Rw3G025780

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008565
Physical Location & Seq
Reverse (-)
34798734 .. 34809328
10595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025780.1

Sequence Viewer

Length: 1425 bp
ATGCGGAAGCTCAAAACCACTGTTTGCCTAATCACAGCCACTACTGCTGGCCTCACCTCCCATGCCTTCAACCCTAATTCCCTCTCCGATTCCTCCCCAGACTTTCCCAACAAAATTCGGACAGCCGTTCACGGCGTCGTTCGCTCTTCCCGCGCAATCTCCACCATTGCATTGACTGCCGTTGACTACAAGTTCACCTTGCGTGGACTCCCCGTGGACTCAGATGAGTACCGTCGCAAGCTATCTGAGGTTCATTTTCGATCAGCTTGGAGAATTCTGAAATTGTGTGAAGCCAACAAAGGATTTTATGTGAAAGCTGGTCAATTTGTTGCAGCTCTGCGTCAGGTTCCAAAAGAATACTCATCAACTCTTTCCTCATTACAGGATCAGGCAGTTCCTTGTCACTTTAAAGCTATTGAAGAAGTACTAATTCGTAATCTGGGGCACAACCTGTCAGATACGTTTTTGTCACTGGATGAACAACCCTTAGCTGCTGCATCAATTGCTCAGGTACACAAAGCAGTTCTGAAGGATCATCAAGCAGTAGCAATCAAGGTGCAGTACCCTGGTCTGGAGCAGCAAATGAAACTAGATACAACAACAATGTATTTCACTTCAAAATCCATTACATGGTTTTTCCCAGAGTACAGATTTGGATGGCTGGTAGCAGAGTTTGTGCAGGCTATCTCTCTTGAGCTTGATTTTATTCAAGAAGCTGGAAACTCTGAGAGAACTGCCAATAATTTCATAAACAACAAATGGGTCAAGGTTCCTCATGTATTTTGGGATTTGACAACTAAACAAGTTCTGACGATGGAATTCTGTACTGGACACAAGGTTGATGATGTAGACTATCTGAAGGAAAGGAAAATAGATCCAGTGAAGGTGGCCAAAGTGTTGTTGGAAATGTTTGCTGAAATGATTTTTATCCATGGTTTCTTGCACGGAGATCCGCACCCTGGTAATATATTAGTTTCTCCAGAAGGGCAGAATGGCTTTTCTTTGGTTCTTCTAGATCATGGAATATACAAACAACTCAATGATAAATTTAGGTTGGACTACTGTCAGCTCTGGAAGGCTCTAATTCTTCTTGACTCAAAAAAGTTGCAGCATTTGGGGGAGCAGTTTGGTGTTGCAAAGTATTCTAAATACTTTCCTGTCATTTTTACAGGAAGAACTGTTGACAGTACATCAGCTCTTGGGAAAGGAATGTCAACTAAAGAGAAAAGGAAATTAAAGCAAGAGCTGCAGTCCCTAAAGATGGAGGACATATCTTCATTTATGGAATCTTTGCCATCTGACTTCCTCACAATATTGCGTACAGACGGACTATTGAGGTCTATTGCTAGTAAGTTGGGCGCTTCACAAATAGTCAGGATACTAGCTATGCCAAATATGCACTATATGGTCTTTCCCCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

474

Amino Acids

53.62

Weight (kDa)

