Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003261

Physical Location & Seq

Genomic Coordinates Reverse (-)

27303704 .. 27304504

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGGAGGGAATTTAGGTACGAGGGTGGTTGTGATCCTGATCAAAACAACTCTTGGTTGATGCAAGAGTACGAGTTGTGTGCCACTGATCTCTTGGTGTTGTGCACCTTGAAGAAGAACCCAAGAAAAGCACGACCATCAACATCAACAGCTACTACTAGTAGTGCTCAGACCAATGGTAAGAAGAGGAAGAGGATTGTTGATAATCAACCGAGAAAAACCGAGGCAGTGAGATCAGAAAAGGCTGAGACTTGTGAGGAACAACAATCCACCATCTGTGTCGATCTTACAAATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGCTGCTGCAAGTTGTTGATGAAGATTATCATCCTGAGCTCTATCCTGAGTTACATCCTGATCTCGTTCAAAGCAATGAGCCTCTGTTTTTTATGGAGGAACTTCTTGCACCAAGTCCTCTGGATGTTCAGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCATGATCAATCATACGTCAGCGCTAATGATCAATTTCAGGATCATTCGTATGAAGACAATAGCTTCATGAGTTTCCTATCCACTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAGTTCTTGGACTGCAACGACTTAACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009987 GO:0010310 GO:0015979 GO:0016053 GO:0016740 GO:0016765 GO:0019222 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0031323 GO:0031977 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0065007 GO:0070279 GO:0071704 GO:0090322 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

222

Amino Acids

25.66

Weight (kDa)

