RLG00000022896

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008565
Physical Location & Seq
Forward (+)
14309010 .. 14320542
11533 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022896

Sequence Viewer

Length: 1329 bp
ATGCGGAAGCTCAAAACCACTGTTTGCCTAATCACAGCCACTACTGCTGGCCTCACCTTCCATGCCTTCAACCCTAATTCTCTCTCCGATTCCTCTCCAGGCTTTCCCGACAAAATTCGGACAGCCGTTCACGGCGTCGTTCGCTCTTCCCGCGCAGTCTCCACCATTGCATTGACTGCCGTTGACTACAAGTTCACCTTGCGTGGACTCCCGGTGAACTCAGATGAGTACCGTCGCAAGCTATCTGAGGTTCATTTTCGATCAGCTTGGAGAATTCTGAAATTGTGTGAAGCCAACAAAGGATTTTATGTGAAAGCTGGTCAATTTGTTGCAGCTTTGCGTCAGGTTCCAAAAGAATACTCATCCACTCTTTCCTCATTACAGGATCAGGCAGTTCCTTGTCACTTTAAAGCTATTGAAGAAGTACTAATTCGTAATCTGGGGCACAACCTGTCAGATACGTTTTTGTCACTGGATGAACAACCCTTAGCTGCTGCATCAATTGCTCAGGTACACAAAGCAGTTCTGAAGGATCATCAAGCAGTAGCAATCAAGGTGCAGTACCCTGGTCTGGAGCAGCAAATGAAACTAGATACAACAACAATGTATTTCATTTCAAAATCCATTACATGGTTTTTCCCAGAGTACAGATTTGGATGGCTGGTAGCAGAGTTTGTGCAGGCTATCTCTCTTGAGCTTGATTTTATTCAAGAAGCTGGAAACTCTGAGAGAACTGCCAATAATTTCAAAAACAACAAATGGATCAAGGTTCCTCGTGTATTTTGGGATTTGACAACTAAACAAGTTCTCACGATGGAATTCTGTACTGGACACAAGGTTGATGATGTAGACTATCTGAAGGAAAGGAAAATAGATCCAGTGAAGGTGGCCGAAGTGTTGTTGGAAATGTTTGCTGAAATGATTTTTATCCATGGTTTCTTGCACGGTGATCCGCACCCTGGTAATATATTAGTTTCTCCAGAAGGGCAGAATGGCTTTTCTTTGGTTCTTCTAGATCATGGAATATACAAACAACTCAGTGATAAATTTAGGTTGGACTACTGTCAGCTCTGGAAGGCTCTAATTCTTCTCGACACAAACAAGTTGCAGCATTTGGGGGACCAGTTTGGTGTTGTAAAGTATTCTAAATACTTTCCTGTCATATTTACAGGAAGAACTGTTGACAGTACATCGGCTCTTGGGAAAGGAATGTCAACTAAAGAGAGAAGGAAATTAAAGCAAGAGCTGCAGTCCCTAAAGATGGAGGACATATCTTCATTTATGGAATCTTTGCCTTCTGACTTTCTCACAATATTGCGTACAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

443

Amino Acids

50.19

Weight (kDa)

