Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003261

Physical Location & Seq

Genomic Coordinates Forward (+)

2701793 .. 2709835

Gene Structure 8043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTATATTATCAGCTCCTCTGCTTCTTTCTCTCCCTCATCCCTTTTCATTTCCCTCCAAACGCCACCGTTTCGGAACCTTCAAGGTTTCCAGCTCCATCTTGTCCACTAATGGAGCTCTGCTCAGAAGACAATTCACCCAGCGATACCCTCTCGTGTTTGCCAAAGCCTCCTCTGTTTACGCCACCAGAGAAGACCTCGACACTGTCAATATCGCTGAGGACGTAACCCAGTTGATTGGAAGTACACCAATGGTATACCTCAACAAAGTTACCGGAAGTTGTGTGGCAAATATTGCAGCAAAGCTTGAATCTATGGAACCGTGCCGAAGTGTCAAGGATAGAATTGGATGTAGCATGATAGCTAATGCTGAGAAAAGTGGATTAATATCTCCTGGAAAGAGTGTATTAGTTGAACCAACTAGTGGAAATACAGGACTTGGTATTGCTTTTGTTGCTGCAACTAAAGGGTATAAACTTATAGTCACCATGCCTGCATCCATAAATCTCGAAAGGAGGATTCTTTTACGTGCATTTGGGGCAGAGGTTGTTTTGACAGATCCAGAAAAGGGTTTGAAAGGAGCTTTAGATAAAGCTGGAGAGATTGTTCTGAGAACACCAAATTCATATATGCTTCAACAGTTTGATAATGCCGCCAATGCAAAGATACATTTCGATACTACTGGGCCAGAAATATGGGAGGATACCATGGGCAGCGTTGACATATTTGTTGCTGCTATTGGAACTGGTGGTACTGTTACAGGCACTGGGCGTTACCTGAAAGCGATGAACAACGAGATAAAGGTAGTAGGTGTGGAACCTGCAGAGAGGAGTGTGATCTCTGGAGAAAATCCAGGTTATGTGCCAAGTATTTTGGATGTTAATTTGCTTGATGAGGTCATCAAGGTTACTAATGATGAAGCTGTTGAAATGGCAAGGAGACTAGCATTGGAGGAAGGTTTACTGGTTGGTATTTCATCAGGAGCTGCTGCAGCTGCTGCAATAAGTTTAGCAAGAAGGCCTGAAAATACTGGAAAACTAATCACGGTCATATTTCCAAGCTTTGGTGAGCGGTATATTCCCACTGTACTTTTCCAATCAATACATGAAGAGGTTCAGAAGATGCGAGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009987 GO:0010310 GO:0015979 GO:0016053 GO:0016740 GO:0016765 GO:0019222 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0031323 GO:0031977 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0065007 GO:0070279 GO:0071704 GO:0090322 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

379

Amino Acids

40.59

Weight (kDa)

