pycom12g01140

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
963882 .. 968773
4892 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01140.3

Sequence Viewer

Length: 1134 bp
ATGGCTATATTATCACCTGCTCTGCTTCTTCATCTTCCCCTTCCTCTCTCATCTCTCCCCAAACCCCACGGTTTCGCGTCCTTCAAGCTCGCCGGCAATTCCACCGATGGAGCTCTTCTCGGAGTACAGCTCGCAAAACGGCACCGTCTCGTGTTTGCCAAAGCCGCCTCCTCTGTCTACGCCATCAGAGAAGATCTCGACACTGTCAATATCGCCGAGGACGTCACGCAGTTGATCGGGAGCACACCCATGGTATACCTCAACAAAGTTAGCGAAGGTTGTGTGGCAAATATTGCAGCAAAGCTTGAATCTATGGAACCGTGCCGAAGTGTCAAGGATAGAATTGGCTGTAGCATGATAACTAATGCTGAGAAAAGTGGGTTAATATCTCCTGGGAAGACTGTATTAGTTGAACCAACTAGTGGAAATACAGGACTTGGTATTGCTTTTGTTGCTGCAACTAAAGGGTATAAACTTATAGTCACCATGCCGGCGTCCATAAATATTGAAAGGAGGATTCTTTTACGGGCATTTGGGGCAGAGGTTGTTTTGACGGATCCAGAAAAGGGTTTGAAAGGAGCGTTAGATAAAGCTGGGGAAATTGTTCTCAGCACACCAAATTCATATATGCTTCAACAGTTTGATAATGCTGCGAATGCAGAGATCCATTTCGATACTACTGGGCCAGAAATATGGGAGGATACCATTGGTAATGTTGACATATTTGTTGCTGCTATTGGAACTGGTGGTACTGTTACAGGCACTGGCCGTTACCTGAAAATGATGAACAAGGAGATAAAGGTAGTAGGTGTGGAACCTGCAGAGAGGAGTGTAATATCCGGAGAAAATCCAGGTTATGTACCAAGCATTTTGGACGTTAATTTACTTGATGAGGTCATCAAGGTTACCAACGATGAAGCTGTTGAAATGGCAAGGAGGCTAGCATTGGAGGAAGGCTTACTGGTTGGTATCTCATCAGGTGCTGCTGCGGCTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAACACTGGAAAACTTATTGCGGTTGTATTTCCAAGCTTTGGTGAGAGGTATATTCCCACTGTACTTTTCCAATCAATTTACGAAGAGGTTCAGAAGATGCGGGGAAAGTAA

Protein Analysis

378

Amino Acids

40.09

Weight (kDa)

