Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003261

Physical Location & Seq

Genomic Coordinates Reverse (-)

27305781 .. 27306879

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0276200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAAGAGTACGAGTTGTGTGCCACTGATCTCTTGGTGTTGTGCACCTTGAAGAAGAACCCAAGAAAAGCACGACCATCAACATCAACAGCTACTACTAGTAGTGCTCAGACCAATGGTAAGAAGAGGAAGAGGATTGTTGATAATCAACCGAGAAAAACCGAGGCAGTGAGATCAGAAAAGGCTGAGACTTGTGAGGAACAACAATCCACCATCTGTGTCGATCTTACAAATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGCTGCTGCAAGTTGTTGATGAAGATTATCATCCTGAGCTCTATCCTGAGTTACATCCTGATCTCGTTCAAAGCAACGAGCCTCTGTTTTTTATGGAGGAACTTCTTGCACCAAGTCCTCTGGATGTTCAGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCATGATCAATCATACGTCAGCGCTAATGATCAATTTCAGGATCATTCGTATGAAGACAATAGCTTCATGAGTTTCCTATCCACTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAGTTCTTGGACTGCAACGACTTAACATGCCTTATATTGAGTATACGGTTGCAGAGCCATACCAAAAAAGAAAAGAACATAGGGATTGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATTCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTCGGGACAAGAACGGTGGTTCCAGCGCGGATGATGGAGAGCGTATCTTTTTCTTCACCAAACGCAAGAAATTGAACCCCCTCCCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009987 GO:0010310 GO:0015979 GO:0016053 GO:0016740 GO:0016765 GO:0019222 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0031323 GO:0031977 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0065007 GO:0070279 GO:0071704 GO:0090322 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

274

Amino Acids

31.45

Weight (kDa)

