Rh3DG358900

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
43957833 .. 43962319
4487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG358900.1

Sequence Viewer

Length: 1074 bp
ATGGCTACATTATCAGTTCCTCCGCCTGTTCCTCTTCCCCTGTGTATTCTTCCTCCACGGCAACCATTCGCATCCTTCAAGCTTCCCTCATCCACTAATGGAGCTCTTCTCCCGTTTCCCATGCTTACCCTCCTACCCACTAAGCGGTCTCGTTTCGTGTTCCCCAAAGCCTCCTCCTCTGTTTACGCCACCATTGACGAGCTCGACACGGTCAATATTGCCGAGGACGTAACCCAGTTAGTTGGGAGAACACCCATGGTATACCTCAACAAAGTTAGCGGAGGTTGTGTGGCGAATATTGCGGCAAAGCTCGAGTCTATGGAACCCTGCCGAAGTGTCAAGGATAGAATTGGCTGTAGCATGATATCCAATGCAGAGAAAAGTGGATTAATATCTCCTGGGAAGAATGTATTGGTTGAACCAACTAGTGGAAATACAGGGCTCGGAATTGCTTTTGTTGCTGCTACCAAAGGGTATAAACTCATAGTGACCATGCCTGCATCCATAAATCTTGAAAGAAGGATTCTGTTACGGGCATTTGGAGCGGAGGTTGTTTTGACAGATCCAGAGAAGGGTTTGAAAGGGGCTTTAGATAAAGCTGAACAAATTGTTCTCAGCACGCCAAATTCATTTATGCTTCAACAGTTTGATAATTCTGCAAATGCAAAGATCCATTTTGATACTACCGGGCCAGAGATATGGGAGGATACCATGGGAAGTGTTGACATTTTTGTTGCTGCTATTGGAACTGGTGGTACTGTTACAGGCACTGGGCGTTACCTGAAAGCGATGAACAAAGAGATAAAGGTAGTAGGTGTAGAACCAGCAGAGCGGAGTGTGATCTCTGGAGAAAATCCAGGTTACGTGCCAAGCATATTGGACGTTAATCTGCTTGATGAAGTCATCAAGGTTACGAATGATGAAGCTGTTGAAATGGCCAGGAGATTAGCATTGAAGGAAGGTTTGCTGGTTGGTATTTCATCAGGAGCTGCTGCAGCTGCTGCAATAAGTTTAGCAAGAAGACCTGAGAACGCTGGAAAGCTTATTGCGGGCTTGGTGTTGGTTAAATCATAA

Protein Analysis

357

Amino Acids

37.69

Weight (kDa)

