Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020877.1

Orthogroup ID

OG0003261

Physical Location & Seq

Genomic Coordinates Reverse (-)

1352 .. 5633

Gene Structure 4282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020877.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgcagaatgtattggttgaaccaactagtggaaatacagggctgggaattgcttttgttgctgctaccaaagggtataaactcatagtgaccatgcctgcatccataaatcttgaaagaaggattctgttacgggcatttggagcggaggttgttttgacagatccagagaagggtttgaaaggggctttagataaagctgaacaaattgttctcagcacgccaaattcatttatgcttcaacagtttgataattctgcaaatgcaaagatccattttgatactaccgggccagagatatgggaggataccatgggaagtgttgacatttttgttgctgctattggaactggtggtactgttacaggcactgggcgttacctgaaagcgatgaacaaagagataaaggtagtaggtgtagaaccagcagagcggagtgtgatctctggagaaaatccaggttacgtgccaagcatattggacgttaatctgcttgatgaagtcatcaaggttacgaatgatgaagctgttgaaatggccaggagattagcattgaaggaaggtttgctggttggtatttcatcaggagctgctgcagctgctgcaataagtttagcaagaagacctgagaacgctggaaagcttattgcggttgtatttcctagctttggtgagaggtatattccaactgtactcttccaatccatatatgaagatgttcagaagatgcgaggaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009987 GO:0010310 GO:0015979 GO:0016053 GO:0016740 GO:0016765 GO:0019222 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0031323 GO:0031977 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0065007 GO:0070279 GO:0071704 GO:0090322 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

246

Amino Acids

26.25

Weight (kDa)

