Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000607.1

Orthogroup ID

OG0004978

Physical Location & Seq

Genomic Coordinates Reverse (-)

265015 .. 266340

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000607.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgaggctcgtaacatttcttttctccttgcacctagtcttgatcgccttcttggtaatctttctgacagtttacggtctcatttccaccaatcacaagcaccatttccacccactacagttctatgctccactgctcacttcaacactctgctctgcaattgtcgctttaatatggcaatgggtcaccaggttaagcccttcgaaagccattaaaacagccttttggctcagccccttgctaacctgcgcagttggtgtacttctcatatctataagttctgctgggagtttggttgcaggtggggttgcaatcatctgtgcgctcattcaatcgctgtatgcctgctgggtcagtccccgtatcgaatttgccatcaggatattatctgtttctacagctgtccctcctcccaaaatcacaacattactcattctatcaatttttacctgtatcctctacctctctttcttggtatccggcatcggaggagccactgccataagaagcagctttagtgtcctgcttatctcggttatcttgctgagcatggcatggactatgcatctcatcaagaacctgctgcaagtcacaatttcacgcatcaagtacatgcactttgcatgcggagaagatgttgacacaagtgaggctttctgcaacacacttaagcactcaatggggagtatctgcattggctccatcttggttccagttctcggagttattcggggatcagccagaggcatgaaattggttgcaggggatacagacgagtttctattttcatgcgccaactgctattcgggactggcttcaactctggtgatgtatgggaatcgctggggttttgtgcatgttggagtctataacaagggctttgtgcaggcatcagctgatacatgggagatgttcaggaatatagaactaagagaaataatcgacttagatctcactacatcgttctgttttctttctggggtggtcggaggtgcaatatgtagcctagtcagtggaacttggactcttgcaattcataagagttatgctactgaagtctccttatatgcattcttgattggctatttcatgtgcaggattgctgtggcatggccacaagcatgtgttttgtcttactacgtagcttatgcagagaaccctaatagcacgcgatttgactcaacacttcctgttcgcattgaagagcttcggagatttcaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

408

Amino Acids

44.79

Weight (kDa)

