MD14G1011300.v1.1

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
1078655 .. 1083881
5227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1011300.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGCTATGTTATCACCTCCTCTGCTTCTTCCTCTTCCTCCTCCCTTCTCGTCCCCCGGCCACCGTTTCGCTTCCTTCAAGCTCCCCAGAAATTCCACCAATGGACCTCTTCTCGGAGGACAGCTTGCAAAACGGCACGGTCTCGTGTTTGCCAAAGCTCCCTCCTATCTCTACGCCACCAGAGAAGAGCTCGACACTGTCAATATCGCCGAGGACGTCACGCAGTTGATCGGGAGCACACCCATGGTATACCTCAACAAAGTTTCCGAAGGTTGTGTGGCAAATATTGCAGCAAAGCTTGAATCTATGGAACCCTGCCGAAGTGTCAAGGATAGAATTGGCTGTAGCATGATATTGAATGCTGAGAAAAGTGGGTTAATATCTCCTGGGAAGACTGTATTAGTTGAACCAACTAGTGGAAATACAGGACTTGGTATTGCTTTTGTTGCTGCAACTAAAGGATATAAACTTATAGTCACCATGCCTGCATCCATAAATATTGAAAGGAGGATTCTTTTACGTGCATTTGGGGCAGAGGTTGTTTTGACAGATCCAGAAAAGGGTTTGAAAGGAGCGTTAGATAAAGCTGGGGAAATTGTTCTCAGCACGCCAAATTCATATATGCTTCAACAGTTTGATAATGCTGCGAATGCAGAGATCCATTTCGATGCTACCGGGCCAGAAATATGGGAGGATACCATGGGTATTGTTGACATATTTGTTGCTGCTATTGGAACTGGTGGCACTGTTACAGGCACTGGGCGTTACCTGAAAATGATGAACAAGGAGATAAAGGTAGTAGGTGTGGAACCTGCAGAGAGGAGAGTAATATCTGGAGAAAATCCAGGCTATGTACCAAGCATTTTGGACGTTAATTTGCTCGATGAGGTCATCAAGGTTACCAACGATGAAGCTGTTGAAATGGCGAGGAGGCTAGCATTGGAGGAAGGCTTACTGGTTGGTATTTCATCGGGTGCTGCTGCAGCTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAATACTGGAAAACTTATTGCGGTTATGTTTCCAAGCTTTGGTGAGAGGTATATTCCCACTGTACTTTTCCAATCAATTTACGAAGAGGTTCAGAAGATGAAGGGAAAATAA

Protein Analysis

376

Amino Acids

40.13

Weight (kDa)