4.67

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03630
fragaria_vesca	FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730
malus_domestica	MD12G1013800.v1.1 MD14G1011300.v1.1
prunus_persica	Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1
pyrus_communis	pycom12g01140 pycom14g01000
rosa_chinensis	RchiOBHm_Chr3g0495741
rosa_laevigata	RLG00000022591
rosa_multiflora	Rmu_sc0020877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390070
rosa_rugosa	Rorug03G0276000 Rorug03G0276100 Rorug03G0276200 Rorug03G0276300
rosa_samantha	Rh3BG359000 Rh3DG358900
rosa_wichuraiana	Rw3G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	619
AccII	CGCG	1 cut(s)	761
AciI	CCGC	1 cut(s)	761
AclWI	GGATC	3 cut(s)	395, 408, 486
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	541
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	52, 338, 530, 808
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	725
AloI	GAACNNNNNNTCC	2 cut(s)	737, 769
AluBI	AGCT	5 cut(s)	92, 271, 307, 501, 561
AluI	AGCT	5 cut(s)	92, 271, 307, 501, 561
Alw21I	GWGCWC	3 cut(s)	47, 109, 309
Alw26I	GTCTC	4 cut(s)	182, 236, 435, 441
Alw44I	GTGCAC	1 cut(s)	43
AlwI	GGATC	3 cut(s)	395, 408, 486
AlwNI	CAGNNNCTG	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	460
AoxI	GGCC	1 cut(s)	712
ApaLI	GTGCAC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	271, 274
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	461, 761
AsuHPI	GGTGA	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	498, 552
Bbv12I	GWGCWC	3 cut(s)	47, 109, 309
BbvI	GCAGC	2 cut(s)	258, 261
BccI	CCATC	3 cut(s)	85, 221, 761
BceAI	ACGGC	1 cut(s)	727
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	727
BciVI	GTATCC	1 cut(s)	577
BclI	TGATCA	3 cut(s)	442, 466, 574
BcoDI	GTCTC	4 cut(s)	182, 236, 435, 441
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	687
BisI	GCNGC	2 cut(s)	272, 275
BlsI	GCNGC	2 cut(s)	273, 276
Bme1390I	CCNGG	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	402, 754
BmrFI	CCNGG	1 cut(s)	727
BpiI	GAAGAC	2 cut(s)	498, 552
Bpu10I	CCTNAGC	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	162, 725, 726
Bse1I	ACTGG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	3 cut(s)	162, 725, 726
BseGI	GGATG	4 cut(s)	298, 322, 397, 769
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	5 cut(s)	122, 177, 294, 306, 446
BseNI	ACTGG	1 cut(s)	570
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	258, 261
Bsh1236I	CGCG	1 cut(s)	761
BshFI	GGCC	1 cut(s)	714
BsiHKAI	GWGCWC	3 cut(s)	47, 109, 309
BslFI	GGGAC	1 cut(s)	752
BsmAI	GTCTC	4 cut(s)	182, 236, 435, 441
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	1 cut(s)	714
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	3 cut(s)	47, 109, 309
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	1 cut(s)	714
BspCNI	CTCAG	5 cut(s)	121, 178, 295, 307, 445
BspFNI	CGCG	1 cut(s)	761
BspHI	TCATGA	2 cut(s)	439, 504
BspLI	GGNNCC	2 cut(s)	402, 754
BspPI	GGATC	3 cut(s)	395, 408, 486
BspTNI	GGTCTC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	3 cut(s)	162, 725, 726
BssNAI	GTATAC	1 cut(s)	620
Bst1107I	GTATAC	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	3 cut(s)	537, 624, 749
Bst6I	CTCTTC	4 cut(s)	119, 125, 234, 411
BstDEI	CTNAG	5 cut(s)	108, 186, 303, 315, 432
BstF5I	GGATG	4 cut(s)	298, 322, 397, 769
BstFNI	CGCG	1 cut(s)	761
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	461, 761
BstMAI	GTCTC	4 cut(s)	182, 236, 435, 441
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	725
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	761
BstV1I	GCAGC	2 cut(s)	258, 261
BstV2I	GAAGAC	2 cut(s)	498, 552
BstX2I	RGATCY	2 cut(s)	400, 687
BstYI	RGATCY	2 cut(s)	400, 687
BstZ17I	GTATAC	1 cut(s)	620
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	714
BtsCI	GGATG	4 cut(s)	298, 322, 397, 769
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	4 cut(s)	24, 174, 519, 577
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	2 cut(s)	439, 504
CfoI	GCGC	2 cut(s)	461, 761
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	730, 765
CviAII	CATG	3 cut(s)	440, 505, 603
CviJI	RGCY	9 cut(s)	92, 185, 271, 307, 349, 501, 561, 633, 714
CviKI_1	RGCY	9 cut(s)	92, 185, 271, 307, 349, 501, 561, 633, 714
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	5 cut(s)	108, 186, 303, 315, 432
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	4 cut(s)	119, 125, 234, 411
EarI	CTCTTC	4 cut(s)	119, 125, 234, 411
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	236
Eco47III	AGCGCT	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	3 cut(s)	443, 508, 606
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	3 cut(s)	439, 504, 602
FbaI	TGATCA	3 cut(s)	442, 466, 574
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	2 cut(s)	272, 275
FokI	GGATG	4 cut(s)	285, 309, 404, 776
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	272, 275
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	2 cut(s)	460, 760
GluI	GCNGC	2 cut(s)	272, 275
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	714
HhaI	GCGC	2 cut(s)	461, 761
Hin1II	CATG	3 cut(s)	443, 508, 606
Hin6I	GCGC	2 cut(s)	459, 759
HinP1I	GCGC	2 cut(s)	459, 759
HinfI	GANTC	3 cut(s)	256, 419, 428
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	2 cut(s)	45, 620
Hpy188I	TCNGA	5 cut(s)	111, 178, 253, 694, 703
Hpy8I	GTNNAC	2 cut(s)	45, 620
HpyCH4III	ACNGT	3 cut(s)	537, 624, 749
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	4, 45, 277, 377, 591, 628
HpyF3I	CTNAG	5 cut(s)	108, 186, 303, 315, 432
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	443, 508, 606
HspAI	GCGC	2 cut(s)	459, 759
Ksp22I	TGATCA	3 cut(s)	442, 466, 574
Lsp1109I	GCAGC	2 cut(s)	258, 261
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	318
MflI	RGATCY	2 cut(s)	400, 687
MhlI	GDGCHC	3 cut(s)	47, 109, 309
MluCI	AATT	4 cut(s)	247, 470, 524, 803
MlyI	GAGTC	3 cut(s)	265, 428, 437
MnlI	CCTC	9 cut(s)	120, 126, 157, 190, 358, 360, 396, 414, 824
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	2 cut(s)	486, 681
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	1 cut(s)	761
NlaIII	CATG	3 cut(s)	443, 508, 606
NlaIV	GGNNCC	2 cut(s)	402, 754
NspI	RCATGY	1 cut(s)	606
PagI	TCATGA	2 cut(s)	439, 504
PasI	CCCWGGG	1 cut(s)	726
PkrI	GCNGC	2 cut(s)	273, 276
PleI	GAGTC	3 cut(s)	264, 427, 436
PpsI	GAGTC	3 cut(s)	264, 427, 436
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	2 cut(s)	402, 754
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	400, 687
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	486, 681
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	2 cut(s)	272, 275
SchI	GAGTC	3 cut(s)	265, 428, 437
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	3 cut(s)	47, 109, 309
SetI	ASST	7 cut(s)	50, 94, 273, 309, 456, 503, 563
SmiMI	CAYNNNNRTG	2 cut(s)	486, 681
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	4 cut(s)	247, 470, 524, 803
SsiI	CCGC	1 cut(s)	761
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	725
TaaI	ACNGT	3 cut(s)	537, 624, 749
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	4 cut(s)	222, 259, 422, 680
TasI	AATT	4 cut(s)	247, 470, 524, 803
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	4 cut(s)	31, 174, 526, 577
TseI	GCWGC	2 cut(s)	271, 274
TspDTI	ATGAA	3 cut(s)	303, 493, 504
TspRI	CASTG	4 cut(s)	31, 174, 526, 577
VneI	GTGCAC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	619
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.