8.72

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03700 AT3G04440 AT3G04440
fragaria_vesca	FvH4_1g29870 FvH4_1g29870 FvH4_1g29870 FvH4_1g29870 FvH4_1g29870 FvH4_1g29870 FvH4_1g29870 FvH4_1g29870
malus_domestica	MD12G1012000.v1.1 MD14G1009600.v1.1
prunus_persica	Prupe.7G015900_v2.0.a1 Prupe.7G015900_v2.0.a1
pyrus_communis	pycom12g00930 pycom14g00810
rosa_chinensis	RchiOBHm_Chr3g0496021
rosa_laevigata	RLG00000022572
rosa_multiflora	Rmu_sc0000607.1_g000056 Rmu_sc0005781.1_g000029
rosa_roxburghii	Rroxscaffold_6G00389650
rosa_rugosa	Rorug03G0279000 Rorug03G0279100 Rorug03G0279100
rosa_samantha	Rh3AG325800 Rh3BG362200 Rh3CG358200 Rh3DG361600
rosa_wichuraiana	Rw3G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc16I	TGCGCA	1 cut(s)	250
Acc36I	ACCTGC	3 cut(s)	254, 290, 588
AccII	CGCG	1 cut(s)	1171
AciI	CCGC	1 cut(s)	627
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	1 cut(s)	1112
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	1074
AfaI	GTAC	2 cut(s)	261, 611
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	144, 332, 819, 1202, 1220
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	6 cut(s)	401, 513, 896, 1145, 1207, 1223
AluI	AGCT	6 cut(s)	401, 513, 896, 1145, 1207, 1223
Alw26I	GTCTC	2 cut(s)	83, 1063
AlwI	GGATC	1 cut(s)	742
AoxI	GGCC	1 cut(s)	1112
ApeKI	GCWGC	2 cut(s)	510, 583
ApoI	RAATTY	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	1206
AspLEI	GCGC	3 cut(s)	251, 325, 794
AsuHPI	GGTGA	2 cut(s)	178, 838
AsuII	TTCGAA	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	1114
BbvI	GCAGC	2 cut(s)	522, 570
BccI	CCATC	2 cut(s)	383, 710
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	3 cut(s)	464, 487, 760
BcoDI	GTCTC	2 cut(s)	83, 1063
BfaI	CTAG	2 cut(s)	35, 1007
BfmI	CTRYAG	2 cut(s)	116, 396
BfrI	CTTAAG	1 cut(s)	668
BfuAI	ACCTGC	3 cut(s)	254, 290, 588
BfuI	GTATCC	3 cut(s)	464, 487, 760
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	2 cut(s)	511, 584
BlpI	GCTNAGC	2 cut(s)	230, 545
BlsI	GCNGC	2 cut(s)	512, 585
Bme1390I	CCNGG	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	493, 700, 711
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	4 cut(s)	492, 574, 612, 899
Bpu1102I	GCTNAGC	2 cut(s)	230, 545
Bpu14I	TTCGAA	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	2 cut(s)	713, 816
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	244, 536
BseNI	ACTGG	2 cut(s)	713, 816
BseRI	GAGGAG	2 cut(s)	399, 504
BseXI	GCAGC	2 cut(s)	522, 570
BseYI	CCCAGC	3 cut(s)	284, 348, 843
BsgI	GTGCAG	2 cut(s)	905, 1114
Bsh1236I	CGCG	1 cut(s)	1171
BshFI	GGCC	1 cut(s)	1114
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	3 cut(s)	342, 389, 822
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	2 cut(s)	83, 1063
BsmFI	GGGAC	3 cut(s)	342, 389, 822
BsmI	GAATGC	1 cut(s)	1070
BsnI	GGCC	1 cut(s)	1114
Bso31I	GGTCTC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	42, 734, 949
Bsp1720I	GCTNAGC	2 cut(s)	230, 545
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	1 cut(s)	1114
BspCNI	CTCAG	2 cut(s)	243, 537
BspFNI	CGCG	1 cut(s)	1171
BspLI	GGNNCC	3 cut(s)	493, 700, 711
BspMI	ACCTGC	3 cut(s)	254, 290, 588
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	1197
BspT104I	TTCGAA	1 cut(s)	203
BspTI	CTTAAG	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	713, 816
BssMI	GATC	3 cut(s)	42, 734, 949
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	70, 77, 120
Bst6I	CTCTTC	1 cut(s)	1197
BstAFI	CTTAAG	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	1141
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	4 cut(s)	346, 625, 888, 1169
BstDEI	CTNAG	4 cut(s)	230, 545, 929, 946
BstEII	GGTNACC	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	1171
BstHHI	GCGC	3 cut(s)	251, 325, 794
BstKTI	GATC	3 cut(s)	45, 737, 952
BstMAI	GTCTC	2 cut(s)	83, 1063
BstMBI	GATC	3 cut(s)	42, 734, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 798
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	4 cut(s)	616, 627, 860, 1125
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	116, 396
BstSNI	TACGTA	1 cut(s)	1141
BstUI	CGCG	1 cut(s)	1171
BstV1I	GCAGC	2 cut(s)	522, 570
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuI	GTATCC	3 cut(s)	464, 487, 760
BsuRI	GGCC	1 cut(s)	1114
BtsI	GCAGTG	2 cut(s)	131, 495
BtsIMutI	CAGTG	3 cut(s)	131, 495, 1018
BveI	ACCTGC	3 cut(s)	254, 290, 588
Cac8I	GCNNGC	4 cut(s)	346, 625, 888, 1169
CfoI	GCGC	3 cut(s)	251, 325, 794
CsiI	ACCWGGT	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	260, 610
CviQI	GTAC	2 cut(s)	260, 610
DdeI	CTNAG	4 cut(s)	230, 545, 929, 946
DpnI	GATC	3 cut(s)	44, 736, 951
DpnII	GATC	3 cut(s)	42, 734, 949
EaeI	YGGCCR	1 cut(s)	1112
