FvH4_1g30310

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008565
Physical Location & Seq
Reverse (-)
24018151 .. 24029492
11342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30310.t2

Sequence Viewer

Length: 1563 bp
ATGCGGAAGCTGAAAGCCGCTGTCTCCCTAATCACAGCCACCGCTGCTACTGGCGCCACCTTCCACGCGTTCGACCCTAATTCTCTCTCCGACGATATCCTCCACGGCGTCGTTCGCTCTTCCCGCGCAATCTCCACCATTGCATTGACCGCCGTTGACTACAAGCTCACCTTGCGTGGACTGCCGCTGGACTCCGATGAGTATCGTGGCATGCTATCTGAGGTCCATTCTCGATCAGCTTGGAGAATTCTGAAATTGTGTGAAGCCAACAAAGGATTTTATGTGAAAGCTGGTCAATTTGTTGCAGCTCTGCGTCAGGTTCCAAAAGAATACTCATCGATTCTTTCCTCATTACAGGATCAGGCAGTTCCTTGTCACTTCAAAGCTATCGAAGAAGTGCTAATTCGTAATCTGGGGCGCAAGCTTTCAGATACGTTTATGTCACTGGATGAACAACCTTTGGCTGCGGCATCAATTGCTCAGGTACACAAAGCAGTTTTGAAGGATCATCAAGCAGTAGCAATCAAGGTGCAGTACCCTGGTCTGGAGCAGCAAATGAAACTGGATACTACAACGATGTATTTCATTTCAAAATCCATTACATGGTTTTTCCCAGAGTACAGATTCGGATGGCTGGTAGCAGAGTTTGTGCAGGCTATCTCTCTTGAGCTTGATTTTATTCAAGAAGCTGGAAACTCTGAGAGAACTGCCAGTAATTTCAAAAACAACAAATGGATAAAGGTTCCTCGTGTATTTTGGGATTTGACAACTAAACAAGTTCTGACAATGGAGTTCTGTACTGGACACAAGGTTGATGATGTAGACTATCTGAAGGAGAGGAAAATCGATCCAGTGAAGGTGGCCAAAGTACTGTTGGAAATGTTTGCTGAAATGATTTTTATCCATGGTTTTGTGCACGGAGATCCACACCCTGGTAATATATTAGTATCTCCAGATGGGCAGAATGGATTTTCTTTGGTCCTTCTAGACCATGGAATATACAAACAACTTGATGATAAATTTAGGTTGGAATATTGTCAACTCTGGAAGGCTTTAATTCTTCTCGACTCAAAAAAGTTACAGCATTTGGGTGAACAGTTTGGTGTTGCAAAGTATTCTAAATACTTTCCTGTCATTTTCACAGGAAGAACTGTTGACAGTACATCAGCTCTTGGGAAGGGAATGTCAATTGAAGAGAGAAGTAAATTAAAGCAAGAGCTCAAGTCGCTAAAGATGGAGGACATATCTTCATTTATGGAATCTTTGCCATCTGACTTTCTCACAATATTGCGTACAGACGGACTATTGAGGTCTATTGCTAGTAAGTTGGGCGCTTCACAAAGAGTCAGGATACTACTCTATGCCAAATATGCATTATACGGTCTTTCCCCAAATTTGAATCCAGAATATGATTTCGCTATTAAAGTAAAGTTCTCACAATTGATGGCGTATGTGAGTTACCTTCAGCTAAGGCTTATTCTTGAGCTGCTTTCTTGGATTGCGAAGGTCAAGCAGCTTCTATTTAGTTTGTATGAAAAGATAGGTGCAGTGCTGGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

521

Amino Acids

58.81

Weight (kDa)

