Prupe.7G015900_v2.0.a1

Belongs to the CTL (choline transporter-like) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
2280042 .. 2282477
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G015900.2

Sequence Viewer

Length: 1506 bp
ATGCACAGTGTATATATCATTTTTTTAATTCGGACCTGGGAAATTTCCATCCATCTCATTTTGTTGAATCTTGGAGGCAAAGGAACTTGTAGAAATTCAAGATATATATATATTAAACAACAAGGTCAAATGATGGAACTTCATTCAACCAGTGCAACTTCAAAGAACATCCAAAGAGAAGTTCAAGAAGAAGAAGATAGGCCTTCATTCACCAACCACATCAAGGCACAAGAGCCTAGCATCATTCCAACTGAGACAGCCACGGCTGGGAAATTCCTCAGGAGGCTCTTTACAATTCTTTTTTACTTGCACTTGATCCTCATTGCCATCTTCGTCGTCTTCCTTACACTGTATGGCCTCATCTCCACCTCTCGCAATCACCATTTTCAACCCCTCAAGTTTTATCCTCCATTGCTCACTTCAACAGCCTGCTCTGCAATTGTTGCTTTCATATGGCAATGGGTCACTGGCTCAAGCCCTTCTAAAGCTATCAAGGCTGCCTTTTGGCTTAGCCCTTTGTTAACCTGCGCAGTCGGTGTACTGCTTGTATCTGTAGGTTCTGCTCAAAGTTTGGCCGCAGGCGTGGTTGCAGTCATTTGTGCCCTCATTCAATCCCTGTATGCCTGTTGGGTCAGTCCCCGTTTTGAATATGCCATCCGGATTTTATCAGTTTCCACTGCTTTCCCTCCTGCTAAAACTACCATGTTAGTCCTTCAGTCAATTTCCATCAGCATTCTTTACTCATGTTTCTTGGTGTCTGGCATTGGAAGAGCCACTGCCACCAGAAGTAGTTTGAATGTGCTGTTCCACTCAGTAATCTTGCTGAGCATGGCATGGACTATGCAAGTAATCAAGAACATACTTCTTGTTACTGTCTCACGCATCAAGTACATGCACTTTGCATGGGGAACAGATATTGACACACCTAAGGCTTTCCGCGACACACTTAAGCACTTGATGGGGAGTATCTGCATTGGCTCCATCTTGGTTCCAGTTCTCGGGGTTATTCGGGGCTCTGCCCGAGGCATGAAATTGGTTGCAGGGGATACCGACGAGTTTCTGTTTTCATGTGCCAACTGTTATGCAGGAATGGCTTCAACGCTGGTAATGTATGGGAACCGGTGGGGTTTTGTGCATGTCGGGGCGTATGATAAGGGCTTCGTGCAGGCATCATCAGATACTTGGGAGATGTTCAGGAGTGCAGGATTAAAAGAATTAATCGACTTGGATCTCACAGGATCATTCTGCTTTCTTTCTGGGGTGGCAGCAGGTGCAATATGCAGCCTAGCGAGTGGAACTTGGGCTCTTGCGATTCATAAGAGCTATGCTGCAGAAGTTTCAATCTATGCATTCTTCATCGGCTATTTCATGTGTAGGATTGCTATGGCATGGCCCCAAGCATGTGTTTCGTCTTACTATGTGGCTTATGCAGAAAATCCAGAGAGCGTTCGCTTTGACTCGACCATCCCCGTTCGCCTTGATGAGCTCCAGAGATTTCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

55.38

Weight (kDa)