5.76

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 2 cut(s) 25, 826
AccB1I GGYRCC 1 cut(s) 141
AccB7I CCANNNNNTGG 2 cut(s) 422, 1061
AccI GTMKAC 2 cut(s) 177, 255
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 839
AciI CCGC 4 cut(s) 165, 989, 1043, 1123
AclWI GGATC 3 cut(s) 551, 564, 658
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 1 cut(s) 619
AcyI GRCGYC 2 cut(s) 222, 494
AfaI GTAC 4 cut(s) 126, 751, 861, 1086
AfiI CCNNNNNNNGG 3 cut(s) 422, 566, 1061
AgsI TTSAA 7 cut(s) 85, 308, 413, 509, 574, 635, 926
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 2 cut(s) 391, 850
AluBI AGCT 7 cut(s) 88, 113, 130, 304, 593, 920, 1059
AluI AGCT 7 cut(s) 88, 113, 130, 304, 593, 920, 1059
Alw21I GWGCWC 2 cut(s) 115, 245
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 551, 564, 658
AlwNI CAGNNNCTG 2 cut(s) 764, 983
Aor13HI TCCGGA 1 cut(s) 839
AoxI GGCC 2 cut(s) 683, 766
ApeKI GCWGC 8 cut(s) 296, 455, 650, 731, 983, 986, 992, 995
ApoI RAATTY 1 cut(s) 619
Asp700I GAANNNNTTC 2 cut(s) 603, 1110
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 3 cut(s) 6, 475, 1076
AsuNHI GCTAGC 1 cut(s) 940
BamHI GGATCC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 115
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 404, 1021
Bbv12I GWGCWC 2 cut(s) 115, 245
BbvI GCAGC 8 cut(s) 308, 442, 637, 718, 970, 973, 979, 982
BccI CCATC 2 cut(s) 101, 191
BceAI ACGGC 2 cut(s) 155, 753
BciT130I CCWGG 2 cut(s) 393, 852
BciVI GTATCC 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 2 cut(s) 420, 941
BfmI CTRYAG 2 cut(s) 349, 819
BfuAI ACCTGC 2 cut(s) 25, 826
BfuI GTATCC 1 cut(s) 694
BglII AGATCT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 393, 852
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 4 cut(s) 143, 318, 558, 816
BmrFI CCNGG 2 cut(s) 393, 852
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 1 cut(s) 1110
BmtI GCTAGC 1 cut(s) 944
BmuI ACTGGG 1 cut(s) 690
BpiI GAAGAC 2 cut(s) 404, 1021
BplI GAGNNNNNCTC 6 cut(s) 102, 134, 114, 146, 180, 212
BsaHI GRCGYC 2 cut(s) 222, 494
BsaJI CCNNGG 4 cut(s) 67, 216, 249, 392
BsaWI WCCGGW 1 cut(s) 839
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 566, 1061
Bse118I RCCGGY 2 cut(s) 92, 490
Bse1I ACTGG 5 cut(s) 685, 748, 769, 966, 1033
BseAI TCCGGA 1 cut(s) 839
BseBI CCWGG 2 cut(s) 393, 852
BseDI CCNNGG 4 cut(s) 67, 216, 249, 392
BseLI CCNNNNNNNGG 3 cut(s) 422, 566, 1061
BseMII CTCAG 3 cut(s) 360, 622, 1011
BseNI ACTGG 5 cut(s) 685, 748, 769, 966, 1033
BseRI GAGGAG 2 cut(s) 160, 841
BseXI GCAGC 8 cut(s) 308, 442, 637, 718, 970, 973, 979, 982
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 685, 768
BshNI GGYRCC 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 115, 245
BsiSI CCGG 3 cut(s) 93, 491, 840
BslI CCNNNNNNNGG 3 cut(s) 422, 566, 1061
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 685, 768
Bsp1286I GDGCHC 2 cut(s) 115, 245
Bsp13I TCCGGA 1 cut(s) 839
Bsp143I GATC 4 cut(s) 193, 234, 556, 663
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 4 cut(s) 165, 989, 1043, 1123
BspANI GGCC 2 cut(s) 685, 768
BspCNI CTCAG 3 cut(s) 361, 621, 1012
BspEI TCCGGA 1 cut(s) 839
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 4 cut(s) 143, 318, 558, 816
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 2 cut(s) 25, 826
BspOI GCTAGC 1 cut(s) 944
BspPI GGATC 3 cut(s) 551, 564, 658