6.07

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 73 - 348 9.9e-64 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 820
AccB7I CCANNNNNTGG 2 cut(s) 416, 1055
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 1037
AclWI GGATC 2 cut(s) 545, 652
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 91, 613
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 2 cut(s) 855, 1080
AfiI CCNNNNNNNGG 4 cut(s) 113, 416, 560, 1055
AgsI TTSAA 8 cut(s) 79, 302, 358, 407, 503, 568, 629, 920
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 2 cut(s) 385, 844
AluBI AGCT 9 cut(s) 82, 124, 158, 190, 298, 587, 914, 986, 1053
AluI AGCT 9 cut(s) 82, 124, 158, 190, 298, 587, 914, 986, 1053
Alw21I GWGCWC 2 cut(s) 192, 239
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 545, 652
AlwNI CAGNNNCTG 2 cut(s) 758, 989
AoxI GGCC 2 cut(s) 58, 677
ApeKI GCWGC 9 cut(s) 290, 449, 644, 725, 977, 980, 983, 986, 989
ApoI RAATTY 2 cut(s) 91, 613
Asp700I GAANNNNTTC 2 cut(s) 597, 1104
AspS9I GGNCC 2 cut(s) 104, 677
AsuC2I CCSGG 2 cut(s) 57, 676
AsuHPI GGTGA 3 cut(s) 6, 469, 1070
AsuNHI GCTAGC 1 cut(s) 934
AvaII GGWCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 398, 1015
Bbv12I GWGCWC 2 cut(s) 192, 239
BbvI GCAGC 9 cut(s) 302, 436, 631, 712, 964, 967, 973, 976, 995
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 2 cut(s) 387, 846
BciVI GTATCC 1 cut(s) 688
BcnI CCSGG 2 cut(s) 57, 676
BcoDI GTCTC 1 cut(s) 146
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 414, 935
BfmI CTRYAG 3 cut(s) 343, 813, 981
BfuAI ACCTGC 1 cut(s) 820
BfuI GTATCC 1 cut(s) 688
BisI GCNGC 9 cut(s) 291, 450, 645, 726, 978, 981, 984, 987, 990
BlsI GCNGC 9 cut(s) 292, 451, 646, 727, 979, 982, 985, 988, 991
Bme1390I CCNGG 4 cut(s) 57, 387, 676, 846
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 104, 677
BmiI GGNNCC 2 cut(s) 312, 810
BmrFI CCNGG 4 cut(s) 57, 387, 676, 846
BmrI ACTGGG 1 cut(s) 768
BmsI GCATC 2 cut(s) 497, 658
BmtI GCTAGC 1 cut(s) 938
BmuI ACTGGG 1 cut(s) 768
BpiI GAAGAC 2 cut(s) 398, 1015
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 1 cut(s) 855
BpuMI CCSGG 2 cut(s) 57, 676
BsaAI YACGTR 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 5 cut(s) 55, 210, 243, 386, 699
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 416, 560, 1055
Bse1I ACTGG 4 cut(s) 742, 763, 960, 1027
BseBI CCWGG 2 cut(s) 387, 846
BseDI CCNNGG 5 cut(s) 55, 210, 243, 386, 699
BseGI GGATG 1 cut(s) 488
BseLI CCNNNNNNNGG 4 cut(s) 113, 416, 560, 1055
BseMII CTCAG 3 cut(s) 354, 616, 1005
BseNI ACTGG 4 cut(s) 742, 763, 960, 1027
BseRI GAGGAG 4 cut(s) 9, 30, 835, 943
BseXI GCAGC 9 cut(s) 302, 436, 631, 712, 964, 967, 973, 976, 995
BseYI CCCAGC 1 cut(s) 587
BshFI GGCC 2 cut(s) 60, 679
BsiHKAI GWGCWC 2 cut(s) 192, 239
BsiSI CCGG 2 cut(s) 57, 675
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 113, 416, 560, 1055
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 2 cut(s) 364, 655
BsnI GGCC 2 cut(s) 60, 679
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 192, 239
Bsp143I GATC 3 cut(s) 228, 550, 657
Bsp19I CCATGG 2 cut(s) 243, 699
BspACI CCGC 1 cut(s) 1037
BspANI GGCC 2 cut(s) 60, 679
BspCNI CTCAG 3 cut(s) 355, 615, 1006
BspLI GGNNCC 2 cut(s) 312, 810
BspMAI CTGCAG 2 cut(s) 817, 985
BspMI ACCTGC 1 cut(s) 820
BspOI GCTAGC 1 cut(s) 938
BspPI GGATC 2 cut(s) 545, 652
BspQI GCTCTTC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 4 cut(s) 742, 763, 960, 1027