9.03

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 118 - 362 1.7e-87 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 2 cut(s) 603, 932
AccI GTMKAC 1 cut(s) 822
AccII CGCG 2 cut(s) 68, 126
AciI CCGC 7 cut(s) 4, 18, 42, 124, 150, 185, 467
AclWI GGATC 4 cut(s) 366, 513, 842, 917
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 3 cut(s) 246, 1019, 1393
AcuI CTGAAG 2 cut(s) 851, 1448
AcyI GRCGYC 2 cut(s) 54, 108
AfaI GTAC 7 cut(s) 486, 536, 620, 799, 870, 1162, 1294
AfiI CCNNNNNNNGG 3 cut(s) 544, 603, 932
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 7 cut(s) 382, 502, 591, 683, 721, 1193, 1399
AjnI CCWGG 2 cut(s) 538, 931
Alw21I GWGCWC 2 cut(s) 918, 1221
Alw26I GTCTC 1 cut(s) 28
Alw44I GTGCAC 1 cut(s) 914
AlwI GGATC 4 cut(s) 366, 513, 842, 917
AoxI GGCC 1 cut(s) 861
ApaLI GTGCAC 1 cut(s) 914
ApeKI GCWGC 6 cut(s) 44, 305, 464, 550, 1486, 1513
ApoI RAATTY 3 cut(s) 246, 1019, 1393
AspLEI GCGC 4 cut(s) 56, 128, 420, 1334
AspS9I GGNCC 2 cut(s) 223, 979
AsuHPI GGTGA 2 cut(s) 160, 1103
AvaII GGWCC 2 cut(s) 223, 979
BaeGI GKGCMC 1 cut(s) 918
BalI TGGCCA 1 cut(s) 863
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 1221
BauI CACGAG 1 cut(s) 747
Bbv12I GWGCWC 2 cut(s) 918, 1221
BbvI GCAGC 6 cut(s) 31, 317, 451, 562, 1473, 1525
BccI CCATC 5 cut(s) 624, 950, 1228, 1276, 1438
BceAI ACGGC 2 cut(s) 121, 137
BciT130I CCWGG 2 cut(s) 540, 933
BciVI GTATCC 2 cut(s) 559, 1344
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 986, 1320
BfoI RGCGCY 2 cut(s) 57, 1335
BfuI GTATCC 2 cut(s) 559, 1344
BisI GCNGC 9 cut(s) 18, 45, 185, 306, 465, 468, 551, 1487, 1514
BlsI GCNGC 9 cut(s) 19, 46, 186, 307, 466, 469, 552, 1488, 1515
BmcAI AGTACT 1 cut(s) 870
Bme1390I CCNGG 2 cut(s) 540, 933
Bme18I GGWCC 2 cut(s) 223, 979
BmgT120I GGNCC 2 cut(s) 223, 979
BmiI GGNNCC 3 cut(s) 55, 321, 744
BmrFI CCNGG 2 cut(s) 540, 933
BmsI GCATC 1 cut(s) 479
BpmI CTGGAG 2 cut(s) 566, 936
Bpu10I CCTNAGC 2 cut(s) 480, 1469
BpuEI CTTGAG 3 cut(s) 686, 1205, 1502
Bsa29I ATCGAT 2 cut(s) 338, 846
BsaBI GATNNNNATC 2 cut(s) 201, 899
BsaHI GRCGYC 2 cut(s) 54, 108
BsaJI CCNNGG 5 cut(s) 103, 538, 904, 931, 991
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 603, 932
Bse1I ACTGG 6 cut(s) 55, 450, 567, 711, 805, 851
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 2 cut(s) 201, 899
BseBI CCWGG 2 cut(s) 540, 933
BseCI ATCGAT 2 cut(s) 338, 846
BseDI CCNNGG 5 cut(s) 103, 538, 904, 931, 991
BseGI GGATG 2 cut(s) 454, 635
BseJI GATNNNNATC 2 cut(s) 201, 899
BseLI CCNNNNNNNGG 3 cut(s) 544, 603, 932
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 3 cut(s) 210, 494, 690
BseNI ACTGG 6 cut(s) 55, 450, 567, 711, 805, 851
BseSI GKGCMC 1 cut(s) 918
BseXI GCAGC 6 cut(s) 31, 317, 451, 562, 1473, 1525
BsgI GTGCAG 2 cut(s) 551, 671
Bsh1236I CGCG 2 cut(s) 68, 126