Eam1104I	CTCTTC	1 cut(s)	1197
EarI	CTCTTC	1 cut(s)	1197
Eco105I	TACGTA	1 cut(s)	1141
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	1074
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	188
EcoT22I	ATGCAT	2 cut(s)	567, 1072
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FaqI	GGGAC	3 cut(s)	342, 389, 822
Fnu4HI	GCNGC	2 cut(s)	511, 584
Fsp4HI	GCNGC	2 cut(s)	511, 584
FspBI	CTAG	2 cut(s)	35, 1007
FspI	TGCGCA	1 cut(s)	250
GlaI	GCGC	3 cut(s)	250, 324, 793
GluI	GCNGC	2 cut(s)	511, 584
GsaI	CCCAGC	3 cut(s)	288, 352, 847
HaeIII	GGCC	1 cut(s)	1114
HapII	CCGG	1 cut(s)	480
HhaI	GCGC	3 cut(s)	251, 325, 794
Hin6I	GCGC	3 cut(s)	249, 323, 792
HinP1I	GCGC	3 cut(s)	249, 323, 792
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	1221
HinfI	GANTC	4 cut(s)	838, 864, 1024, 1178
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	2 cut(s)	178, 838
Hpy166II	GTNNAC	3 cut(s)	73, 260, 640
Hpy188I	TCNGA	5 cut(s)	66, 488, 722, 989, 1212
Hpy188III	TCNNGA	6 cut(s)	40, 379, 574, 807, 916, 1075
Hpy8I	GTNNAC	3 cut(s)	73, 260, 640
HpyAV	CCTTC	2 cut(s)	58, 210
HpyCH4III	ACNGT	3 cut(s)	70, 77, 120
HpyCH4IV	ACGT	1 cut(s)	1140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 798
HpyF3I	CTNAG	4 cut(s)	230, 545, 929, 946
HpySE526I	ACGT	1 cut(s)	1140
HspAI	GCGC	3 cut(s)	249, 323, 792
Kzo9I	GATC	3 cut(s)	42, 734, 949
LguI	GCTCTTC	1 cut(s)	1197
LmnI	GCTCC	3 cut(s)	133, 491, 704
Lsp1109I	GCAGC	2 cut(s)	522, 570
LweI	GCATC	4 cut(s)	492, 574, 612, 899
MabI	ACCWGGT	1 cut(s)	188
MaeI	CTAG	2 cut(s)	35, 1007
MaeII	ACGT	1 cut(s)	1140
MaeIII	GTNAC	3 cut(s)	10, 184, 589
MalI	GATC	3 cut(s)	44, 736, 951
MboI	GATC	3 cut(s)	42, 734, 949
MboII	GAAGA	2 cut(s)	644, 1214
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	949
MlsI	TGGCCA	1 cut(s)	1114
MluCI	AATT	6 cut(s)	159, 368, 441, 594, 752, 1032
MluNI	TGGCCA	1 cut(s)	1114
MlyI	GAGTC	3 cut(s)	873, 1018, 1172
MmeI	TCCRAC	2 cut(s)	841, 967
MnlI	CCTC	8 cut(s)	417, 420, 467, 473, 482, 643, 737, 983
Mox20I	TGGCCA	1 cut(s)	1114
Mph1103I	ATGCAT	2 cut(s)	567, 1072
MroXI	GAANNNNTTC	1 cut(s)	1206
MscI	TGGCCA	1 cut(s)	1114
MseI	TTAA	5 cut(s)	170, 194, 213, 669, 1225
MslI	CAYNNNNRTG	1 cut(s)	1120
Msp20I	TGGCCA	1 cut(s)	1114
MspA1I	CMGCKG	2 cut(s)	401, 896
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	1070
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	1171
MwoI	GCNNNNNNNGC	2 cut(s)	164, 798
NdeII	GATC	3 cut(s)	42, 734, 949
NlaIV	GGNNCC	3 cut(s)	493, 700, 711
NmuCI	GTSAC	2 cut(s)	184, 589
NsbI	TGCGCA	1 cut(s)	250
NsiI	ATGCAT	2 cut(s)	567, 1072
NspI	RCATGY	4 cut(s)	616, 627, 860, 1125
NspV	TTCGAA	1 cut(s)	203
PaeI	GCATGC	1 cut(s)	627
PaqCI	CACCTGC	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	1197
PctI	GAATGC	1 cut(s)	1070
PdmI	GAANNNNTTC	1 cut(s)	1206
PfeI	GAWTC	1 cut(s)	838
PkrI	GCNGC	2 cut(s)	512, 585
PleI	GAGTC	3 cut(s)	872, 1018, 1172
PpsI	GAGTC	3 cut(s)	872, 1018, 1172
Ppu21I	YACGTR	1 cut(s)	1141
Psp6I	CCWGG	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	184
PspFI	CCCAGC	3 cut(s)	284, 348, 843
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	3 cut(s)	493, 700, 711
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	2 cut(s)	401, 896
RsaI	GTAC	2 cut(s)	261, 611
RsaNI	GTAC	2 cut(s)	260, 610
RseI	CAYNNNNRTG	1 cut(s)	1120
SapI	GCTCTTC	1 cut(s)	1197
SaqAI	TTAA	5 cut(s)	170, 194, 213, 669, 1225
SatI	GCNGC	2 cut(s)	511, 584
Sau3AI	GATC	3 cut(s)	42, 734, 949
SchI	GAGTC	3 cut(s)	873, 1018, 1172
ScrFI	CCNGG	1 cut(s)	190
SexAI	ACCWGGT	1 cut(s)	188
SfaNI	GCATC	4 cut(s)	492, 574, 612, 899
SfcI	CTRYAG	2 cut(s)	116, 396
SfuI	TTCGAA	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	1120
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SnaBI	TACGTA	1 cut(s)	1141
SphI	GCATGC	1 cut(s)	627
Sse9I	AATT	6 cut(s)	159, 368, 441, 594, 752, 1032
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	2 cut(s)	35, 1007
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	70, 77, 120
TaiI	ACGT	1 cut(s)	1143
TaqI	TCGA	3 cut(s)	203, 366, 942
TasI	AATT	6 cut(s)	159, 368, 441, 594, 752, 1032
TatI	WGTACW	2 cut(s)	259, 609
TfiI	GAWTC	1 cut(s)	838
Tru1I	TTAA	5 cut(s)	170, 194, 213, 669, 1225
Tru9I	TTAA	5 cut(s)	170, 194, 213, 669, 1225
TscAI	CASTG	3 cut(s)	138, 502, 1018
TseFI	GTSAC	2 cut(s)	184, 589
TseI	GCWGC	2 cut(s)	510, 583
Tsp45I	GTSAC	2 cut(s)	184, 589
TspDTI	ATGAA	4 cut(s)	764, 777, 1025, 1078
TspRI	CASTG	3 cut(s)	138, 502, 1018
Vha464I	CTTAAG	1 cut(s)	668
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	4 cut(s)	616, 627, 860, 1125
XmnI	GAANNNNTTC	1 cut(s)	1206
XspI	CTAG	2 cut(s)	35, 1007
Zsp2I	ATGCAT	2 cut(s)	567, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.