BssECI CCNNGG 5 cut(s) 55, 210, 243, 386, 699
BssMI GATC 3 cut(s) 228, 550, 657
BssNAI GTATAC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 2 cut(s) 243, 699
Bst1107I GTATAC 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 387, 846
Bst4CI ACNGT 7 cut(s) 65, 140, 199, 397, 633, 748, 1078
Bst6I CTCTTC 4 cut(s) 39, 114, 180, 1095
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 2 cut(s) 287, 989
BstBAI YACGTR 1 cut(s) 521
BstC8I GCNNGC 4 cut(s) 126, 486, 608, 936
BstDEI CTNAG 3 cut(s) 363, 602, 1014
BstDSI CCRYGG 2 cut(s) 243, 699
BstEII GGTNACC 1 cut(s) 898
BstF5I GGATG 1 cut(s) 488
BstKTI GATC 3 cut(s) 231, 553, 660
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 228, 550, 657
BstMWI GCNNNNNNNGC 7 cut(s) 287, 446, 530, 650, 983, 986, 989
BstNI CCWGG 2 cut(s) 387, 846
BstPI GGTNACC 1 cut(s) 898
BstSCI CCNGG 4 cut(s) 55, 385, 674, 844
BstSFI CTRYAG 3 cut(s) 343, 813, 981
BstV1I GCAGC 9 cut(s) 302, 436, 631, 712, 964, 967, 973, 976, 995
BstV2I GAAGAC 2 cut(s) 398, 1015
BstX2I RGATCY 2 cut(s) 550, 657
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 2 cut(s) 550, 657
BstZ17I GTATAC 1 cut(s) 250
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 2 cut(s) 60, 679
BtgI CCRYGG 2 cut(s) 243, 699
BtsCI GGATG 1 cut(s) 488
BtsIMutI CAGTG 4 cut(s) 195, 744, 756, 1074
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 4 cut(s) 126, 486, 608, 936
CaiI CAGNNNCTG 2 cut(s) 758, 989
Cfr13I GGNCC 2 cut(s) 104, 677
Csp6I GTAC 2 cut(s) 854, 1079
CviAII CATG 4 cut(s) 244, 349, 481, 700
CviQI GTAC 2 cut(s) 854, 1079
DdeI CTNAG 3 cut(s) 363, 602, 1014
DpnI GATC 3 cut(s) 230, 552, 659
DpnII GATC 3 cut(s) 228, 550, 657
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 4 cut(s) 39, 114, 180, 1095
EarI CTCTTC 4 cut(s) 39, 114, 180, 1095
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 243, 699
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 898
EcoICRI GAGCTC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 385, 844
EcoT14I CCWWGG 2 cut(s) 243, 699
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 2 cut(s) 243, 699
FaeI CATG 4 cut(s) 247, 352, 484, 703
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 243, 348, 480, 699
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 9 cut(s) 291, 450, 645, 726, 978, 981, 984, 987, 990
FokI GGATG 1 cut(s) 475
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 9 cut(s) 291, 450, 645, 726, 978, 981, 984, 987, 990
FspBI CTAG 2 cut(s) 414, 935
GluI GCNGC 9 cut(s) 291, 450, 645, 726, 978, 981, 984, 987, 990
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 2 cut(s) 60, 679
HapII CCGG 2 cut(s) 57, 675
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 4 cut(s) 247, 352, 484, 703
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 2 cut(s) 296, 1051
HinfI GANTC 2 cut(s) 302, 511
HpaII CCGG 2 cut(s) 57, 675
HphI GGTGA 3 cut(s) 6, 469, 1070
Hpy166II GTNNAC 2 cut(s) 250, 712
Hpy188I TCNGA 3 cut(s) 116, 268, 1110
Hpy188III TCNNGA 3 cut(s) 232, 554, 834
Hpy8I GTNNAC 2 cut(s) 250, 712
HpyAV CCTTC 5 cut(s) 55, 85, 263, 941, 1111
HpyCH4III ACNGT 7 cut(s) 65, 140, 199, 397, 633, 748, 1078
HpyCH4IV ACGT 3 cut(s) 216, 520, 870
HpyCH4V TGCA 9 cut(s) 128, 290, 452, 488, 524, 653, 815, 983, 992
HpyF10VI GCNNNNNNNGC 7 cut(s) 287, 446, 530, 650, 983, 986, 989
HpyF3I CTNAG 3 cut(s) 363, 602, 1014
HpySE526I ACGT 3 cut(s) 216, 520, 870
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 4 cut(s) 247, 352, 484, 703