4.4

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03630
fragaria_vesca	FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730
malus_domestica	MD12G1013800.v1.1 MD14G1011300.v1.1
prunus_persica	Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1
pyrus_communis	pycom12g01140 pycom14g01000
rosa_chinensis	RchiOBHm_Chr3g0495741
rosa_laevigata	RLG00000022591
rosa_multiflora	Rmu_sc0020877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390070
rosa_rugosa	Rorug03G0276000 Rorug03G0276100 Rorug03G0276200 Rorug03G0276300
rosa_samantha	Rh3BG359000 Rh3DG358900
rosa_wichuraiana	Rw3G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	29, 455, 468, 546
AcsI	RAATTY	2 cut(s)	11, 584
AcuI	CTGAAG	1 cut(s)	601
AfaI	GTAC	2 cut(s)	20, 71
AfeI	AGCGCT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	112, 398, 590
AhlI	ACTAGT	1 cut(s)	158
AluBI	AGCT	5 cut(s)	152, 331, 367, 561, 621
AluI	AGCT	5 cut(s)	152, 331, 367, 561, 621
Alw21I	GWGCWC	3 cut(s)	107, 169, 369
Alw26I	GTCTC	4 cut(s)	242, 296, 495, 501
Alw44I	GTGCAC	1 cut(s)	103
AlwI	GGATC	4 cut(s)	29, 455, 468, 546
AlwNI	CAGNNNCTG	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	520
ApaLI	GTGCAC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	331, 334
ApoI	RAATTY	2 cut(s)	11, 584
AspLEI	GCGC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BamHI	GGATCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	558, 612
Bbv12I	GWGCWC	3 cut(s)	107, 169, 369
BbvI	GCAGC	2 cut(s)	318, 321
BccI	CCATC	2 cut(s)	145, 281
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciVI	GTATCC	1 cut(s)	637
BclI	TGATCA	4 cut(s)	40, 502, 526, 634
BcoDI	GTCTC	4 cut(s)	242, 296, 495, 501
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	332, 335
BlsI	GCNGC	2 cut(s)	333, 336
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	558, 612
Bpu10I	CCTNAGC	1 cut(s)	363
BsaBI	GATNNNNATC	2 cut(s)	39, 357
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	409
Bse8I	GATNNNNATC	2 cut(s)	39, 357
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	358, 382, 457
BseJI	GATNNNNATC	2 cut(s)	39, 357
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	5 cut(s)	182, 237, 354, 366, 506
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	318, 321
BsiHKAI	GWGCWC	3 cut(s)	107, 169, 369
BsmAI	GTCTC	4 cut(s)	242, 296, 495, 501
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	107, 169, 369
BspCNI	CTCAG	5 cut(s)	181, 238, 355, 367, 505
BspHI	TCATGA	2 cut(s)	499, 564
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	4 cut(s)	29, 455, 468, 546
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	4 cut(s)	179, 185, 294, 471
BstDEI	CTNAG	5 cut(s)	168, 246, 363, 375, 492
BstF5I	GGATG	3 cut(s)	358, 382, 457
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstMAI	GTCTC	4 cut(s)	242, 296, 495, 501
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	318, 321
BstV2I	GAAGAC	2 cut(s)	558, 612
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	358, 382, 457
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	4 cut(s)	84, 234, 579, 637
CaiI	CAGNNNCTG	1 cut(s)	334
CciI	TCATGA	2 cut(s)	499, 564
CfoI	GCGC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	19, 70
CviAII	CATG	3 cut(s)	500, 565, 663
CviJI	RGCY	7 cut(s)	152, 245, 331, 367, 409, 561, 621
CviKI_1	RGCY	7 cut(s)	152, 245, 331, 367, 409, 561, 621
CviQI	GTAC	2 cut(s)	19, 70
DdeI	CTNAG	5 cut(s)	168, 246, 363, 375, 492
Eam1104I	CTCTTC	4 cut(s)	179, 185, 294, 471
EarI	CTCTTC	4 cut(s)	179, 185, 294, 471
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	296
Eco47III	AGCGCT	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	3 cut(s)	503, 568, 666
FaiI	YATR	6 cut(s)	422, 501, 511, 549, 566, 664
FatI	CATG	3 cut(s)	499, 564, 662
FbaI	TGATCA	4 cut(s)	40, 502, 526, 634
Fnu4HI	GCNGC	2 cut(s)	332, 335
FokI	GGATG	3 cut(s)	345, 369, 464
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	332, 335
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	2 cut(s)	332, 335
HaeII	RGCGCY	1 cut(s)	522
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	503, 568, 666
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	316, 479, 488
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	3 cut(s)	171, 238, 313
Hpy8I	GTNNAC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	5 cut(s)	64, 105, 337, 437, 651
HpyF3I	CTNAG	5 cut(s)	168, 246, 363, 375, 492
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	503, 568, 666
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	4 cut(s)	40, 502, 526, 634
LpnPI	CCDG	9 cut(s)	51, 281, 375, 387, 399, 434, 443, 521, 643
Lsp1109I	GCAGC	2 cut(s)	318, 321
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	378
MboII	GAAGA	9 cut(s)	124, 127, 196, 202, 311, 362, 458, 563, 617
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	3 cut(s)	107, 169, 369
MluCI	AATT	4 cut(s)	11, 307, 530, 584
MlyI	GAGTC	3 cut(s)	325, 488, 497
MnlI	CCTC	9 cut(s)	16, 180, 186, 217, 250, 418, 420, 456, 474
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	331
NlaIII	CATG	3 cut(s)	503, 568, 666
NlaIV	GGNNCC	1 cut(s)	462
PagI	TCATGA	2 cut(s)	499, 564
PkrI	GCNGC	2 cut(s)	333, 336
PleI	GAGTC	3 cut(s)	324, 487, 496
PpsI	GAGTC	3 cut(s)	324, 487, 496
Psp124BI	GAGCTC	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	20, 71
RsaNI	GTAC	2 cut(s)	19, 70
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	2 cut(s)	332, 335
SchI	GAGTC	3 cut(s)	325, 488, 497
SduI	GDGCHC	3 cut(s)	107, 169, 369
SetI	ASST	8 cut(s)	20, 110, 154, 333, 369, 516, 563, 623
SfaNI	GCATC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	546
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	4 cut(s)	11, 307, 530, 584
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	282, 319, 482
TasI	AATT	4 cut(s)	11, 307, 530, 584
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	4 cut(s)	91, 234, 586, 637
TseI	GCWGC	2 cut(s)	331, 334
TspDTI	ATGAA	3 cut(s)	363, 553, 564
TspRI	CASTG	4 cut(s)	91, 234, 586, 637
VneI	GTGCAC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	11, 584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.