FvH4_1g29870

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004978
Physical Location & Seq
Forward (+)
23559465 .. 23561906
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29870.t5

Sequence Viewer

Length: 1020 bp
ATGAGGCTCTTCACATATCTTTTCTACTTGCACCTAGTCTTGATCTCCTTCTTGATAATCTTTCTGACAGCTTGCAGTCTTATTTCCACCAATCACAAGCACCATTTCCACCCACTAAAGTTCTATGCTCCACTCCTCTCTTCAACACTCTGCTCTGCAGTTGTCGCTTTGATATGGCAATGGATCATCAGGTTAAGCCCTTCTAAAGCTATTAAAACAGCCTTTTGGCTCAGCCATTTGCTGATCTGTGCAGTCGGTGTACTACTCATATACATAAGTTCTGCTGAGAGTTTGGCCGCAGGAGGGGTTGCAATCATCTGTGCACTCATTCAATCGCTTTATGCCTGCTGGGTCAGTCCCCGTATCGAATTCGCCATGAGGATATTATCAGTTTCTACAGCTGTCCCTCCGAAATTCACAGCATTACTCGTTCAATCAATTTTCACCTGTATCCTCTACCTCTCTTTCTTGGTATCCGGCATCGGAGGAGCCACTGCCCTAAGTAGCAGTTTCAGTGTCTTGTTTATCTCAATTATCTTGCTAAGCATGGCATGGACTATGCATGTCATTAAGAACCTGCTGCAAGTCACAGTTTCACGCATCAAGTACATGCACTTTGCGTGCGGAGCAGATGTTGATACAAATGAGGCTTTCTGCAACACACTTAAACATTCAATGGGGAGTATCTGCATTGGCTCCATCTTGGTTCCAGTTCTGGGGGTTATTCGGGGCTCAGCCAGAGGCATGAAATCGGTTGCAGGGGATACAGACGAGTTTCTCTTTTCCTGTGCCAACTGCTATTCAGGACTGGCTGCAACTCTGGTAATGTATGGAAATCGCTGGGGTTTTGTGCATGTTGGGGTATATAACAAGGGGTTTGTGCAGGCATCAGCTGGTACATGGGAGATGTTCAGGAATATAGAACTACAAGAAATAATCGACTTAGATCTCACATCGTCGTTCTGTTTTCTTTCTGGGGTGGCAGGAGGTGCAATATGTAGCCTGGTCAGTGGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

340

Amino Acids

36.85

Weight (kDa)