BshFI GGCC 1 cut(s) 863
BshNI GGYRCC 1 cut(s) 53
BshVI ATCGAT 2 cut(s) 338, 846
BsiHKAI GWGCWC 2 cut(s) 918, 1221
BslI CCNNNNNNNGG 3 cut(s) 544, 603, 932
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 863
Bsp1286I GDGCHC 2 cut(s) 918, 1221
Bsp143I GATC 5 cut(s) 233, 358, 505, 847, 922
Bsp19I CCATGG 2 cut(s) 904, 991
BspACI CCGC 7 cut(s) 4, 18, 42, 124, 150, 185, 467
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 3 cut(s) 211, 493, 691
BspDI ATCGAT 2 cut(s) 338, 846
BspFNI CGCG 2 cut(s) 68, 126
BspLI GGNNCC 3 cut(s) 55, 321, 744
BspPI GGATC 4 cut(s) 366, 513, 842, 917
BspQI GCTCTTC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 6 cut(s) 55, 450, 567, 711, 805, 851
BssECI CCNNGG 5 cut(s) 103, 538, 904, 931, 991
BssMI GATC 5 cut(s) 233, 358, 505, 847, 922
BssNI GRCGYC 2 cut(s) 54, 108
BssSI CACGAG 1 cut(s) 747
BssT1I CCWWGG 2 cut(s) 904, 991
Bst2BI CACGAG 1 cut(s) 747
Bst2UI CCWGG 2 cut(s) 540, 933
Bst4CI ACNGT 5 cut(s) 873, 1098, 1153, 1160, 1382
Bst6I CTCTTC 2 cut(s) 124, 1188
BstACI GRCGYC 2 cut(s) 54, 108
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 212, 422, 654
BstDEI CTNAG 4 cut(s) 219, 480, 699, 1469
BstDSI CCRYGG 3 cut(s) 103, 904, 991
BstF5I GGATG 2 cut(s) 454, 635
BstFNI CGCG 2 cut(s) 68, 126
BstH2I RGCGCY 2 cut(s) 57, 1335
BstHHI GCGC 4 cut(s) 56, 128, 420, 1334
BstKTI GATC 5 cut(s) 236, 361, 508, 850, 925
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 5 cut(s) 233, 358, 505, 847, 922
BstNI CCWGG 2 cut(s) 540, 933
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 538, 931
BstSLI GKGCMC 1 cut(s) 918
BstUI CGCG 2 cut(s) 68, 126
BstV1I GCAGC 6 cut(s) 31, 317, 451, 562, 1473, 1525
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
Bsu15I ATCGAT 2 cut(s) 338, 846
BsuI GTATCC 2 cut(s) 559, 1344
BsuRI GGCC 1 cut(s) 863
BsuTUI ATCGAT 2 cut(s) 338, 846
BtgI CCRYGG 3 cut(s) 103, 904, 991
BtsCI GGATG 2 cut(s) 454, 635
BtsI GCAGTG 1 cut(s) 1554
BtsIMutI CAGTG 3 cut(s) 443, 858, 1554
Cac8I GCNNGC 3 cut(s) 212, 422, 654
CfoI GCGC 4 cut(s) 56, 128, 420, 1334
Cfr13I GGNCC 2 cut(s) 223, 979
ClaI ATCGAT 2 cut(s) 338, 846
CseI GACGC 2 cut(s) 97, 302
Csp6I GTAC 7 cut(s) 485, 535, 619, 798, 869, 1161, 1293
CviAII CATG 4 cut(s) 211, 603, 905, 992
CviQI GTAC 7 cut(s) 485, 535, 619, 798, 869, 1161, 1293
DdeI CTNAG 4 cut(s) 219, 480, 699, 1469
DinI GGCGCC 1 cut(s) 55
DpnI GATC 5 cut(s) 235, 360, 507, 849, 924
DpnII GATC 5 cut(s) 233, 358, 505, 847, 922
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 2 cut(s) 124, 1188
EarI CTCTTC 2 cut(s) 124, 1188
Ecl136II GAGCTC 1 cut(s) 1219
Eco130I CCWWGG 2 cut(s) 904, 991
Eco24I GRGCYC 1 cut(s) 1221
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 223, 979
Eco53kI GAGCTC 1 cut(s) 1219
Eco57I CTGAAG 2 cut(s) 851, 1448
EcoICRI GAGCTC 1 cut(s) 1219