9.02

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1259
Acc16I TGCGCA 1 cut(s) 529
Acc36I ACCTGC 2 cut(s) 533, 1259
AccII CGCG 1 cut(s) 939
AccIII TCCGGA 1 cut(s) 657
AciI CCGC 2 cut(s) 576, 937
AclWI GGATC 3 cut(s) 310, 1236, 1246
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 3 cut(s) 42, 94, 272
AcuI CTGAAG 1 cut(s) 698
AfaI GTAC 2 cut(s) 540, 890
AfiI CCNNNNNNNGG 3 cut(s) 223, 267, 998
AflII CTTAAG 1 cut(s) 947
AgeI ACCGGT 1 cut(s) 1119
AjnI CCWGG 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 3 cut(s) 488, 1323, 1486
AluI AGCT 3 cut(s) 488, 1323, 1486
Alw21I GWGCWC 1 cut(s) 1488
Alw26I GTCTC 2 cut(s) 248, 880
AlwI GGATC 3 cut(s) 310, 1236, 1246
Ama87I CYCGRG 2 cut(s) 998, 1020
Aor13HI TCCGGA 1 cut(s) 657
AoxI GGCC 4 cut(s) 200, 355, 573, 1391
ApeKI GCWGC 4 cut(s) 497, 1265, 1281, 1328
ApoI RAATTY 3 cut(s) 42, 94, 272
AseI ATTAAT 1 cut(s) 1217
AsiGI ACCGGT 1 cut(s) 1119
Asp700I GAANNNNTTC 1 cut(s) 1093
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 33, 1392
AsuHPI GGTGA 2 cut(s) 202, 371
AvaI CYCGRG 2 cut(s) 998, 1020
AvaII GGWCC 1 cut(s) 33
AxyI CCTNAGG 2 cut(s) 278, 927
BaeGI GKGCMC 1 cut(s) 604
BanII GRGCYC 3 cut(s) 1016, 1306, 1488
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 1488
BbvI GCAGC 4 cut(s) 484, 1277, 1293, 1315
BccI CCATC 9 cut(s) 56, 60, 127, 335, 662, 734, 952, 989, 1472
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 1389, 1423
BciT130I CCWGG 1 cut(s) 37
BciVI GTATCC 1 cut(s) 1039
BcoDI GTCTC 2 cut(s) 248, 880
BfaI CTAG 2 cut(s) 237, 1286
BfmI CTRYAG 2 cut(s) 552, 1329
BfrI CTTAAG 1 cut(s) 947
BfuAI ACCTGC 2 cut(s) 533, 1259
BfuI GTATCC 1 cut(s) 1039
BisI GCNGC 5 cut(s) 498, 576, 1266, 1282, 1329
BlpI GCTNAGC 2 cut(s) 509, 824
BlsI GCNGC 5 cut(s) 499, 577, 1267, 1283, 1330
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 2 cut(s) 998, 1020
BmgT120I GGNCC 2 cut(s) 33, 1392
BmiI GGNNCC 4 cut(s) 979, 990, 1118, 1394
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 3 cut(s) 249, 891, 1178
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 1472
Bpu1102I GCTNAGC 2 cut(s) 509, 824
BpuEI CTTGAG 2 cut(s) 380, 457
BsaJI CCNNGG 3 cut(s) 36, 261, 1021
BsaWI WCCGGW 2 cut(s) 657, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 267, 998
Bse118I RCCGGY 1 cut(s) 1119
Bse1I ACTGG 3 cut(s) 150, 472, 992
Bse21I CCTNAGG 2 cut(s) 278, 927
Bse3DI GCAATG 3 cut(s) 321, 410, 464
BseAI TCCGGA 1 cut(s) 657
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 3 cut(s) 36, 261, 1021
BseGI GGATG 4 cut(s) 48, 168, 654, 1464
BseLI CCNNNNNNNGG 3 cut(s) 223, 267, 998
BseMI GCAATG 3 cut(s) 321, 410, 464
BseMII CTCAG 4 cut(s) 243, 292, 815, 825
BseNI ACTGG 3 cut(s) 150, 472, 992
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 4 cut(s) 484, 1277, 1293, 1315
BseYI CCCAGC 1 cut(s) 266
BsgI GTGCAG 2 cut(s) 1184, 1221
Bsh1236I CGCG 1 cut(s) 939
BshFI GGCC 4 cut(s) 202, 357, 575, 1393
BshTI ACCGGT 1 cut(s) 1119
BsiHKAI GWGCWC 1 cut(s) 1488
BsiHKCI CYCGRG 2 cut(s) 998, 1020
BsiSI CCGG 2 cut(s) 658, 1120
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 3 cut(s) 223, 267, 998
BsmAI GTCTC 2 cut(s) 248, 880
BsmFI GGGAC 1 cut(s) 621
BsmI GAATGC 2 cut(s) 732, 1349
BsnI GGCC 4 cut(s) 202, 357, 575, 1393
BsoBI CYCGRG 2 cut(s) 998, 1020
Bsp1286I GDGCHC 4 cut(s) 604, 1016, 1306, 1488
Bsp13I TCCGGA 1 cut(s) 657
Bsp143I GATC 3 cut(s) 315, 1228, 1238
Bsp1720I GCTNAGC 2 cut(s) 509, 824
BspACI CCGC 2 cut(s) 576, 937
BspANI GGCC 4 cut(s) 202, 357, 575, 1393
BspCNI CTCAG 4 cut(s) 244, 291, 816, 824
BspEI TCCGGA 1 cut(s) 657