8.84

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 127 - 371 3.2e-87 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 630
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 153
AciI CCGC 3 cut(s) 4, 151, 953
AclWI GGATC 5 cut(s) 393, 540, 770, 869, 944
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 4 cut(s) 114, 273, 818, 1046
AcuI CTGAAG 2 cut(s) 548, 878
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 8 cut(s) 230, 426, 513, 563, 647, 826, 1189, 1321
AfiI CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
AgsI TTSAA 5 cut(s) 70, 419, 618, 710, 748
AjnI CCWGG 3 cut(s) 97, 565, 958
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 5 cut(s) 393, 540, 770, 869, 944
AoxI GGCC 2 cut(s) 49, 888
ApeKI GCWGC 6 cut(s) 332, 491, 494, 577, 1108, 1246
ApoI RAATTY 4 cut(s) 114, 273, 818, 1046
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 1120
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 46, 187, 226, 959
AvaII GGWCC 1 cut(s) 1120
BaeGI GKGCMC 1 cut(s) 447
BauI CACGAG 1 cut(s) 774
BbvI GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
BccI CCATC 3 cut(s) 651, 808, 1255
BceAI ACGGC 3 cut(s) 110, 148, 164
BciT130I CCWGG 3 cut(s) 99, 567, 960
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 2 cut(s) 590, 1013
BfmI CTRYAG 1 cut(s) 1247
BisI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
BlsI GCNGC 6 cut(s) 334, 493, 496, 579, 1110, 1248
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 4 cut(s) 99, 212, 567, 960
Bme18I GGWCC 1 cut(s) 1120
BmgT120I GGNCC 1 cut(s) 1120
BmiI GGNNCC 3 cut(s) 348, 771, 1121
BmrFI CCNGG 4 cut(s) 99, 212, 567, 960
BmsI GCATC 1 cut(s) 506
BoxI GACNNNNGTC 1 cut(s) 1062
BpmI CTGGAG 3 cut(s) 81, 593, 963
Bpu10I CCTNAGC 2 cut(s) 487, 507
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 565, 931, 958
Bsc4I CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
Bse1I ACTGG 4 cut(s) 477, 832, 878, 1123
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 926
BseBI CCWGG 3 cut(s) 99, 567, 960
BseDI CCNNGG 3 cut(s) 565, 931, 958
BseGI GGATG 3 cut(s) 362, 481, 662
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 5 cut(s) 234, 237, 521, 717, 1051
BseNI ACTGG 4 cut(s) 477, 832, 878, 1123
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
BsgI GTGCAG 2 cut(s) 578, 698
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 51, 890
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 2 cut(s) 1133, 1237
BslI CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 1133, 1237
BsnI GGCC 2 cut(s) 51, 890
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
Bsp19I CCATGG 1 cut(s) 931
BspACI CCGC 3 cut(s) 4, 151, 953
BspANI GGCC 2 cut(s) 51, 890
BspCNI CTCAG 5 cut(s) 233, 238, 520, 718, 1050
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 348, 771, 1121
BspMAI CTGCAG 1 cut(s) 1251
BspPI GGATC 5 cut(s) 393, 540, 770, 869, 944
BspQI GCTCTTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 4 cut(s) 477, 832, 878, 1123
BssECI CCNNGG 3 cut(s) 565, 931, 958
BssMI GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 1 cut(s) 931
Bst2BI CACGAG 1 cut(s) 774
Bst2UI CCWGG 3 cut(s) 99, 567, 960
Bst4CI ACNGT 6 cut(s) 22, 233, 947, 1064, 1180, 1187
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 135
BstAPI GCANNNNNTGC 3 cut(s) 176, 503, 1246
BstC8I GCNNGC 3 cut(s) 49, 239, 681
BstDEI CTNAG 6 cut(s) 220, 246, 487, 507, 726, 1037
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 3 cut(s) 362, 481, 662
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 7 cut(s) 263, 388, 535, 765, 877, 952, 1018
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
BstMWI GCNNNNNNNGC 6 cut(s) 44, 141, 150, 176, 503, 1246
BstNI CCWGG 3 cut(s) 99, 567, 960
BstPAI GACNNNNGTC 1 cut(s) 1062
BstSCI CCNGG 4 cut(s) 97, 210, 565, 958
BstSFI CTRYAG 1 cut(s) 1247
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 2 cut(s) 51, 890
BtgI CCRYGG 1 cut(s) 931
BtsCI GGATG 3 cut(s) 362, 481, 662
BtsIMutI CAGTG 4 cut(s) 18, 470, 885, 1045
Cac8I GCNNGC 3 cut(s) 49, 239, 681
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 1120
CseI GACGC 2 cut(s) 124, 329
Csp6I GTAC 8 cut(s) 229, 425, 512, 562, 646, 825, 1188, 1320
CviAII CATG 4 cut(s) 62, 630, 932, 1019
CviQI GTAC 8 cut(s) 229, 425, 512, 562, 646, 825, 1188, 1320
DdeI CTNAG 6 cut(s) 220, 246, 487, 507, 726, 1037
DpnI GATC 7 cut(s) 262, 387, 534, 764, 876, 951, 1017
DpnII GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 1120
Eco57I CTGAAG 2 cut(s) 548, 878
EcoRI GAATTC 2 cut(s) 273, 818