9.07

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 127 - 371 2.5e-86 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 630
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 153
AciI CCGC 3 cut(s) 4, 151, 953
AclWI GGATC 4 cut(s) 393, 540, 869, 944
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 4 cut(s) 114, 273, 818, 1046
AcuI CTGAAG 2 cut(s) 548, 878
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 8 cut(s) 230, 426, 513, 563, 647, 826, 1189, 1321
AfiI CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
AgsI TTSAA 4 cut(s) 70, 419, 618, 710
AjnI CCWGG 2 cut(s) 565, 958
AlwI GGATC 4 cut(s) 393, 540, 869, 944
AoxI GGCC 2 cut(s) 49, 888
ApeKI GCWGC 6 cut(s) 332, 491, 494, 577, 1108, 1246
ApoI RAATTY 4 cut(s) 114, 273, 818, 1046
AspLEI GCGC 2 cut(s) 155, 1361
AsuHPI GGTGA 2 cut(s) 46, 187
BaeGI GKGCMC 1 cut(s) 447
BalI TGGCCA 1 cut(s) 890
BbvI GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
BccI CCATC 4 cut(s) 651, 808, 1255, 1303
BceAI ACGGC 3 cut(s) 110, 148, 164
BciT130I CCWGG 2 cut(s) 567, 960
BciVI GTATCC 1 cut(s) 1371
BfaI CTAG 4 cut(s) 590, 1013, 1347, 1382
BfmI CTRYAG 1 cut(s) 1247
BfoI RGCGCY 1 cut(s) 1362
BfuI GTATCC 1 cut(s) 1371
BisI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
BlsI GCNGC 6 cut(s) 334, 493, 496, 579, 1110, 1248
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 567, 960
BmiI GGNNCC 2 cut(s) 348, 771
BmrFI CCNGG 2 cut(s) 567, 960
BmsI GCATC 1 cut(s) 506
BoxI GACNNNNGTC 1 cut(s) 1062
BpmI CTGGAG 2 cut(s) 593, 963
Bpu10I CCTNAGC 2 cut(s) 487, 507
BpuEI CTTGAG 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 4 cut(s) 213, 565, 931, 958
Bsc4I CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
Bse1I ACTGG 3 cut(s) 477, 832, 878
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 926
BseBI CCWGG 2 cut(s) 567, 960
BseDI CCNNGG 4 cut(s) 213, 565, 931, 958
BseGI GGATG 2 cut(s) 481, 662
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 4 cut(s) 234, 237, 521, 717
BseNI ACTGG 3 cut(s) 477, 832, 878
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
BsgI GTGCAG 2 cut(s) 578, 698
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 51, 890
BslFI GGGAC 1 cut(s) 1237
BslI CCNNNNNNNGG 4 cut(s) 571, 630, 959, 1261
BsmFI GGGAC 1 cut(s) 1237
BsnI GGCC 2 cut(s) 51, 890
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
Bsp19I CCATGG 1 cut(s) 931
BspACI CCGC 3 cut(s) 4, 151, 953
BspANI GGCC 2 cut(s) 51, 890
BspCNI CTCAG 4 cut(s) 233, 238, 520, 718
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 348, 771
BspMAI CTGCAG 1 cut(s) 1251
BspPI GGATC 4 cut(s) 393, 540, 869, 944
BspQI GCTCTTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 3 cut(s) 477, 832, 878
BssECI CCNNGG 4 cut(s) 213, 565, 931, 958
BssMI GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 931
Bst2UI CCWGG 2 cut(s) 567, 960
Bst4CI ACNGT 5 cut(s) 22, 233, 1064, 1180, 1187
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 135
BstAPI GCANNNNNTGC 3 cut(s) 176, 503, 1246
BstC8I GCNNGC 3 cut(s) 49, 239, 681
BstDEI CTNAG 5 cut(s) 220, 246, 487, 507, 726
BstDSI CCRYGG 2 cut(s) 213, 931
BstF5I GGATG 2 cut(s) 481, 662
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 1362
BstHHI GCGC 2 cut(s) 155, 1361
BstKTI GATC 6 cut(s) 263, 388, 535, 877, 952, 1018
BstMBI GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
BstMWI GCNNNNNNNGC 7 cut(s) 44, 141, 150, 176, 503, 1246, 1396
BstNI CCWGG 2 cut(s) 567, 960
BstPAI GACNNNNGTC 1 cut(s) 1062
BstSCI CCNGG 2 cut(s) 565, 958
BstSFI CTRYAG 1 cut(s) 1247