BspFNI CGCG 1 cut(s) 939
BspLI GGNNCC 4 cut(s) 979, 990, 1118, 1394
BspMAI CTGCAG 1 cut(s) 1333
BspMI ACCTGC 2 cut(s) 533, 1259
BspPI GGATC 3 cut(s) 310, 1236, 1246
BspQI GCTCTTC 1 cut(s) 763
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 3 cut(s) 321, 410, 464
BsrFI RCCGGY 1 cut(s) 1119
BsrI ACTGG 3 cut(s) 150, 472, 992
BssAI RCCGGY 1 cut(s) 1119
BssECI CCNNGG 3 cut(s) 36, 261, 1021
BssMI GATC 3 cut(s) 315, 1228, 1238
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 4 cut(s) 8, 351, 874, 1079
Bst6I CTCTTC 1 cut(s) 763
BstAFI CTTAAG 1 cut(s) 947
BstAPI GCANNNNNTGC 2 cut(s) 443, 1271
BstC8I GCNNGC 3 cut(s) 430, 580, 1167
BstDEI CTNAG 6 cut(s) 252, 278, 509, 811, 824, 927
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 48, 168, 654, 1464
BstFNI CGCG 1 cut(s) 939
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 3 cut(s) 318, 1231, 1241
BstMAI GTCTC 2 cut(s) 248, 880
BstMBI GATC 3 cut(s) 315, 1228, 1238
BstMWI GCNNNNNNNGC 5 cut(s) 434, 443, 494, 1091, 1271
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 3 cut(s) 895, 1139, 1404
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 2 cut(s) 552, 1329
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 1 cut(s) 939
BstV1I GCAGC 4 cut(s) 484, 1277, 1293, 1315
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 1228
BstYI RGATCY 1 cut(s) 1228
Bsu36I CCTNAGG 2 cut(s) 278, 927
BsuI GTATCC 1 cut(s) 1039
BsuRI GGCC 4 cut(s) 202, 357, 575, 1393
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 4 cut(s) 48, 168, 654, 1464
BtsI GCAGTG 2 cut(s) 675, 774
BtsIMutI CAGTG 6 cut(s) 13, 157, 347, 465, 675, 774
BveI ACCTGC 2 cut(s) 533, 1259
Cac8I GCNNGC 3 cut(s) 430, 580, 1167
CfoI GCGC 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 1119
Cfr13I GGNCC 2 cut(s) 33, 1392
Csp6I GTAC 2 cut(s) 539, 889
CspAI ACCGGT 1 cut(s) 1119
CviQI GTAC 2 cut(s) 539, 889
DdeI CTNAG 6 cut(s) 252, 278, 509, 811, 824, 927
DpnI GATC 3 cut(s) 317, 1230, 1240
DpnII GATC 3 cut(s) 315, 1228, 1238
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Ecl136II GAGCTC 1 cut(s) 1486
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 3 cut(s) 1016, 1306, 1488
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 1486
Eco57I CTGAAG 1 cut(s) 698
Eco81I CCTNAGG 2 cut(s) 278, 927
Eco88I CYCGRG 2 cut(s) 998, 1020
EcoICRI GAGCTC 1 cut(s) 1486
EcoRII CCWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 1351
EcoT38I GRGCYC 3 cut(s) 1016, 1306, 1488
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 621
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 5 cut(s) 498, 576, 1266, 1282, 1329
FokI GGATG 4 cut(s) 35, 155, 641, 1451
FriOI GRGCYC 3 cut(s) 1016, 1306, 1488
Fsp4HI GCNGC 5 cut(s) 498, 576, 1266, 1282, 1329
FspBI CTAG 2 cut(s) 237, 1286
FspI TGCGCA 1 cut(s) 529
GlaI GCGC 1 cut(s) 529
GluI GCNGC 5 cut(s) 498, 576, 1266, 1282, 1329
GsaI CCCAGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 1472
HaeIII GGCC 4 cut(s) 202, 357, 575, 1393
HapII CCGG 2 cut(s) 658, 1120
HhaI GCGC 1 cut(s) 530
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 3 cut(s) 67, 1312, 1457
HpaI GTTAAC 1 cut(s) 522
HpaII CCGG 2 cut(s) 658, 1120
HphI GGTGA 2 cut(s) 202, 371
Hpy166II GTNNAC 2 cut(s) 522, 539
Hpy188I TCNGA 2 cut(s) 33, 1177
Hpy188III TCNNGA 8 cut(s) 99, 185, 280, 658, 853, 1195, 1439, 1489
Hpy8I GTNNAC 2 cut(s) 522, 539
Hpy99I CGWCG 2 cut(s) 338, 1055
HpyAV CCTTC 3 cut(s) 213, 489, 722
HpyCH4III ACNGT 4 cut(s) 8, 351, 874, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 443, 494, 1091, 1271
HpyF3I CTNAG 6 cut(s) 252, 278, 509, 811, 824, 927