EcoRI GAATTC 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 538, 931
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 904, 991
EcoT22I ATGCAT 1 cut(s) 1375
EcoT38I GRGCYC 1 cut(s) 1221
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 904, 991
FaeI CATG 4 cut(s) 214, 606, 908, 995
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 4 cut(s) 210, 602, 904, 991
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 9 cut(s) 18, 45, 185, 306, 465, 468, 551, 1487, 1514
FokI GGATG 2 cut(s) 461, 642
FriOI GRGCYC 1 cut(s) 1221
Fsp4HI GCNGC 9 cut(s) 18, 45, 185, 306, 465, 468, 551, 1487, 1514
FspBI CTAG 2 cut(s) 986, 1320
GlaI GCGC 4 cut(s) 55, 127, 419, 1333
GluI GCNGC 9 cut(s) 18, 45, 185, 306, 465, 468, 551, 1487, 1514
GsuI CTGGAG 2 cut(s) 566, 936
HaeII RGCGCY 2 cut(s) 57, 1335
HaeIII GGCC 1 cut(s) 863
HgaI GACGC 2 cut(s) 97, 302
HhaI GCGC 4 cut(s) 56, 128, 420, 1334
Hin1I GRCGYC 2 cut(s) 54, 108
Hin1II CATG 4 cut(s) 214, 606, 908, 995
Hin6I GCGC 4 cut(s) 54, 126, 418, 1332
HinP1I GCGC 4 cut(s) 54, 126, 418, 1332
HincII GTYRAC 3 cut(s) 157, 1040, 1156
HindII GTYRAC 3 cut(s) 157, 1040, 1156
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 7 cut(s) 191, 340, 624, 1067, 1259, 1344, 1399
HphI GGTGA 2 cut(s) 160, 1103
Hpy166II GTNNAC 8 cut(s) 157, 179, 487, 823, 916, 1040, 1094, 1156
Hpy8I GTNNAC 8 cut(s) 157, 179, 487, 823, 916, 1040, 1094, 1156
Hpy99I CGWCG 2 cut(s) 95, 113
HpyAV CCTTC 9 cut(s) 70, 496, 826, 850, 992, 1042, 1171, 1472, 1498
HpyCH4III ACNGT 5 cut(s) 873, 1098, 1153, 1160, 1382
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 8 cut(s) 143, 305, 532, 652, 916, 1109, 1373, 1547
HpyF3I CTNAG 4 cut(s) 219, 480, 699, 1469
HpySE526I ACGT 1 cut(s) 434
Hsp92I GRCGYC 2 cut(s) 54, 108
Hsp92II CATG 4 cut(s) 214, 606, 908, 995
HspAI GCGC 4 cut(s) 54, 126, 418, 1332
KasI GGCGCC 1 cut(s) 53
Kzo9I GATC 5 cut(s) 233, 358, 505, 847, 922
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 6 cut(s) 31, 317, 451, 562, 1473, 1525
LweI GCATC 1 cut(s) 479
MaeI CTAG 2 cut(s) 986, 1320
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 4 cut(s) 374, 441, 1077, 1457
MalI GATC 5 cut(s) 235, 360, 507, 849, 924
MboI GATC 5 cut(s) 233, 358, 505, 847, 922
MboII GAAGA 6 cut(s) 111, 404, 1052, 1158, 1205, 1239
MfeI CAATTG 3 cut(s) 474, 1188, 1439
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 2 cut(s) 918, 1221
MlsI TGGCCA 1 cut(s) 863
MluI ACGCGT 1 cut(s) 66
MluNI TGGCCA 1 cut(s) 863
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 185, 1061, 1353
MmeI TCCRAC 3 cut(s) 114, 855, 1008
MnlI CCTC 7 cut(s) 110, 214, 358, 756, 831, 1231, 1302
Mox20I TGGCCA 1 cut(s) 863
Mph1103I ATGCAT 1 cut(s) 1375
MscI TGGCCA 1 cut(s) 863
MseI TTAA 3 cut(s) 1055, 1208, 1422
MslI CAYNNNNRTG 1 cut(s) 1089
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 3 cut(s) 20, 44, 187
