RchiOBHm_Chr3g0495741

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
45712650 .. 45718731
6082 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45812

Sequence Viewer

Length: 1140 bp
ATGGCTACATTATCAGTTCCTCCACTTGTTCCTCTTCCCCTGTGTATTCTTCCTCCACGGCAACCATTCGCATCCTTCAAGCTTCCCTCATCCACTAATGGAGCTCTTCTCCCGTTTCCCATGCTTACCCTCCTACCCACTAAGCGCTCCCGTTTCGTGTTCCCCAAAGCCTCCTCCTCTGTTTACGCCACCATTGACGAGCTCGACACTGTCAATATTGCCGAGGACGTAACCCAGTTAGTTGGGAGAACACCCATGGTATACCTCAACAAAGTTAGCGGAGGTTGTGTGGCGAATATTGCGGCAAAGCTCGAGTCTATGGAACCCTGCCGAAGTGTCAAGGATAGAATTGGCTGTAGCATGATATCCAATGCAGAGAAAAGTGGATTAATATCTCCTGGGAAGAATGTATTGGTTGAACCAACTAGTGGAAATACAGGGCTCGGAATTGCTTTTGTTGCTGCTACCAAAGGGTATAAACTCATAGTGACCATGCCTGCATCCATAAATCTTGAAAGAAGGATTCTGTTACGGGCATTTGGAGCGGAGGTTGTTTTGACAGATCCAGAGAAGGGTTTGAAAGGGGCTTTAGATAAAGCTGAACAAATTGTTCTCAGCACGCCAAATTCATTTATGCTTCAACAGTTTGATAATACTGCAAATGCAAAGATCCATTTTGATACTACCGGGCCAGAGATATGGGAGGATACCATGGGAAGTGTTGACATTTTTGTTGCTGCTATTGGAACTGGTGGTACTGTTACAGGCACTGGGCGTTACCTGAAAGCGATGAACAAAGAGATAAAGGTAGTAGGTGTAGAACCAGCAGAGCGGAGTGTGATCTCCGGAGAAAATCCAGGTTACATGCCAAGCATATTGGATGTTAATCTGCTTGATGAAGTCATCAAGGTTACGAATGATGAAGCTGTTGAAATGGCCAGGAGATTAGCATTGAAGGAAGGTTTGCTGGTTGGTATTTCATCAGGAGCTGCTGCAGTTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAACGCTGGAAAACTTATTGCGGTTGTATTTCCTAGCTTTGGTGAGAGGTATATTCCAACTGTACTCTTCCAATCCATATATGAAGATGTTCAGAAGATGCGAGGAACATGA

Protein Analysis

379

Amino Acids

40.47

Weight (kDa)