8.32

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03630
fragaria_vesca	FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730 FvH4_1g29730
malus_domestica	MD12G1013800.v1.1 MD14G1011300.v1.1
prunus_persica	Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1 Prupe.7G018300_v2.0.a1
pyrus_communis	pycom12g01140 pycom14g01000
rosa_chinensis	RchiOBHm_Chr3g0495741
rosa_laevigata	RLG00000022591
rosa_multiflora	Rmu_sc0020877.1_g000001
rosa_roxburghii	Rroxscaffold_6G00390070
rosa_rugosa	Rorug03G0276000 Rorug03G0276100 Rorug03G0276200 Rorug03G0276300
rosa_samantha	Rh3BG359000 Rh3DG358900
rosa_wichuraiana	Rw3G028270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	829
AccB7I	CCANNNNNTGG	2 cut(s)	425, 1064
AccBSI	CCGCTC	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	2 cut(s)	654, 1072
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	3 cut(s)	247, 754, 1089
AfiI	CCNNNNNNNGG	3 cut(s)	425, 569, 1064
AgsI	TTSAA	6 cut(s)	85, 311, 416, 577, 638, 929
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	394, 853
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	934
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	3 cut(s)	767, 986, 998
AoxI	GGCC	2 cut(s)	686, 1019
ApeKI	GCWGC	9 cut(s)	299, 458, 714, 734, 986, 989, 992, 995, 998
ApoI	RAATTY	1 cut(s)	622
AseI	ATTAAT	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	3 cut(s)	130, 478, 1079
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	136, 201
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	9 cut(s)	311, 445, 721, 726, 973, 976, 982, 985, 1004
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	396, 855
BciVI	GTATCC	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	934
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	2 cut(s)	423, 944
BfmI	CTRYAG	2 cut(s)	822, 990
BfuAI	ACCTGC	1 cut(s)	829
BfuI	GTATCC	1 cut(s)	697
Bme1390I	CCNGG	2 cut(s)	396, 855
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	3 cut(s)	79, 321, 819
BmrFI	CCNGG	2 cut(s)	396, 855
BmrI	ACTGGG	3 cut(s)	226, 693, 777
BmsI	GCATC	2 cut(s)	506, 1113
BmuI	ACTGGG	3 cut(s)	226, 693, 777
BpiI	GAAGAC	2 cut(s)	136, 201
BplI	GAGNNNNNCTC	4 cut(s)	108, 140, 183, 215
BpmI	CTGGAG	2 cut(s)	618, 864
Bpu10I	CCTNAGC	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	425, 569, 1064
Bse1I	ACTGG	6 cut(s)	232, 688, 751, 772, 969, 1036
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	396, 855
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	4 cut(s)	40, 356, 497, 883
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	425, 569, 1064
BseMII	CTCAG	4 cut(s)	139, 210, 363, 602
BseNI	ACTGG	6 cut(s)	232, 688, 751, 772, 969, 1036
BseRI	GAGGAG	3 cut(s)	9, 163, 844
BseXI	GCAGC	9 cut(s)	311, 445, 721, 726, 973, 976, 982, 985, 1004
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	688, 1021
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	425, 569, 1064
BsmAI	GTCTC	1 cut(s)	934
BsnI	GGCC	2 cut(s)	688, 1021
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	559, 837
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	2 cut(s)	654, 1072
BspANI	GGCC	2 cut(s)	688, 1021
BspCNI	CTCAG	4 cut(s)	138, 211, 364, 603
BspLI	GGNNCC	3 cut(s)	79, 321, 819
BspMAI	CTGCAG	2 cut(s)	826, 994
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	1072
BsrI	ACTGG	6 cut(s)	232, 688, 751, 772, 969, 1036
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	2 cut(s)	559, 837
BssNAI	GTATAC	1 cut(s)	259
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	708
Bst1107I	GTATAC	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	396, 855
Bst4CI	ACNGT	7 cut(s)	71, 208, 324, 642, 757, 1048, 1087
Bst6I	CTCTTC	1 cut(s)	1104
BstAPI	GCANNNNNTGC	2 cut(s)	296, 998
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	125, 219, 372, 611
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	4 cut(s)	40, 356, 497, 883
BstKTI	GATC	2 cut(s)	562, 840
BstMAI	GTCTC	1 cut(s)	934
BstMBI	GATC	2 cut(s)	559, 837
BstMWI	GCNNNNNNNGC	7 cut(s)	296, 455, 539, 659, 992, 995, 998
BstNI	CCWGG	2 cut(s)	396, 855
BstSCI	CCNGG	2 cut(s)	394, 853
BstSFI	CTRYAG	2 cut(s)	822, 990
BstV1I	GCAGC	9 cut(s)	311, 445, 721, 726, 973, 976, 982, 985, 1004
BstV2I	GAAGAC	2 cut(s)	136, 201
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	2 cut(s)	239, 696
BstYI	RGATCY	1 cut(s)	559
BstZ17I	GTATAC	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	688, 1021
BtgI	CCRYGG	1 cut(s)	708
BtgZI	GCGATG	1 cut(s)	800
BtsCI	GGATG	4 cut(s)	40, 356, 497, 883
BtsIMutI	CAGTG	3 cut(s)	204, 765, 1083
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	1 cut(s)	495