MspR9I CCNGG 2 cut(s) 540, 933
MunI CAATTG 3 cut(s) 474, 1188, 1439
MvaI CCWGG 2 cut(s) 540, 933
MvnI CGCG 2 cut(s) 68, 126
NarI GGCGCC 1 cut(s) 54
NcoI CCATGG 2 cut(s) 904, 991
NdeII GATC 5 cut(s) 233, 358, 505, 847, 922
NlaIII CATG 4 cut(s) 214, 606, 908, 995
NlaIV GGNNCC 3 cut(s) 55, 321, 744
NmuCI GTSAC 2 cut(s) 374, 441
NsiI ATGCAT 1 cut(s) 1375
NspI RCATGY 1 cut(s) 214
PaeI GCATGC 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 124
PfeI GAWTC 4 cut(s) 340, 624, 1259, 1399
PflMI CCANNNNNTGG 2 cut(s) 603, 932
PkrI GCNGC 9 cut(s) 19, 46, 186, 307, 466, 469, 552, 1488, 1515
PleI GAGTC 3 cut(s) 185, 1061, 1352
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 185, 1061, 1352
Psp124BI GAGCTC 1 cut(s) 1221
Psp6I CCWGG 2 cut(s) 538, 931
PspGI CCWGG 2 cut(s) 538, 931
PspN4I GGNNCC 3 cut(s) 55, 321, 744
PspPI GGNCC 2 cut(s) 223, 979
PsuI RGATCY 1 cut(s) 922
RsaI GTAC 7 cut(s) 486, 536, 620, 799, 870, 1162, 1294
RsaNI GTAC 7 cut(s) 485, 535, 619, 798, 869, 1161, 1293
RseI CAYNNNNRTG 1 cut(s) 1089
SacI GAGCTC 1 cut(s) 1221
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 3 cut(s) 1055, 1208, 1422
SatI GCNGC 9 cut(s) 18, 45, 185, 306, 465, 468, 551, 1487, 1514
Sau3AI GATC 5 cut(s) 233, 358, 505, 847, 922
Sau96I GGNCC 2 cut(s) 223, 979
ScaI AGTACT 1 cut(s) 870
SchI GAGTC 3 cut(s) 185, 1061, 1353
ScrFI CCNGG 2 cut(s) 540, 933
SduI GDGCHC 2 cut(s) 918, 1221
SfaNI GCATC 1 cut(s) 479
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 2 cut(s) 223, 979
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 3 cut(s) 665, 1220, 1481
SmoI CTYRAG 3 cut(s) 665, 1220, 1481
SphI GCATGC 1 cut(s) 214
SsiI CCGC 7 cut(s) 4, 18, 42, 124, 150, 185, 467
SspDI GGCGCC 1 cut(s) 53
SspI AATATT 2 cut(s) 1034, 1287
SspMI CTAG 2 cut(s) 986, 1320
SstI GAGCTC 1 cut(s) 1221
StyD4I CCNGG 2 cut(s) 538, 931
StyI CCWWGG 2 cut(s) 904, 991
TaaI ACNGT 5 cut(s) 873, 1098, 1153, 1160, 1382
TaiI ACGT 1 cut(s) 437
TaqI TCGA 6 cut(s) 72, 232, 338, 390, 846, 1065
TatI WGTACW 4 cut(s) 618, 797, 868, 1160
TauI GCSGC 3 cut(s) 20, 187, 470
TfiI GAWTC 4 cut(s) 340, 624, 1259, 1399
Tru1I TTAA 3 cut(s) 1055, 1208, 1422
Tru9I TTAA 3 cut(s) 1055, 1208, 1422
TscAI CASTG 3 cut(s) 450, 858, 1554
TseFI GTSAC 2 cut(s) 374, 441
TseI GCWGC 6 cut(s) 44, 305, 464, 550, 1486, 1513
Tsp45I GTSAC 2 cut(s) 374, 441
TspDTI ATGAA 5 cut(s) 465, 572, 574, 1239, 1548
TspGWI ACGGA 2 cut(s) 933, 1314
TspRI CASTG 3 cut(s) 450, 858, 1554
Van91I CCANNNNNTGG 2 cut(s) 603, 932
VneI GTGCAC 1 cut(s) 914
VpaK11BI GGWCC 2 cut(s) 223, 979
XapI RAATTY 3 cut(s) 246, 1019, 1393
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 871
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 2 cut(s) 986, 1320
ZrmI AGTACT 1 cut(s) 870
Zsp2I ATGCAT 1 cut(s) 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.