8.25

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 77 - 346 4e-65 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 428
AccBSI CCGCTC 2 cut(s) 545, 832
AccI GTMKAC 1 cut(s) 261
AciI CCGC 7 cut(s) 23, 145, 279, 302, 545, 832, 1049
AclWI GGATC 2 cut(s) 557, 664
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 1 cut(s) 625
AfaI GTAC 1 cut(s) 757
AfiI CCNNNNNNNGG 3 cut(s) 144, 428, 572
AgsI TTSAA 7 cut(s) 79, 419, 515, 580, 641, 932, 955
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 3 cut(s) 397, 856, 938
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 9 cut(s) 82, 104, 202, 310, 599, 926, 989, 998, 1042
AluI AGCT 9 cut(s) 82, 104, 202, 310, 599, 926, 989, 998, 1042
Alw21I GWGCWC 2 cut(s) 106, 204
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 2 cut(s) 557, 664
AlwNI CAGNNNCTG 3 cut(s) 770, 989, 1001
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 2 cut(s) 689, 936
ApeKI GCWGC 7 cut(s) 461, 737, 989, 992, 995, 998, 1001
ApoI RAATTY 1 cut(s) 625
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AseI ATTAAT 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 688
AvaI CYCGRG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 3 cut(s) 106, 204, 444
BbsI GAAGAC 1 cut(s) 1027
Bbv12I GWGCWC 2 cut(s) 106, 204
BbvI GCAGC 7 cut(s) 448, 724, 976, 979, 985, 988, 1007
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 399, 858, 940
BciVI GTATCC 1 cut(s) 700
BcnI CCSGG 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 153
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 2 cut(s) 355, 993
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 8 cut(s) 303, 462, 738, 990, 993, 996, 999, 1002
BlsI GCNGC 8 cut(s) 304, 463, 739, 991, 994, 997, 1000, 1003
Bme1390I CCNGG 4 cut(s) 399, 688, 858, 940
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 4 cut(s) 399, 688, 858, 940
BmrI ACTGGG 2 cut(s) 229, 780
BmsI GCATC 2 cut(s) 80, 509
BmuI ACTGGG 2 cut(s) 229, 780
BpiI GAAGAC 1 cut(s) 1027
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 867
BpuMI CCSGG 1 cut(s) 688
BsaAI YACGTR 1 cut(s) 865
BsaBI GATNNNNATC 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 5 cut(s) 56, 222, 255, 398, 711
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 428, 572
Bse1I ACTGG 3 cut(s) 235, 754, 775
Bse8I GATNNNNATC 1 cut(s) 391
BseBI CCWGG 3 cut(s) 399, 858, 940
BseDI CCNNGG 5 cut(s) 56, 222, 255, 398, 711
BseGI GGATG 3 cut(s) 71, 89, 500
BseJI GATNNNNATC 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 144, 428, 572
BseMII CTCAG 2 cut(s) 628, 1017
BseNI ACTGG 3 cut(s) 235, 754, 775
BseRI GAGGAG 2 cut(s) 163, 166
BseXI GCAGC 7 cut(s) 448, 724, 976, 979, 985, 988, 1007
BshFI GGCC 2 cut(s) 691, 938
BsiHKAI GWGCWC 2 cut(s) 106, 204
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 687
BslI CCNNNNNNNGG 3 cut(s) 144, 428, 572
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 2 cut(s) 691, 938
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 106, 204, 444
Bsp143I GATC 3 cut(s) 562, 669, 840
Bsp19I CCATGG 2 cut(s) 255, 711
BspACI CCGC 7 cut(s) 23, 145, 279, 302, 545, 832, 1049
BspANI GGCC 2 cut(s) 691, 938
BspCNI CTCAG 2 cut(s) 627, 1018
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 997
BspPI GGATC 2 cut(s) 557, 664
BspQI GCTCTTC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 153
BsrBI CCGCTC 2 cut(s) 545, 832
BsrI ACTGG 3 cut(s) 235, 754, 775
BssECI CCNNGG 5 cut(s) 56, 222, 255, 398, 711
BssMI GATC 3 cut(s) 562, 669, 840
BssNAI GTATAC 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 255, 711
Bst1107I GTATAC 1 cut(s) 262
Bst2UI CCWGG 3 cut(s) 399, 858, 940
Bst4CI ACNGT 3 cut(s) 211, 645, 760
Bst6I CTCTTC 2 cut(s) 39, 111
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstBAI YACGTR 1 cut(s) 865
BstC8I GCNNGC 3 cut(s) 498, 620, 1051
BstDEI CTNAG 3 cut(s) 141, 614, 1026
BstDSI CCRYGG 3 cut(s) 56, 255, 711
BstF5I GGATG 3 cut(s) 71, 89, 500
BstKTI GATC 3 cut(s) 565, 672, 843
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 562, 669, 840
BstMWI GCNNNNNNNGC 6 cut(s) 299, 458, 542, 995, 998, 1001
BstNI CCWGG 3 cut(s) 399, 858, 940
BstSCI CCNGG 4 cut(s) 397, 686, 856, 938
BstSFI CTRYAG 2 cut(s) 355, 993
BstV1I GCAGC 7 cut(s) 448, 724, 976, 979, 985, 988, 1007
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 2 cut(s) 562, 669
BstXI CCANNNNNNTGG 2 cut(s) 242, 699
BstYI RGATCY 2 cut(s) 562, 669
BstZ17I GTATAC 1 cut(s) 262
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 691, 938
BtgI CCRYGG 3 cut(s) 56, 255, 711
BtgZI GCGATG 1 cut(s) 803
BtsCI GGATG 3 cut(s) 71, 89, 500
BtsIMutI CAGTG 1 cut(s) 768
Cac8I GCNNGC 3 cut(s) 498, 620, 1051
CaiI CAGNNNCTG 3 cut(s) 770, 989, 1001
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 1 cut(s) 756
CviAII CATG 5 cut(s) 121, 256, 361, 493, 712
CviQI GTAC 1 cut(s) 756
DdeI CTNAG 3 cut(s) 141, 614, 1026
DpnI GATC 3 cut(s) 564, 671, 842
DpnII GATC 3 cut(s) 562, 669, 840