EcoRII CCWGG 3 cut(s) 97, 565, 958
EcoT14I CCWWGG 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 931
FaeI CATG 4 cut(s) 65, 633, 935, 1022
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 1133, 1237
FatI CATG 4 cut(s) 61, 629, 931, 1018
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
FokI GGATG 3 cut(s) 349, 488, 669
Fsp4HI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
FspBI CTAG 2 cut(s) 590, 1013
GlaI GCGC 1 cut(s) 154
GluI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
GsuI CTGGAG 3 cut(s) 81, 593, 963
HaeIII GGCC 2 cut(s) 51, 890
HapII CCGG 1 cut(s) 212
HgaI GACGC 2 cut(s) 124, 329
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 4 cut(s) 65, 633, 935, 1022
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 3 cut(s) 184, 1183, 1215
HindII GTYRAC 3 cut(s) 184, 1183, 1215
HinfI GANTC 3 cut(s) 89, 207, 1286
HpaII CCGG 1 cut(s) 212
HphI GGTGA 4 cut(s) 46, 187, 226, 959
Hpy166II GTNNAC 9 cut(s) 130, 184, 195, 206, 217, 514, 850, 1183, 1215
Hpy188III TCNNGA 9 cut(s) 107, 572, 692, 710, 811, 980, 1013, 1072, 1091
Hpy8I GTNNAC 9 cut(s) 130, 184, 195, 206, 217, 514, 850, 1183, 1215
Hpy99I CGWCG 2 cut(s) 140, 237
HpyAV CCTTC 9 cut(s) 67, 76, 523, 853, 877, 977, 1069, 1221, 1305
HpyCH4III ACNGT 6 cut(s) 22, 233, 947, 1064, 1180, 1187
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 8 cut(s) 170, 332, 497, 559, 679, 943, 1108, 1249
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 141, 150, 176, 503, 1246
HpyF3I CTNAG 6 cut(s) 220, 246, 487, 507, 726, 1037
HpySE526I ACGT 1 cut(s) 461
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 65, 633, 935, 1022
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
LweI GCATC 1 cut(s) 506
MaeI CTAG 2 cut(s) 590, 1013
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 401, 468
MalI GATC 7 cut(s) 262, 387, 534, 764, 876, 951, 1017
MboI GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
MboII GAAGA 6 cut(s) 138, 431, 1001, 1079, 1185, 1266
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 447
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 882, 1035
MnlI CCTC 6 cut(s) 62, 103, 241, 385, 783, 1258
MseI TTAA 2 cut(s) 408, 1235
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 4 cut(s) 99, 212, 567, 960
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 3 cut(s) 99, 567, 960
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 44, 141, 150, 176, 503, 1246
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 931
NdeII GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
NlaIII CATG 4 cut(s) 65, 633, 935, 1022
NlaIV GGNNCC 3 cut(s) 348, 771, 1121
NmuCI GTSAC 2 cut(s) 401, 468
PciSI GCTCTTC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 89, 1286
PflMI CCANNNNNTGG 1 cut(s) 630
PkrI GCNGC 6 cut(s) 334, 493, 496, 579, 1110, 1248
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 1062
Psp6I CCWGG 3 cut(s) 97, 565, 958
PspGI CCWGG 3 cut(s) 97, 565, 958
PspN4I GGNNCC 3 cut(s) 348, 771, 1121
PspPI GGNCC 1 cut(s) 1120
PstI CTGCAG 1 cut(s) 1251
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 8 cut(s) 230, 426, 513, 563, 647, 826, 1189, 1321
RsaNI GTAC 8 cut(s) 229, 425, 512, 562, 646, 825, 1188, 1320
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 408, 1235
SatI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
Sau3AI GATC 7 cut(s) 260, 385, 532, 762, 874, 949, 1015
Sau96I GGNCC 1 cut(s) 1120
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 4 cut(s) 99, 212, 567, 960
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 1247
SinI GGWCC 1 cut(s) 1120
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SsiI CCGC 3 cut(s) 4, 151, 953
SspI AATATT 1 cut(s) 1314
SspMI CTAG 2 cut(s) 590, 1013
StyD4I CCNGG 4 cut(s) 97, 210, 565, 958
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 6 cut(s) 22, 233, 947, 1064, 1180, 1187
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 259, 1092
TatI WGTACW 4 cut(s) 424, 645, 824, 1187
TfiI GAWTC 2 cut(s) 89, 1286
Tru1I TTAA 2 cut(s) 408, 1235
Tru9I TTAA 2 cut(s) 408, 1235
TscAI CASTG 4 cut(s) 25, 477, 885, 1045
TseFI GTSAC 2 cut(s) 401, 468
TseI GCWGC 6 cut(s) 332, 491, 494, 577, 1108, 1246
Tsp45I GTSAC 2 cut(s) 401, 468
TspDTI ATGAA 5 cut(s) 242, 492, 599, 601, 1266
TspRI CASTG 4 cut(s) 25, 477, 885, 1045
Van91I CCANNNNNTGG 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 1120
XapI RAATTY 4 cut(s) 114, 273, 818, 1046
XbaI TCTAGA 1 cut(s) 1012
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 2 cut(s) 590, 1013
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.