CaiI	CAGNNNCTG	3 cut(s)	767, 986, 998
Cfr13I	GGNCC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	246, 753, 1088
CviAII	CATG	4 cut(s)	358, 490, 709, 1106
CviQI	GTAC	3 cut(s)	246, 753, 1088
DdeI	CTNAG	4 cut(s)	125, 219, 372, 611
DpnI	GATC	2 cut(s)	561, 839
DpnII	GATC	2 cut(s)	559, 837
Eam1104I	CTCTTC	1 cut(s)	1104
EarI	CTCTTC	1 cut(s)	1104
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	708
Eco147I	AGGCCT	1 cut(s)	1021
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	394, 853
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	4 cut(s)	361, 493, 712, 1109
FatI	CATG	4 cut(s)	357, 489, 708, 1105
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	4 cut(s)	27, 363, 484, 890
FriOI	GRGCYC	1 cut(s)	121
FspBI	CTAG	2 cut(s)	423, 944
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	2 cut(s)	618, 864
HaeIII	GGCC	2 cut(s)	688, 1021
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	4 cut(s)	361, 493, 712, 1109
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	2 cut(s)	305, 1060
HinfI	GANTC	2 cut(s)	311, 520
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	130, 478, 1079
Hpy166II	GTNNAC	6 cut(s)	108, 181, 248, 259, 721, 962
Hpy188I	TCNGA	4 cut(s)	77, 128, 612, 1119
Hpy188III	TCNNGA	4 cut(s)	509, 563, 843, 981
Hpy8I	GTNNAC	6 cut(s)	108, 181, 248, 259, 721, 962
HpyAV	CCTTC	3 cut(s)	91, 950, 1011
HpyCH4III	ACNGT	7 cut(s)	71, 208, 324, 642, 757, 1048, 1087
HpyCH4IV	ACGT	2 cut(s)	225, 529
HpyCH4V	TGCA	8 cut(s)	299, 461, 497, 533, 662, 824, 992, 1001
HpyF10VI	GCNNNNNNNGC	7 cut(s)	296, 455, 539, 659, 992, 995, 998
HpyF3I	CTNAG	4 cut(s)	125, 219, 372, 611
HpySE526I	ACGT	2 cut(s)	225, 529
Hsp92II	CATG	4 cut(s)	361, 493, 712, 1109
Kzo9I	GATC	2 cut(s)	559, 837
LmnI	GCTCC	5 cut(s)	22, 101, 116, 581, 983
Lsp1109I	GCAGC	9 cut(s)	311, 445, 721, 726, 973, 976, 982, 985, 1004
LweI	GCATC	2 cut(s)	506, 1113
MaeI	CTAG	2 cut(s)	423, 944
MaeII	ACGT	2 cut(s)	225, 529
MaeIII	GTNAC	6 cut(s)	226, 271, 484, 757, 773, 907
MalI	GATC	2 cut(s)	561, 839
MbiI	CCGCTC	1 cut(s)	1072
MboI	GATC	2 cut(s)	559, 837
MboII	GAAGA	4 cut(s)	141, 206, 1121, 1132
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	4 cut(s)	134, 345, 622, 883
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	2 cut(s)	386, 882
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	396, 855
MvaI	CCWGG	2 cut(s)	396, 855
MwoI	GCNNNNNNNGC	7 cut(s)	296, 455, 539, 659, 992, 995, 998
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	2 cut(s)	559, 837
NlaIII	CATG	4 cut(s)	361, 493, 712, 1109
NlaIV	GGNNCC	3 cut(s)	79, 321, 819
NmuCI	GTSAC	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	1021
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	2 cut(s)	311, 520
PflFI	GACNNNGTC	1 cut(s)	206
PflMI	CCANNNNNTGG	2 cut(s)	425, 1064
PfoI	TCCNGGA	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	394, 853
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	2 cut(s)	394, 853
PspN4I	GGNNCC	3 cut(s)	79, 321, 819
PspPI	GGNCC	1 cut(s)	686
PsrI	GAACNNNNNNTAC	2 cut(s)	736, 768
PstI	CTGCAG	2 cut(s)	826, 994
PstNI	CAGNNNCTG	3 cut(s)	767, 986, 998
PsuI	RGATCY	1 cut(s)	559
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	995
RsaI	GTAC	3 cut(s)	247, 754, 1089
RsaNI	GTAC	3 cut(s)	246, 753, 1088
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	386, 882
Sau3AI	GATC	2 cut(s)	559, 837
Sau96I	GGNCC	1 cut(s)	686
ScrFI	CCNGG	2 cut(s)	396, 855
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	506, 1113
SfcI	CTRYAG	2 cut(s)	822, 990
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	4 cut(s)	134, 345, 622, 883
SseBI	AGGCCT	1 cut(s)	1021
SsiI	CCGC	2 cut(s)	654, 1072
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	423, 944
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	1021
StyD4I	CCNGG	2 cut(s)	394, 853
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	7 cut(s)	71, 208, 324, 642, 757, 1048, 1087
TaiI	ACGT	2 cut(s)	228, 532
TaqI	TCGA	3 cut(s)	201, 510, 675
TasI	AATT	4 cut(s)	134, 345, 622, 883
TatI	WGTACW	2 cut(s)	245, 1087
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	311, 520
Tru1I	TTAA	2 cut(s)	386, 882
Tru9I	TTAA	2 cut(s)	386, 882
TscAI	CASTG	3 cut(s)	211, 772, 1090
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	9 cut(s)	299, 458, 714, 734, 986, 989, 992, 995, 998
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	6 cut(s)	39, 615, 803, 933, 966, 1122
TspRI	CASTG	3 cut(s)	211, 772, 1090
Tth111I	GACNNNGTC	1 cut(s)	206
Van91I	CCANNNNNTGG	2 cut(s)	425, 1064
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	2 cut(s)	423, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.