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 141
BsrFI RCCGGY 2 cut(s) 92, 490
BsrI ACTGG 5 cut(s) 685, 748, 769, 966, 1033
BssAI RCCGGY 2 cut(s) 92, 490
BssECI CCNNGG 4 cut(s) 67, 216, 249, 392
BssMI GATC 4 cut(s) 193, 234, 556, 663
BssNAI GTATAC 1 cut(s) 256
BssNI GRCGYC 2 cut(s) 222, 494
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 393, 852
Bst4CI ACNGT 8 cut(s) 71, 146, 205, 321, 403, 639, 754, 1084
Bst6I CTCTTC 2 cut(s) 120, 1101
BstACI GRCGYC 2 cut(s) 222, 494
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 5 cut(s) 90, 94, 132, 492, 942
BstDEI CTNAG 3 cut(s) 369, 608, 1020
BstDSI CCRYGG 2 cut(s) 67, 249
BstEII GGTNACC 1 cut(s) 904
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 4 cut(s) 196, 237, 559, 666
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 193, 234, 556, 663
BstMWI GCNNNNNNNGC 8 cut(s) 164, 293, 452, 536, 656, 989, 992, 995
BstNI CCWGG 2 cut(s) 393, 852
BstPI GGTNACC 1 cut(s) 904
BstSCI CCNGG 2 cut(s) 391, 850
BstSFI CTRYAG 2 cut(s) 349, 819
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 8 cut(s) 308, 442, 637, 718, 970, 973, 979, 982
BstV2I GAAGAC 2 cut(s) 404, 1021
BstX2I RGATCY 3 cut(s) 193, 556, 663
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 3 cut(s) 193, 556, 663
BstZ17I GTATAC 1 cut(s) 256
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 2 cut(s) 685, 768
BtgI CCRYGG 2 cut(s) 67, 249
BtsIMutI CAGTG 4 cut(s) 201, 762, 1026, 1080
BveI ACCTGC 2 cut(s) 25, 826
Cac8I GCNNGC 5 cut(s) 90, 94, 132, 492, 942
CaiI CAGNNNCTG 2 cut(s) 764, 983
Cfr10I RCCGGY 2 cut(s) 92, 490
Cfr13I GGNCC 1 cut(s) 683
CseI GACGC 2 cut(s) 66, 483
Csp6I GTAC 4 cut(s) 125, 750, 860, 1085
CviAII CATG 3 cut(s) 250, 355, 487
CviQI GTAC 4 cut(s) 125, 750, 860, 1085
DdeI CTNAG 3 cut(s) 369, 608, 1020
DpnI GATC 4 cut(s) 195, 236, 558, 665
DpnII GATC 4 cut(s) 193, 234, 556, 663
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 2 cut(s) 120, 1101
EarI CTCTTC 2 cut(s) 120, 1101
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 904
EcoICRI GAGCTC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 904
EcoRII CCWGG 2 cut(s) 391, 850
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 3 cut(s) 253, 358, 490
FatI CATG 3 cut(s) 249, 354, 486
FauI CCCGC 1 cut(s) 1116
FblI GTMKAC 2 cut(s) 177, 255
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 2 cut(s) 420, 941
GsaI CCCAGC 1 cut(s) 597
HaeIII GGCC 2 cut(s) 685, 768
HapII CCGG 3 cut(s) 93, 491, 840
HgaI GACGC 2 cut(s) 66, 483
Hin1I GRCGYC 2 cut(s) 222, 494
Hin1II CATG 3 cut(s) 253, 358, 490
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 2 cut(s) 302, 1057
HinfI GANTC 2 cut(s) 308, 517
HpaII CCGG 3 cut(s) 93, 491, 840
HphI GGTGA 3 cut(s) 6, 475, 1076
Hpy166II GTNNAC 3 cut(s) 178, 256, 718
Hpy188I TCNGA 3 cut(s) 122, 188, 1116
Hpy188III TCNNGA 4 cut(s) 197, 238, 560, 840
Hpy8I GTNNAC 3 cut(s) 178, 256, 718
HpyAV CCTTC 4 cut(s) 50, 91, 269, 947
HpyCH4III ACNGT 8 cut(s) 71, 146, 205, 321, 403, 639, 754, 1084
HpyCH4IV ACGT 2 cut(s) 222, 876
HpyCH4V TGCA 5 cut(s) 296, 458, 659, 821, 998
HpyF10VI GCNNNNNNNGC 8 cut(s) 164, 293, 452, 536, 656, 989, 992, 995
HpyF3I CTNAG 3 cut(s) 369, 608, 1020
HpySE526I ACGT 2 cut(s) 222, 876
Hsp92I GRCGYC 2 cut(s) 222, 494
Hsp92II CATG 3 cut(s) 253, 358, 490
Kpn2I TCCGGA 1 cut(s) 839
KroI GCCGGC 2 cut(s) 92, 490
KroNI GCCGGC 2 cut(s) 94, 492
Kzo9I GATC 4 cut(s) 193, 234, 556, 663