7.58

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 77 - 354 5.8e-65 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 428
AccBSI CCGCTC 2 cut(s) 545, 832
AccI GTMKAC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 845
AciI CCGC 5 cut(s) 279, 302, 545, 832, 1049
AclWI GGATC 2 cut(s) 557, 664
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 1 cut(s) 625
AfaI GTAC 2 cut(s) 757, 1092
AfeI AGCGCT 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 428, 572, 1067
AgsI TTSAA 7 cut(s) 79, 419, 515, 580, 641, 932, 955
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 3 cut(s) 397, 856, 938
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 8 cut(s) 82, 104, 202, 310, 599, 926, 989, 1065
AluI AGCT 8 cut(s) 82, 104, 202, 310, 599, 926, 989, 1065
Alw21I GWGCWC 2 cut(s) 106, 204
AlwI GGATC 2 cut(s) 557, 664
AlwNI CAGNNNCTG 3 cut(s) 770, 989, 1001
Ama87I CYCGRG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 845
Aor51HI AGCGCT 1 cut(s) 146
AoxI GGCC 2 cut(s) 689, 936
ApeKI GCWGC 5 cut(s) 461, 737, 989, 992, 1001
ApoI RAATTY 1 cut(s) 625
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AseI ATTAAT 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 1 cut(s) 1082
AvaI CYCGRG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 3 cut(s) 106, 204, 444
BbsI GAAGAC 1 cut(s) 1027
Bbv12I GWGCWC 2 cut(s) 106, 204
BbvI GCAGC 5 cut(s) 448, 724, 976, 979, 988
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 399, 858, 940
BciVI GTATCC 1 cut(s) 700
BcnI CCSGG 1 cut(s) 688
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 2 cut(s) 426, 1062
BfmI CTRYAG 2 cut(s) 355, 993
BfoI RGCGCY 1 cut(s) 148
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 6 cut(s) 303, 462, 738, 990, 993, 1002
BlsI GCNGC 6 cut(s) 304, 463, 739, 991, 994, 1003
Bme1390I CCNGG 4 cut(s) 399, 688, 858, 940
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 4 cut(s) 399, 688, 858, 940
BmrI ACTGGG 2 cut(s) 229, 780
BmsI GCATC 3 cut(s) 80, 509, 1116
BmuI ACTGGG 2 cut(s) 229, 780
BpiI GAAGAC 1 cut(s) 1027
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpuMI CCSGG 1 cut(s) 688
BsaBI GATNNNNATC 2 cut(s) 391, 885
BsaJI CCNNGG 5 cut(s) 56, 222, 255, 398, 711
BsaWI WCCGGW 1 cut(s) 845
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 572, 1067
Bse1I ACTGG 3 cut(s) 235, 754, 775
Bse8I GATNNNNATC 2 cut(s) 391, 885
BseAI TCCGGA 1 cut(s) 845
BseBI CCWGG 3 cut(s) 399, 858, 940
BseDI CCNNGG 5 cut(s) 56, 222, 255, 398, 711
BseGI GGATG 4 cut(s) 71, 89, 500, 886
BseJI GATNNNNATC 2 cut(s) 391, 885
BseLI CCNNNNNNNGG 3 cut(s) 428, 572, 1067
BseMII CTCAG 2 cut(s) 628, 1017
BseNI ACTGG 3 cut(s) 235, 754, 775
BseRI GAGGAG 2 cut(s) 163, 166
BseXI GCAGC 5 cut(s) 448, 724, 976, 979, 988
BshFI GGCC 2 cut(s) 691, 938
BsiHKAI GWGCWC 2 cut(s) 106, 204
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 687, 846
BslI CCNNNNNNNGG 3 cut(s) 428, 572, 1067
BsnI GGCC 2 cut(s) 691, 938
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 106, 204, 444
Bsp13I TCCGGA 1 cut(s) 845
Bsp143I GATC 3 cut(s) 562, 669, 840
Bsp19I CCATGG 2 cut(s) 255, 711
BspACI CCGC 5 cut(s) 279, 302, 545, 832, 1049
BspANI GGCC 2 cut(s) 691, 938
BspCNI CTCAG 2 cut(s) 627, 1018
BspEI TCCGGA 1 cut(s) 845
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 997
BspPI GGATC 2 cut(s) 557, 664
BspQI GCTCTTC 1 cut(s) 111
BsrBI CCGCTC 2 cut(s) 545, 832