HspAI GCGC 1 cut(s) 528
Kpn2I TCCGGA 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 3 cut(s) 315, 1228, 1238
LguI GCTCTTC 1 cut(s) 763
LmnI GCTCC 2 cut(s) 983, 1491
Lsp1109I GCAGC 4 cut(s) 484, 1277, 1293, 1315
LweI GCATC 3 cut(s) 249, 891, 1178
MaeI CTAG 2 cut(s) 237, 1286
MaeIII GTNAC 2 cut(s) 463, 868
MalI GATC 3 cut(s) 317, 1230, 1240
MboI GATC 3 cut(s) 315, 1228, 1238
MboII GAAGA 7 cut(s) 200, 203, 206, 322, 331, 780, 1345
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 1 cut(s) 1228
MhlI GDGCHC 4 cut(s) 604, 1016, 1306, 1488
MluCI AATT 9 cut(s) 27, 42, 94, 272, 294, 438, 720, 1031, 1214
MlyI GAGTC 1 cut(s) 1451
MmeI TCCRAC 1 cut(s) 272
Mph1103I ATGCAT 1 cut(s) 1351
MroI TCCGGA 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 1093
MseI TTAA 6 cut(s) 26, 114, 521, 948, 1208, 1217
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 2 cut(s) 658, 1120
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 2 cut(s) 732, 1349
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 939
MwoI GCNNNNNNNGC 5 cut(s) 434, 443, 494, 1091, 1271
NdeI CATATG 1 cut(s) 452
NdeII GATC 3 cut(s) 315, 1228, 1238
NlaIV GGNNCC 4 cut(s) 979, 990, 1118, 1394
NmuCI GTSAC 1 cut(s) 463
NsbI TGCGCA 1 cut(s) 529
NsiI ATGCAT 1 cut(s) 1351
NspI RCATGY 3 cut(s) 895, 1139, 1404
PaqCI CACCTGC 1 cut(s) 1259
PceI AGGCCT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 763
PctI GAATGC 2 cut(s) 732, 1349
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 2 cut(s) 67, 1312
PinAI ACCGGT 1 cut(s) 1119
PkrI GCNGC 5 cut(s) 499, 577, 1267, 1283, 1330
PleI GAGTC 1 cut(s) 1451
PpsI GAGTC 1 cut(s) 1451
PshBI ATTAAT 1 cut(s) 1217
Psp124BI GAGCTC 1 cut(s) 1488
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 4 cut(s) 979, 990, 1118, 1394
PspPI GGNCC 2 cut(s) 33, 1392
PstI CTGCAG 1 cut(s) 1333
PsuI RGATCY 1 cut(s) 1228
RsaI GTAC 2 cut(s) 540, 890
RsaNI GTAC 2 cut(s) 539, 889
SacI GAGCTC 1 cut(s) 1488
SapI GCTCTTC 1 cut(s) 763
SaqAI TTAA 6 cut(s) 26, 114, 521, 948, 1208, 1217
SatI GCNGC 5 cut(s) 498, 576, 1266, 1282, 1329
Sau3AI GATC 3 cut(s) 315, 1228, 1238
Sau96I GGNCC 2 cut(s) 33, 1392
SchI GAGTC 1 cut(s) 1451
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 4 cut(s) 604, 1016, 1306, 1488
SfaNI GCATC 3 cut(s) 249, 891, 1178
SfcI CTRYAG 2 cut(s) 552, 1329
SinI GGWCC 1 cut(s) 33
SmlI CTYRAG 3 cut(s) 395, 472, 947
SmoI CTYRAG 3 cut(s) 395, 472, 947
Sse9I AATT 9 cut(s) 27, 42, 94, 272, 294, 438, 720, 1031, 1214
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 576, 937
SspMI CTAG 2 cut(s) 237, 1286
SstI GAGCTC 1 cut(s) 1488
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 4 cut(s) 8, 351, 874, 1079
TaqI TCGA 2 cut(s) 1221, 1460
TasI AATT 9 cut(s) 27, 42, 94, 272, 294, 438, 720, 1031, 1214
TatI WGTACW 2 cut(s) 538, 888
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 2 cut(s) 67, 1312
Tru1I TTAA 6 cut(s) 26, 114, 521, 948, 1208, 1217
Tru9I TTAA 6 cut(s) 26, 114, 521, 948, 1208, 1217
TscAI CASTG 6 cut(s) 13, 157, 354, 472, 682, 781
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 4 cut(s) 497, 1265, 1281, 1328
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 8 cut(s) 131, 195, 439, 1043, 1056, 1304, 1345, 1357
TspRI CASTG 6 cut(s) 13, 157, 354, 472, 682, 781
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 1 cut(s) 33
VspI ATTAAT 1 cut(s) 1217
XapI RAATTY 3 cut(s) 42, 94, 272
XceI RCATGY 3 cut(s) 895, 1139, 1404
XmnI GAANNNNTTC 1 cut(s) 1093
XspI CTAG 2 cut(s) 237, 1286
Zsp2I ATGCAT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.