5.24

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03630
fragaria_vesca	FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730
malus_domestica	MD12G1013800.v1.1 MD14G1011300.v1.1
prunus_persica	Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1
pyrus_communis	pycom12g01140 pycom14g01000
rosa_chinensis	RchiOBHm_Chr3g0495741
rosa_laevigata	RLG00000022591
rosa_multiflora	Rmu_sc0020877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390070
rosa_rugosa	Rorug03G0276000 Rorug03G0276100 Rorug03G0276200 Rorug03G0276300
rosa_samantha	Rh3BG359000 Rh3DG358900
rosa_wichuraiana	Rw3G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccBSI	CCGCTC	2 cut(s)	146, 433
AciI	CCGC	3 cut(s)	146, 433, 650
AclWI	GGATC	2 cut(s)	158, 265
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	2 cut(s)	358, 693
AfiI	CCNNNNNNNGG	3 cut(s)	29, 173, 668
AgsI	TTSAA	6 cut(s)	20, 116, 181, 242, 533, 556
AhlI	ACTAGT	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	457, 539
AluBI	AGCT	6 cut(s)	200, 527, 590, 599, 643, 666
AluI	AGCT	6 cut(s)	200, 527, 590, 599, 643, 666
AlwI	GGATC	2 cut(s)	158, 265
AlwNI	CAGNNNCTG	3 cut(s)	371, 590, 602
AoxI	GGCC	2 cut(s)	290, 537
ApeKI	GCWGC	7 cut(s)	62, 338, 590, 593, 596, 599, 602
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	717
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	628
BbvI	GCAGC	7 cut(s)	49, 325, 577, 580, 586, 589, 608
BciT130I	CCWGG	2 cut(s)	459, 541
BciVI	GTATCC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	289
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	2 cut(s)	27, 663
BfmI	CTRYAG	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	7 cut(s)	63, 339, 591, 594, 597, 600, 603
BlsI	GCNGC	7 cut(s)	64, 340, 592, 595, 598, 601, 604
Bme1390I	CCNGG	3 cut(s)	289, 459, 541
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	3 cut(s)	289, 459, 541
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	110, 717
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 173, 668
Bse1I	ACTGG	2 cut(s)	355, 376
BseBI	CCWGG	2 cut(s)	459, 541
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	3 cut(s)	29, 173, 668
BseMII	CTCAG	2 cut(s)	229, 618
BseNI	ACTGG	2 cut(s)	355, 376
BseXI	GCAGC	7 cut(s)	49, 325, 577, 580, 586, 589, 608
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	292, 539
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	29, 173, 668
BsnI	GGCC	2 cut(s)	292, 539
Bsp143I	GATC	3 cut(s)	163, 270, 441
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	3 cut(s)	146, 433, 650
BspANI	GGCC	2 cut(s)	292, 539
BspCNI	CTCAG	2 cut(s)	228, 619
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	158, 265
BsrBI	CCGCTC	2 cut(s)	146, 433
BsrI	ACTGG	2 cut(s)	355, 376
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	163, 270, 441
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	459, 541
Bst4CI	ACNGT	3 cut(s)	246, 361, 691
Bst6I	CTCTTC	1 cut(s)	701
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	99, 221
BstDEI	CTNAG	2 cut(s)	215, 627
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	166, 273, 444
BstMBI	GATC	3 cut(s)	163, 270, 441
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 143, 596, 599, 602
BstNI	CCWGG	2 cut(s)	459, 541
BstSCI	CCNGG	3 cut(s)	287, 457, 539
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	7 cut(s)	49, 325, 577, 580, 586, 589, 608
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	2 cut(s)	163, 270
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	2 cut(s)	163, 270
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	292, 539
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	99, 221
CaiI	CAGNNNCTG	3 cut(s)	371, 590, 602
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	357, 692
CviAII	CATG	3 cut(s)	94, 313, 738
CviQI	GTAC	2 cut(s)	357, 692
DdeI	CTNAG	2 cut(s)	215, 627
DpnI	GATC	3 cut(s)	165, 272, 443
DpnII	GATC	3 cut(s)	163, 270, 441
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	457, 539
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	97, 316, 741
FatI	CATG	3 cut(s)	93, 312, 737
Fnu4HI	GCNGC	7 cut(s)	63, 339, 591, 594, 597, 600, 603
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	7 cut(s)	63, 339, 591, 594, 597, 600, 603
FspBI	CTAG	2 cut(s)	27, 663
GluI	GCNGC	7 cut(s)	63, 339, 591, 594, 597, 600, 603
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	292, 539
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	3 cut(s)	97, 316, 741
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	723
Hpy188III	TCNNGA	4 cut(s)	113, 167, 447, 585
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	114, 166, 550, 554
HpyCH4III	ACNGT	3 cut(s)	246, 361, 691
HpyCH4IV	ACGT	2 cut(s)	465, 483
HpyCH4V	TGCA	6 cut(s)	4, 101, 260, 266, 596, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 143, 596, 599, 602
HpyF3I	CTNAG	2 cut(s)	215, 627
HpySE526I	ACGT	2 cut(s)	465, 483
Hsp92II	CATG	3 cut(s)	97, 316, 741
Kzo9I	GATC	3 cut(s)	163, 270, 441
LmnI	GCTCC	2 cut(s)	143, 587
Lsp1109I	GCAGC	7 cut(s)	49, 325, 577, 580, 586, 589, 608
LweI	GCATC	2 cut(s)	110, 717
MaeI	CTAG	2 cut(s)	27, 663
MaeII	ACGT	2 cut(s)	465, 483
MaeIII	GTNAC	6 cut(s)	88, 129, 361, 377, 461, 511
MalI	GATC	3 cut(s)	165, 272, 443
MbiI	CCGCTC	2 cut(s)	146, 433
MboI	GATC	3 cut(s)	163, 270, 441
MboII	GAAGA	4 cut(s)	633, 688, 725, 736
MflI	RGATCY	2 cut(s)	163, 270
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	4 cut(s)	48, 207, 226, 253
MluNI	TGGCCA	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	4 cut(s)	142, 298, 669, 725
Mox20I	TGGCCA	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	3 cut(s)	289, 459, 541
MvaI	CCWGG	2 cut(s)	459, 541
MwoI	GCNNNNNNNGC	5 cut(s)	59, 143, 596, 599, 602
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	163, 270, 441
NlaIII	CATG	3 cut(s)	97, 316, 741
NmuCI	GTSAC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	7 cut(s)	64, 340, 592, 595, 598, 601, 604
Ppu21I	YACGTR	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	457, 539
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	457, 539
PspPI	GGNCC	1 cut(s)	290
PsrI	GAACNNNNNNTAC	2 cut(s)	340, 372
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	3 cut(s)	371, 590, 602
PsuI	RGATCY	2 cut(s)	163, 270
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	2 cut(s)	358, 693
RsaNI	GTAC	2 cut(s)	357, 692
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	7 cut(s)	63, 339, 591, 594, 597, 600, 603
Sau3AI	GATC	3 cut(s)	163, 270, 441
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	289, 459, 541
SfaNI	GCATC	2 cut(s)	110, 717
SfcI	CTRYAG	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	4 cut(s)	48, 207, 226, 253
SsiI	CCGC	3 cut(s)	146, 433, 650
SspMI	CTAG	2 cut(s)	27, 663
StyD4I	CCNGG	3 cut(s)	287, 457, 539
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	246, 361, 691
TaiI	ACGT	2 cut(s)	468, 486
TasI	AATT	4 cut(s)	48, 207, 226, 253
TatI	WGTACW	1 cut(s)	691
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	7 cut(s)	62, 338, 590, 593, 596, 599, 602
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	6 cut(s)	219, 407, 513, 537, 570, 726
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	2 cut(s)	27, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.