BsrI ACTGG 3 cut(s) 235, 754, 775
BssECI CCNNGG 5 cut(s) 56, 222, 255, 398, 711
BssMI GATC 3 cut(s) 562, 669, 840
BssNAI GTATAC 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 255, 711
Bst1107I GTATAC 1 cut(s) 262
Bst2UI CCWGG 3 cut(s) 399, 858, 940
Bst4CI ACNGT 4 cut(s) 211, 645, 760, 1090
Bst6I CTCTTC 3 cut(s) 39, 111, 1100
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstC8I GCNNGC 2 cut(s) 498, 620
BstDEI CTNAG 3 cut(s) 141, 614, 1026
BstDSI CCRYGG 3 cut(s) 56, 255, 711
BstF5I GGATG 4 cut(s) 71, 89, 500, 886
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 565, 672, 843
BstMBI GATC 3 cut(s) 562, 669, 840
BstMWI GCNNNNNNNGC 5 cut(s) 299, 458, 542, 998, 1001
BstNI CCWGG 3 cut(s) 399, 858, 940
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 4 cut(s) 397, 686, 856, 938
BstSFI CTRYAG 2 cut(s) 355, 993
BstV1I GCAGC 5 cut(s) 448, 724, 976, 979, 988
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 2 cut(s) 562, 669
BstXI CCANNNNNNTGG 2 cut(s) 242, 699
BstYI RGATCY 2 cut(s) 562, 669
BstZ17I GTATAC 1 cut(s) 262
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 691, 938
BtgI CCRYGG 3 cut(s) 56, 255, 711
BtgZI GCGATG 1 cut(s) 803
BtsCI GGATG 4 cut(s) 71, 89, 500, 886
BtsIMutI CAGTG 2 cut(s) 207, 768
Cac8I GCNNGC 2 cut(s) 498, 620
CaiI CAGNNNCTG 3 cut(s) 770, 989, 1001
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 756, 1091
CviAII CATG 7 cut(s) 121, 256, 361, 493, 712, 865, 1137
CviQI GTAC 2 cut(s) 756, 1091
DdeI CTNAG 3 cut(s) 141, 614, 1026
DpnI GATC 3 cut(s) 564, 671, 842
DpnII GATC 3 cut(s) 562, 669, 840
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 3 cut(s) 39, 111, 1100
EarI CTCTTC 3 cut(s) 39, 111, 1100
Ecl136II GAGCTC 2 cut(s) 104, 202
Eco130I CCWWGG 2 cut(s) 255, 711
Eco24I GRGCYC 3 cut(s) 106, 204, 444
Eco32I GATATC 1 cut(s) 366
Eco47III AGCGCT 1 cut(s) 146
Eco53kI GAGCTC 2 cut(s) 104, 202
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 104, 202
EcoRII CCWGG 3 cut(s) 397, 856, 938
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 255, 711
EcoT38I GRGCYC 3 cut(s) 106, 204, 444
ErhI CCWWGG 2 cut(s) 255, 711
FaeI CATG 7 cut(s) 124, 259, 364, 496, 715, 868, 1140
FatI CATG 7 cut(s) 120, 255, 360, 492, 711, 864, 1136
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 6 cut(s) 303, 462, 738, 990, 993, 1002
FokI GGATG 4 cut(s) 58, 76, 487, 893
FriOI GRGCYC 3 cut(s) 106, 204, 444
Fsp4HI GCNGC 6 cut(s) 303, 462, 738, 990, 993, 1002
FspBI CTAG 2 cut(s) 426, 1062
GlaI GCGC 1 cut(s) 146
GluI GCNGC 6 cut(s) 303, 462, 738, 990, 993, 1002
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 2 cut(s) 691, 938
HapII CCGG 2 cut(s) 687, 846
HhaI GCGC 1 cut(s) 147
Hin1II CATG 7 cut(s) 124, 259, 364, 496, 715, 868, 1140
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 314, 523
HpaII CCGG 2 cut(s) 687, 846
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 3 cut(s) 184, 262, 724
Hpy188I TCNGA 2 cut(s) 446, 1122
Hpy188III TCNNGA 4 cut(s) 512, 566, 846, 984
Hpy8I GTNNAC 3 cut(s) 184, 262, 724
HpyAV CCTTC 5 cut(s) 85, 513, 565, 949, 953
HpyCH4III ACNGT 4 cut(s) 211, 645, 760, 1090
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 374, 500, 659, 665, 995, 1004
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 458, 542, 998, 1001
HpyF3I CTNAG 3 cut(s) 141, 614, 1026
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 7 cut(s) 124, 259, 364, 496, 715, 868, 1140