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 39, 111
EarI CTCTTC 2 cut(s) 39, 111
EciI GGCGGA 1 cut(s) 12
Ecl136II GAGCTC 2 cut(s) 104, 202
Eco130I CCWWGG 2 cut(s) 255, 711
Eco24I GRGCYC 3 cut(s) 106, 204, 444
Eco31I GGTCTC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 366
Eco53kI GAGCTC 2 cut(s) 104, 202
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 104, 202
EcoRII CCWGG 3 cut(s) 397, 856, 938
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 255, 711
EcoT38I GRGCYC 3 cut(s) 106, 204, 444
ErhI CCWWGG 2 cut(s) 255, 711
FaeI CATG 5 cut(s) 124, 259, 364, 496, 715
FatI CATG 5 cut(s) 120, 255, 360, 492, 711
FauI CCCGC 1 cut(s) 1042
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 8 cut(s) 303, 462, 738, 990, 993, 996, 999, 1002
FokI GGATG 3 cut(s) 58, 76, 487
FriOI GRGCYC 3 cut(s) 106, 204, 444
Fsp4HI GCNGC 8 cut(s) 303, 462, 738, 990, 993, 996, 999, 1002
FspBI CTAG 1 cut(s) 426
GluI GCNGC 8 cut(s) 303, 462, 738, 990, 993, 996, 999, 1002
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 2 cut(s) 691, 938
HapII CCGG 1 cut(s) 687
Hin1II CATG 5 cut(s) 124, 259, 364, 496, 715
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 2 cut(s) 80, 1040
HinfI GANTC 2 cut(s) 314, 523
HpaII CCGG 1 cut(s) 687
Hpy166II GTNNAC 3 cut(s) 184, 262, 724
Hpy188I TCNGA 1 cut(s) 446
Hpy188III TCNNGA 4 cut(s) 512, 566, 846, 984
Hpy8I GTNNAC 3 cut(s) 184, 262, 724
HpyAV CCTTC 5 cut(s) 85, 513, 565, 949, 953
HpyCH4III ACNGT 3 cut(s) 211, 645, 760
HpyCH4IV ACGT 3 cut(s) 228, 864, 882
HpyCH4V TGCA 6 cut(s) 374, 500, 659, 665, 995, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 458, 542, 995, 998, 1001
HpyF3I CTNAG 3 cut(s) 141, 614, 1026
HpySE526I ACGT 3 cut(s) 228, 864, 882
Hsp92II CATG 5 cut(s) 124, 259, 364, 496, 715
Kzo9I GATC 3 cut(s) 562, 669, 840
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 3 cut(s) 101, 542, 986
Lsp1109I GCAGC 7 cut(s) 448, 724, 976, 979, 985, 988, 1007
LweI GCATC 2 cut(s) 80, 509
MaeI CTAG 1 cut(s) 426
MaeII ACGT 3 cut(s) 228, 864, 882
MaeIII GTNAC 7 cut(s) 229, 487, 528, 760, 776, 860, 910
MalI GATC 3 cut(s) 564, 671, 842
MbiI CCGCTC 2 cut(s) 545, 832
MboI GATC 3 cut(s) 562, 669, 840
MboII GAAGA 5 cut(s) 26, 41, 98, 415, 1032
MflI RGATCY 2 cut(s) 562, 669
MhlI GDGCHC 3 cut(s) 106, 204, 444
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 5 cut(s) 348, 447, 606, 625, 652
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 1 cut(s) 323
Mox20I TGGCCA 1 cut(s) 938
MscI TGGCCA 1 cut(s) 938
MseI TTAA 3 cut(s) 389, 885, 1065
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 4 cut(s) 399, 688, 858, 940
MvaI CCWGG 3 cut(s) 399, 858, 940
MwoI GCNNNNNNNGC 6 cut(s) 299, 458, 542, 995, 998, 1001
NciI CCSGG 1 cut(s) 688
NcoI CCATGG 2 cut(s) 255, 711
NdeII GATC 3 cut(s) 562, 669, 840
NlaIII CATG 5 cut(s) 124, 259, 364, 496, 715
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 523
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 8 cut(s) 304, 463, 739, 991, 994, 997, 1000, 1003
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 865
PshBI ATTAAT 1 cut(s) 389
Psp124BI GAGCTC 2 cut(s) 106, 204
Psp6I CCWGG 3 cut(s) 397, 856, 938
PspGI CCWGG 3 cut(s) 397, 856, 938
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 689
PspXI VCTCGAGB 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 739, 771
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 3 cut(s) 770, 989, 1001
PsuI RGATCY 2 cut(s) 562, 669
PsyI GACNNNGTC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 1 cut(s) 757
RsaNI GTAC 1 cut(s) 756
SacI GAGCTC 2 cut(s) 106, 204
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 389, 885, 1065
SatI GCNGC 8 cut(s) 303, 462, 738, 990, 993, 996, 999, 1002
Sau3AI GATC 3 cut(s) 562, 669, 840
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 4 cut(s) 399, 688, 858, 940
SduI GDGCHC 3 cut(s) 106, 204, 444
SfaNI GCATC 2 cut(s) 80, 509
SfcI CTRYAG 2 cut(s) 355, 993
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 5 cut(s) 348, 447, 606, 625, 652
SsiI CCGC 7 cut(s) 23, 145, 279, 302, 545, 832, 1049
SspI AATATT 2 cut(s) 217, 298
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 2 cut(s) 106, 204
StyD4I CCNGG 4 cut(s) 397, 686, 856, 938
StyI CCWWGG 2 cut(s) 255, 711
TaaI ACNGT 3 cut(s) 211, 645, 760
TaiI ACGT 3 cut(s) 231, 867, 885
TaqI TCGA 2 cut(s) 204, 312
TasI AATT 5 cut(s) 348, 447, 606, 625, 652
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 3 cut(s) 389, 885, 1065
Tru9I TTAA 3 cut(s) 389, 885, 1065
TscAI CASTG 1 cut(s) 775
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 7 cut(s) 461, 737, 989, 992, 995, 998, 1001
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 5 cut(s) 618, 806, 912, 936, 969
TspRI CASTG 1 cut(s) 775
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 428
VspI ATTAAT 1 cut(s) 389
XapI RAATTY 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.