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 110, 240, 578
Lsp1109I GCAGC 8 cut(s) 308, 442, 637, 718, 970, 973, 979, 982
LweI GCATC 1 cut(s) 1110
MaeI CTAG 2 cut(s) 420, 941
MaeII ACGT 2 cut(s) 222, 876
MaeIII GTNAC 5 cut(s) 223, 481, 754, 770, 904
MalI GATC 4 cut(s) 195, 236, 558, 665
MboI GATC 4 cut(s) 193, 234, 556, 663
MboII GAAGA 8 cut(s) 20, 26, 107, 203, 409, 1026, 1118, 1129
MflI RGATCY 3 cut(s) 193, 556, 663
MhlI GDGCHC 2 cut(s) 115, 245
MluCI AATT 6 cut(s) 97, 342, 600, 619, 880, 1098
MroI TCCGGA 1 cut(s) 839
MroNI GCCGGC 2 cut(s) 92, 490
MroXI GAANNNNTTC 2 cut(s) 603, 1110
MseI TTAA 2 cut(s) 383, 879
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 3 cut(s) 93, 491, 840
MspR9I CCNGG 2 cut(s) 393, 852
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 2 cut(s) 393, 852
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 8 cut(s) 164, 293, 452, 536, 656, 989, 992, 995
NaeI GCCGGC 2 cut(s) 94, 492
NcoI CCATGG 1 cut(s) 249
NdeII GATC 4 cut(s) 193, 234, 556, 663
NgoMIV GCCGGC 2 cut(s) 92, 490
NheI GCTAGC 1 cut(s) 940
NlaIII CATG 3 cut(s) 253, 358, 490
NlaIV GGNNCC 4 cut(s) 143, 318, 558, 816
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 223, 481
PaqCI CACCTGC 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 661
PdiI GCCGGC 2 cut(s) 94, 492
PdmI GAANNNNTTC 2 cut(s) 603, 1110
PfeI GAWTC 2 cut(s) 308, 517
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 2 cut(s) 422, 1061
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 391, 850
PspEI GGTNACC 1 cut(s) 904
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 391, 850
PspN4I GGNNCC 4 cut(s) 143, 318, 558, 816
PspPI GGNCC 1 cut(s) 683
PsrI GAACNNNNNNTAC 2 cut(s) 733, 765
PstI CTGCAG 1 cut(s) 823
PstNI CAGNNNCTG 2 cut(s) 764, 983
PsuI RGATCY 3 cut(s) 193, 556, 663
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 4 cut(s) 126, 751, 861, 1086
RsaNI GTAC 4 cut(s) 125, 750, 860, 1085
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 383, 879
Sau3AI GATC 4 cut(s) 193, 234, 556, 663
Sau96I GGNCC 1 cut(s) 683
ScrFI CCNGG 2 cut(s) 393, 852
SduI GDGCHC 2 cut(s) 115, 245
SfaNI GCATC 1 cut(s) 1110
SfcI CTRYAG 2 cut(s) 349, 819
SmiMI CAYNNNNRTG 1 cut(s) 248
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 6 cut(s) 97, 342, 600, 619, 880, 1098
SsiI CCGC 4 cut(s) 165, 989, 1043, 1123
SspI AATATT 2 cut(s) 292, 505
SspMI CTAG 2 cut(s) 420, 941
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 391, 850
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 8 cut(s) 71, 146, 205, 321, 403, 639, 754, 1084
TaiI ACGT 2 cut(s) 225, 879
TaqI TCGA 2 cut(s) 198, 672
TasI AATT 6 cut(s) 97, 342, 600, 619, 880, 1098
TatI WGTACW 2 cut(s) 124, 1084
TauI GCSGC 2 cut(s) 167, 992
TfiI GAWTC 2 cut(s) 308, 517
Tru1I TTAA 2 cut(s) 383, 879
Tru9I TTAA 2 cut(s) 383, 879
TscAI CASTG 4 cut(s) 208, 769, 1033, 1087
TseFI GTSAC 2 cut(s) 223, 481
TseI GCWGC 8 cut(s) 296, 455, 650, 731, 983, 986, 992, 995
Tsp45I GTSAC 2 cut(s) 223, 481
TspDTI ATGAA 4 cut(s) 20, 612, 800, 930
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 4 cut(s) 208, 769, 1033, 1087
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 2 cut(s) 422, 1061
XapI RAATTY 1 cut(s) 619
XmiI GTMKAC 2 cut(s) 177, 255
XmnI GAANNNNTTC 2 cut(s) 603, 1110
XspI CTAG 2 cut(s) 420, 941
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.