166II GTNNAC 3 cut(s) 172, 250, 712
Hpy188I TCNGA 3 cut(s) 116, 182, 1110
Hpy188III TCNNGA 3 cut(s) 232, 554, 834
Hpy8I GTNNAC 3 cut(s) 172, 250, 712
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 85, 263, 501, 941
HpyCH4III ACNGT 7 cut(s) 65, 140, 315, 397, 633, 748, 1078
HpyCH4IV ACGT 2 cut(s) 216, 870
HpyCH4V TGCA 5 cut(s) 290, 452, 653, 815, 992
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 158, 287, 446, 530, 650, 983, 986, 989
HpyF3I CTNAG 2 cut(s) 363, 1014
HpySE526I ACGT 2 cut(s) 216, 870
Hsp92I GRCGYC 2 cut(s) 216, 488
Hsp92II CATG 3 cut(s) 247, 352, 484
KroI GCCGGC 2 cut(s) 86, 484
KroNI GCCGGC 2 cut(s) 88, 486
Kzo9I GATC 3 cut(s) 228, 550, 657
LguI GCTCTTC 2 cut(s) 114, 180
LmnI GCTCC 3 cut(s) 104, 234, 572
Lsp1109I GCAGC 8 cut(s) 302, 436, 631, 712, 964, 967, 973, 976
LweI GCATC 1 cut(s) 1104
MaeI CTAG 2 cut(s) 414, 935
MaeII ACGT 2 cut(s) 216, 870
MaeIII GTNAC 5 cut(s) 217, 475, 748, 764, 898
MalI GATC 3 cut(s) 230, 552, 659
MboI GATC 3 cut(s) 228, 550, 657
MboII GAAGA 7 cut(s) 20, 101, 197, 403, 1020, 1112, 1123
MflI RGATCY 2 cut(s) 550, 657
MhlI GDGCHC 3 cut(s) 109, 192, 239
MluCI AATT 6 cut(s) 91, 336, 594, 613, 874, 1092
MroNI GCCGGC 2 cut(s) 86, 484
MroXI GAANNNNTTC 2 cut(s) 597, 1104
MseI TTAA 2 cut(s) 603, 873
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 2 cut(s) 87, 485
MspR9I CCNGG 2 cut(s) 387, 846
Mva1269I GAATGC 2 cut(s) 524, 655
MvaI CCWGG 2 cut(s) 387, 846
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 9 cut(s) 31, 158, 287, 446, 530, 650, 983, 986, 989
NaeI GCCGGC 2 cut(s) 88, 486
NcoI CCATGG 1 cut(s) 243
NdeII GATC 3 cut(s) 228, 550, 657
NgoMIV GCCGGC 2 cut(s) 86, 484
NheI GCTAGC 1 cut(s) 934
NlaIII CATG 3 cut(s) 247, 352, 484
NlaIV GGNNCC 4 cut(s) 137, 312, 552, 810
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 217, 475
PciSI GCTCTTC 2 cut(s) 114, 180
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 2 cut(s) 524, 655
PdiI GCCGGC 2 cut(s) 88, 486
PdmI GAANNNNTTC 2 cut(s) 597, 1104
PfeI GAWTC 2 cut(s) 302, 511
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 2 cut(s) 416, 1055
Psp124BI GAGCTC 2 cut(s) 109, 192
Psp6I CCWGG 2 cut(s) 385, 844
PspEI GGTNACC 1 cut(s) 898
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 385, 844
PspN4I GGNNCC 4 cut(s) 137, 312, 552, 810
PspPI GGNCC 1 cut(s) 677
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 758, 977
PsuI RGATCY 2 cut(s) 550, 657
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 3 cut(s) 120, 745, 1080
RsaNI GTAC 3 cut(s) 119, 744, 1079
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 2 cut(s) 109, 192
SapI GCTCTTC 2 cut(s) 114, 180
SaqAI TTAA 2 cut(s) 603, 873
Sau3AI GATC 3 cut(s) 228, 550, 657
Sau96I GGNCC 1 cut(s) 677
ScrFI CCNGG 2 cut(s) 387, 846
SduI GDGCHC 3 cut(s) 109, 192, 239
SfaNI GCATC 1 cut(s) 1104
SfcI CTRYAG 2 cut(s) 343, 813
SmiMI CAYNNNNRTG 1 cut(s) 242
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 6 cut(s) 91, 336, 594, 613, 874, 1092
SsiI CCGC 5 cut(s) 32, 159, 983, 1037, 1117
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 414, 935
SstI GAGCTC 2 cut(s) 109, 192
StyD4I CCNGG 2 cut(s) 385, 844
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 7 cut(s) 65, 140, 315, 397, 633, 748, 1078
TaiI ACGT 2 cut(s) 219, 873
TaqI TCGA 1 cut(s) 192
TasI AATT 6 cut(s) 91, 336, 594, 613, 874, 1092
TatI WGTACW 2 cut(s) 118, 1078
TauI GCSGC 2 cut(s) 161, 986
TfiI GAWTC 2 cut(s) 302, 511
Tru1I TTAA 2 cut(s) 603, 873
Tru9I TTAA 2 cut(s) 603, 873
TscAI CASTG 2 cut(s) 763, 1081
TseFI GTSAC 2 cut(s) 217, 475
TseI GCWGC 8 cut(s) 290, 449, 644, 725, 977, 980, 986, 989
Tsp45I GTSAC 2 cut(s) 217, 475
TspDTI ATGAA 3 cut(s) 606, 794, 924
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 2 cut(s) 763, 1081
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 2 cut(s) 416, 1055
XapI RAATTY 1 cut(s) 613
XmiI GTMKAC 2 cut(s) 171, 249
XmnI GAANNNNTTC 2 cut(s) 597, 1104
XspI CTAG 2 cut(s) 414, 935
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.