Kzo9I GATC 3 cut(s) 228, 550, 657
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 4 cut(s) 87, 163, 234, 572
Lsp1109I GCAGC 9 cut(s) 302, 436, 631, 712, 964, 967, 973, 976, 995
LweI GCATC 2 cut(s) 497, 658
MaeI CTAG 2 cut(s) 414, 935
MaeII ACGT 3 cut(s) 216, 520, 870
MaeIII GTNAC 5 cut(s) 217, 475, 748, 764, 898
MalI GATC 3 cut(s) 230, 552, 659
MboI GATC 3 cut(s) 228, 550, 657
MboII GAAGA 8 cut(s) 20, 26, 101, 197, 403, 1020, 1112, 1123
MflI RGATCY 2 cut(s) 550, 657
MhlI GDGCHC 2 cut(s) 192, 239
MluCI AATT 6 cut(s) 91, 336, 594, 613, 874, 1092
MroXI GAANNNNTTC 2 cut(s) 597, 1104
MseI TTAA 2 cut(s) 377, 873
MslI CAYNNNNRTG 2 cut(s) 242, 666
MspA1I CMGCKG 1 cut(s) 986
MspI CCGG 2 cut(s) 57, 675
MspR9I CCNGG 4 cut(s) 57, 387, 676, 846
Mva1269I GAATGC 2 cut(s) 364, 655
MvaI CCWGG 2 cut(s) 387, 846
MwoI GCNNNNNNNGC 7 cut(s) 287, 446, 530, 650, 983, 986, 989
NciI CCSGG 2 cut(s) 57, 676
NcoI CCATGG 2 cut(s) 243, 699
NdeII GATC 3 cut(s) 228, 550, 657
NheI GCTAGC 1 cut(s) 934
NlaIII CATG 4 cut(s) 247, 352, 484, 703
NlaIV GGNNCC 2 cut(s) 312, 810
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 217, 475
PciSI GCTCTTC 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 2 cut(s) 364, 655
PdmI GAANNNNTTC 2 cut(s) 597, 1104
PfeI GAWTC 2 cut(s) 302, 511
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 2 cut(s) 416, 1055
PkrI GCNGC 9 cut(s) 292, 451, 646, 727, 979, 982, 985, 988, 991
Ppu21I YACGTR 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 385, 844
PspEI GGTNACC 1 cut(s) 898
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 385, 844
PspN4I GGNNCC 2 cut(s) 312, 810
PspPI GGNCC 2 cut(s) 104, 677
PstI CTGCAG 2 cut(s) 817, 985
PstNI CAGNNNCTG 2 cut(s) 758, 989
PsuI RGATCY 2 cut(s) 550, 657
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 2 cut(s) 855, 1080
RsaNI GTAC 2 cut(s) 854, 1079
RseI CAYNNNNRTG 2 cut(s) 242, 666
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 377, 873
SatI GCNGC 9 cut(s) 291, 450, 645, 726, 978, 981, 984, 987, 990
Sau3AI GATC 3 cut(s) 228, 550, 657
Sau96I GGNCC 2 cut(s) 104, 677
ScrFI CCNGG 4 cut(s) 57, 387, 676, 846
SduI GDGCHC 2 cut(s) 192, 239
SfaNI GCATC 2 cut(s) 497, 658
SfcI CTRYAG 3 cut(s) 343, 813, 981
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 242, 666
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 6 cut(s) 91, 336, 594, 613, 874, 1092
SsiI CCGC 1 cut(s) 1037
SspI AATATT 2 cut(s) 286, 499
SspMI CTAG 2 cut(s) 414, 935
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 55, 385, 674, 844
StyI CCWWGG 2 cut(s) 243, 699
TaaI ACNGT 7 cut(s) 65, 140, 199, 397, 633, 748, 1078
TaiI ACGT 3 cut(s) 219, 523, 873
TaqI TCGA 3 cut(s) 192, 666, 882
TasI AATT 6 cut(s) 91, 336, 594, 613, 874, 1092
TatI WGTACW 1 cut(s) 1078
TfiI GAWTC 2 cut(s) 302, 511
Tru1I TTAA 2 cut(s) 377, 873
Tru9I TTAA 2 cut(s) 377, 873
TscAI CASTG 4 cut(s) 202, 751, 763, 1081
TseFI GTSAC 2 cut(s) 217, 475
TseI GCWGC 9 cut(s) 290, 449, 644, 725, 977, 980, 983, 986, 989
Tsp45I GTSAC 2 cut(s) 217, 475
TspDTI ATGAA 4 cut(s) 606, 794, 924, 957
TspRI CASTG 4 cut(s) 202, 751, 763, 1081
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 2 cut(s) 416, 1055
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 2 cut(s) 91, 613
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 2 cut(s) 597, 1104
XspI CTAG 2 cut(s) 414, 935
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.