HspAI GCGC 1 cut(s) 145
Kpn2I TCCGGA 1 cut(s) 845
Kzo9I GATC 3 cut(s) 562, 669, 840
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 4 cut(s) 101, 152, 542, 986
Lsp1109I GCAGC 5 cut(s) 448, 724, 976, 979, 988
LweI GCATC 3 cut(s) 80, 509, 1116
MaeI CTAG 2 cut(s) 426, 1062
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 7 cut(s) 229, 487, 528, 760, 776, 860, 910
MalI GATC 3 cut(s) 564, 671, 842
MbiI CCGCTC 2 cut(s) 545, 832
MboI GATC 3 cut(s) 562, 669, 840
MboII GAAGA 8 cut(s) 26, 41, 98, 415, 1032, 1087, 1124, 1135
MflI RGATCY 2 cut(s) 562, 669
MhlI GDGCHC 3 cut(s) 106, 204, 444
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 4 cut(s) 348, 447, 606, 625
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 1109
Mox20I TGGCCA 1 cut(s) 938
MroI TCCGGA 1 cut(s) 845
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 938
MseI TTAA 2 cut(s) 389, 885
Msp20I TGGCCA 1 cut(s) 938
MspI CCGG 2 cut(s) 687, 846
MspR9I CCNGG 4 cut(s) 399, 688, 858, 940
MvaI CCWGG 3 cut(s) 399, 858, 940
MwoI GCNNNNNNNGC 5 cut(s) 299, 458, 542, 998, 1001
NciI CCSGG 1 cut(s) 688
NcoI CCATGG 2 cut(s) 255, 711
NdeII GATC 3 cut(s) 562, 669, 840
NlaIII CATG 7 cut(s) 124, 259, 364, 496, 715, 868, 1140
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 1 cut(s) 868
PaeR7I CTCGAG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 1 cut(s) 523
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 6 cut(s) 304, 463, 739, 991, 994, 1003
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 389
Psp124BI GAGCTC 2 cut(s) 106, 204
Psp6I CCWGG 3 cut(s) 397, 856, 938
PspGI CCWGG 3 cut(s) 397, 856, 938
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 689
PspXI VCTCGAGB 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 739, 771
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 3 cut(s) 770, 989, 1001
PsuI RGATCY 2 cut(s) 562, 669
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 2 cut(s) 757, 1092
RsaNI GTAC 2 cut(s) 756, 1091
SacI GAGCTC 2 cut(s) 106, 204
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 389, 885
SatI GCNGC 6 cut(s) 303, 462, 738, 990, 993, 1002
Sau3AI GATC 3 cut(s) 562, 669, 840
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 4 cut(s) 399, 688, 858, 940
SduI GDGCHC 3 cut(s) 106, 204, 444
SfaNI GCATC 3 cut(s) 80, 509, 1116
SfcI CTRYAG 2 cut(s) 355, 993
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 4 cut(s) 348, 447, 606, 625
SsiI CCGC 5 cut(s) 279, 302, 545, 832, 1049
SspI AATATT 2 cut(s) 217, 298
SspMI CTAG 2 cut(s) 426, 1062
SstI GAGCTC 2 cut(s) 106, 204
StyD4I CCNGG 4 cut(s) 397, 686, 856, 938
StyI CCWWGG 2 cut(s) 255, 711
TaaI ACNGT 4 cut(s) 211, 645, 760, 1090
TaiI ACGT 1 cut(s) 231
TaqI TCGA 2 cut(s) 204, 312
TasI AATT 4 cut(s) 348, 447, 606, 625
TatI WGTACW 1 cut(s) 1090
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 2 cut(s) 389, 885
Tru9I TTAA 2 cut(s) 389, 885
TscAI CASTG 2 cut(s) 214, 775
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 5 cut(s) 461, 737, 989, 992, 1001
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 6 cut(s) 618, 806, 912, 936, 969, 1125
TspRI CASTG 2 cut(s) 214, 775
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 428
VspI ATTAAT 1 cut(s) 389
XapI RAATTY 1 cut(s) 625
XceI RCATGY 1 cut(s) 868
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 2 cut(s) 426, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.