8.67

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 103 - 338 4.3e-23 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 585
AciI CCGC 2 cut(s) 297, 624
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 368, 413
AfaI GTAC 3 cut(s) 261, 608, 898
AfiI CCNNNNNNNGG 2 cut(s) 303, 716
AgsI TTSAA 4 cut(s) 144, 332, 434, 675
AjnI CCWGG 1 cut(s) 1002
AluBI AGCT 4 cut(s) 71, 209, 401, 893
AluI AGCT 4 cut(s) 71, 209, 401, 893
Alw21I GWGCWC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 294
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 580, 812
ApoI RAATTY 2 cut(s) 368, 413
AsuHPI GGTGA 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 567, 799
BccI CCATC 1 cut(s) 707
BciT130I CCWGG 1 cut(s) 1004
BciVI GTATCC 3 cut(s) 461, 484, 757
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 156, 396
BfuAI ACCTGC 1 cut(s) 585
BfuI GTATCC 3 cut(s) 461, 484, 757
BglII AGATCT 1 cut(s) 946
BisI GCNGC 3 cut(s) 297, 581, 813
BlpI GCTNAGC 3 cut(s) 230, 542, 733
BlsI GCNGC 3 cut(s) 298, 582, 814
Bme1390I CCNGG 1 cut(s) 1004
BmiI GGNNCC 3 cut(s) 490, 697, 708
BmrFI CCNGG 1 cut(s) 1004
BmsI GCATC 3 cut(s) 489, 609, 896
Bpu1102I GCTNAGC 3 cut(s) 230, 542, 733
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 716
Bse1I ACTGG 2 cut(s) 710, 813
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 1004
BseLI CCNNNNNNNGG 2 cut(s) 303, 716
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 3 cut(s) 244, 276, 747
BseNI ACTGG 2 cut(s) 710, 813
BseRI GAGGAG 2 cut(s) 125, 501
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 2 cut(s) 567, 799
BseYI CCCAGC 2 cut(s) 348, 840
BsgI GTGCAG 2 cut(s) 270, 902
BshFI GGCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 477
BslFI GGGAC 2 cut(s) 342, 389
BslI CCNNNNNNNGG 2 cut(s) 303, 716
BsmFI GGGAC 2 cut(s) 342, 389
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 325, 734
Bsp143I GATC 4 cut(s) 42, 183, 243, 946
Bsp1720I GCTNAGC 3 cut(s) 230, 542, 733
BspACI CCGC 2 cut(s) 297, 624
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 3 cut(s) 243, 277, 746
BspLI GGNNCC 3 cut(s) 490, 697, 708
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 710, 813
BssMI GATC 4 cut(s) 42, 183, 243, 946
Bst2UI CCWGG 1 cut(s) 1004
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 2 cut(s) 14, 145
BstAPI GCANNNNNTGC 1 cut(s) 989
BstC8I GCNNGC 4 cut(s) 73, 346, 622, 885
BstDEI CTNAG 7 cut(s) 230, 285, 500, 542, 733, 943, 1017
BstKTI GATC 4 cut(s) 45, 186, 246, 949
BstMBI GATC 4 cut(s) 42, 183, 243, 946
BstMWI GCNNNNNNNGC 3 cut(s) 164, 626, 989
BstNI CCWGG 1 cut(s) 1004
BstNSI RCATGY 3 cut(s) 566, 613, 857
BstSCI CCNGG 1 cut(s) 1002
BstSFI CTRYAG 2 cut(s) 156, 396
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 567, 799
BstX2I RGATCY 1 cut(s) 946
BstYI RGATCY 1 cut(s) 946
BsuI GTATCC 3 cut(s) 461, 484, 757
BsuRI GGCC 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 3 cut(s) 492, 520, 1015
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 4 cut(s) 73, 346, 622, 885
Csp6I GTAC 3 cut(s) 260, 607, 897
CviAII CATG 8 cut(s) 376, 547, 552, 563, 610, 745, 854, 900
CviQI GTAC 3 cut(s) 260, 607, 897
DdeI CTNAG 7 cut(s) 230, 285, 500, 542, 733, 943, 1017
DpnI GATC 4 cut(s) 44, 185, 245, 948
DpnII GATC 4 cut(s) 42, 183, 243, 946
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 14, 145
EarI CTCTTC 2 cut(s) 14, 145
Eco24I GRGCYC 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 1002
EcoT22I ATGCAT 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 734
FaeI CATG 8 cut(s) 379, 550, 555, 566, 613, 748, 857, 903
FaqI GGGAC 2 cut(s) 342, 389
FatI CATG 8 cut(s) 375, 546, 551, 562, 609, 744, 853, 899
Fnu4HI GCNGC 3 cut(s) 297, 581, 813
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 3 cut(s) 297, 581, 813
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 297, 581, 813
GsaI CCCAGC 2 cut(s) 352, 844
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 477
Hin1II CATG 8 cut(s) 379, 550, 555, 566, 613, 748, 857, 903
HpaII CCGG 1 cut(s) 477
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 2 cut(s) 260, 323
Hpy188I TCNGA 3 cut(s) 66, 411, 485
Hpy188III TCNNGA 4 cut(s) 40, 52, 804, 913
Hpy8I GTNNAC 2 cut(s) 260, 323
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 2 cut(s) 58, 210
HpyCH4III ACNGT 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 626, 989
HpyF3I CTNAG 7 cut(s) 230, 285, 500, 542, 733, 943, 1017
Hsp92II CATG 8 cut(s) 379, 550, 555, 566, 613, 748, 857, 903
Kzo9I GATC 4 cut(s) 42, 183, 243, 946
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 4 cut(s) 133, 488, 626, 701
Lsp1109I GCAGC 2 cut(s) 567, 799
LweI GCATC 3 cut(s) 489, 609, 896
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 586
MalI GATC 4 cut(s) 44, 185, 245, 948
MboI GATC 4 cut(s) 42, 183, 243, 946
MboII GAAGA 1 cut(s) 132
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 2 cut(s) 325, 734
MluCI AATT 4 cut(s) 368, 413, 438, 531
Mph1103I ATGCAT 1 cut(s) 564
MseI TTAA 4 cut(s) 194, 213, 570, 666
MspA1I CMGCKG 2 cut(s) 401, 893
MspI CCGG 1 cut(s) 477
MspR9I CCNGG 1 cut(s) 1004
MvaI CCWGG 1 cut(s) 1004
MwoI GCNNNNNNNGC 3 cut(s) 164, 626, 989
NdeII GATC 4 cut(s) 42, 183, 243, 946
NlaIII CATG 8 cut(s) 379, 550, 555, 566, 613, 748, 857, 903
NlaIV GGNNCC 3 cut(s) 490, 697, 708
NmuCI GTSAC 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 3 cut(s) 566, 613, 857
PciSI GCTCTTC 1 cut(s) 14
PkrI GCNGC 3 cut(s) 298, 582, 814
Psp6I CCWGG 1 cut(s) 1002
PspFI CCCAGC 2 cut(s) 348, 840
PspGI CCWGG 1 cut(s) 1002
PspN4I GGNNCC 3 cut(s) 490, 697, 708
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 946
PvuII CAGCTG 2 cut(s) 401, 893
RsaI GTAC 3 cut(s) 261, 608, 898
RsaNI GTAC 3 cut(s) 260, 607, 897
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 4 cut(s) 194, 213, 570, 666
SatI GCNGC 3 cut(s) 297, 581, 813
Sau3AI GATC 4 cut(s) 42, 183, 243, 946
ScrFI CCNGG 1 cut(s) 1004
SduI GDGCHC 2 cut(s) 325, 734
SfaNI GCATC 3 cut(s) 489, 609, 896
SfcI CTRYAG 2 cut(s) 156, 396
Sse9I AATT 4 cut(s) 368, 413, 438, 531
SsiI CCGC 2 cut(s) 297, 624
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 1002
TaaI ACNGT 1 cut(s) 592
TaqI TCGA 2 cut(s) 366, 939
TasI AATT 4 cut(s) 368, 413, 438, 531
TatI WGTACW 2 cut(s) 259, 606
TauI GCSGC 1 cut(s) 299
Tru1I TTAA 4 cut(s) 194, 213, 570, 666
Tru9I TTAA 4 cut(s) 194, 213, 570, 666
TscAI CASTG 3 cut(s) 499, 520, 1015
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 580, 812
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 1 cut(s) 761
TspRI CASTG 3 cut(s) 499, 520, 1015
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 2 cut(s) 368, 413
XceI RCATGY 3 cut(s) 566, 613, 857
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.