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
BstX2I RGATCY 2 cut(s) 874, 949
BstYI RGATCY 2 cut(s) 874, 949
BsuI GTATCC 1 cut(s) 1371
BsuRI GGCC 2 cut(s) 51, 890
BtgI CCRYGG 2 cut(s) 213, 931
BtsCI GGATG 2 cut(s) 481, 662
BtsIMutI CAGTG 3 cut(s) 18, 470, 885
Cac8I GCNNGC 3 cut(s) 49, 239, 681
CfoI GCGC 2 cut(s) 155, 1361
CseI GACGC 2 cut(s) 124, 329
Csp6I GTAC 8 cut(s) 229, 425, 512, 562, 646, 825, 1188, 1320
CviAII CATG 5 cut(s) 62, 630, 776, 932, 1019
CviQI GTAC 8 cut(s) 229, 425, 512, 562, 646, 825, 1188, 1320
DdeI CTNAG 5 cut(s) 220, 246, 487, 507, 726
DpnI GATC 6 cut(s) 262, 387, 534, 876, 951, 1017
DpnII GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 931
Eco57I CTGAAG 2 cut(s) 548, 878
EcoRI GAATTC 2 cut(s) 273, 818
EcoRII CCWGG 2 cut(s) 565, 958
EcoT14I CCWWGG 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 931
FaeI CATG 5 cut(s) 65, 633, 779, 935, 1022
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 1237
FatI CATG 5 cut(s) 61, 629, 775, 931, 1018
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
FokI GGATG 2 cut(s) 488, 669
Fsp4HI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
FspBI CTAG 4 cut(s) 590, 1013, 1347, 1382
GlaI GCGC 2 cut(s) 154, 1360
GluI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
GsuI CTGGAG 2 cut(s) 593, 963
HaeII RGCGCY 1 cut(s) 1362
HaeIII GGCC 2 cut(s) 51, 890
HgaI GACGC 2 cut(s) 124, 329
HhaI GCGC 2 cut(s) 155, 1361
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 5 cut(s) 65, 633, 779, 935, 1022
Hin6I GCGC 2 cut(s) 153, 1359
HinP1I GCGC 2 cut(s) 153, 1359
HincII GTYRAC 3 cut(s) 184, 1183, 1215
HindII GTYRAC 3 cut(s) 184, 1183, 1215
HinfI GANTC 5 cut(s) 89, 207, 218, 1094, 1286
HphI GGTGA 2 cut(s) 46, 187
Hpy166II GTNNAC 9 cut(s) 130, 184, 195, 206, 217, 514, 850, 1183, 1215
Hpy188III TCNNGA 8 cut(s) 572, 692, 710, 980, 1013, 1072, 1091, 1375
Hpy8I GTNNAC 9 cut(s) 130, 184, 195, 206, 217, 514, 850, 1183, 1215
Hpy99I CGWCG 2 cut(s) 140, 237
HpyAV CCTTC 6 cut(s) 76, 523, 853, 877, 977, 1069
HpyCH4III ACNGT 5 cut(s) 22, 233, 1064, 1180, 1187
HpyCH4IV ACGT 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 141, 150, 176, 503, 1246, 1396
HpyF3I CTNAG 5 cut(s) 220, 246, 487, 507, 726
HpySE526I ACGT 1 cut(s) 461
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 5 cut(s) 65, 633, 779, 935, 1022
HspAI GCGC 2 cut(s) 153, 1359
Kzo9I GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 574, 1120
Lsp1109I GCAGC 6 cut(s) 344, 478, 481, 589, 1120, 1233
LweI GCATC 1 cut(s) 506
MaeI CTAG 4 cut(s) 590, 1013, 1347, 1382
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 401, 468
MalI GATC 6 cut(s) 262, 387, 534, 876, 951, 1017
MboI GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
MboII GAAGA 6 cut(s) 138, 431, 1001, 1079, 1185, 1266
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 2 cut(s) 874, 949
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 890
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 3 cut(s) 201, 212, 1088
MmeI TCCRAC 2 cut(s) 882, 1035
Mox20I TGGCCA 1 cut(s) 890
MscI TGGCCA 1 cut(s) 890
MseI TTAA 2 cut(s) 408, 1235
Msp20I TGGCCA 1 cut(s) 890
MspR9I CCNGG 2 cut(s) 567, 960
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 2 cut(s) 567, 960
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 7 cut(s) 44, 141, 150, 176, 503, 1246, 1396
NcoI CCATGG 1 cut(s) 931
NdeII GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
NlaIII CATG 5 cut(s) 65, 633, 779, 935, 1022
NlaIV GGNNCC 2 cut(s) 348, 771
NmuCI GTSAC 2 cut(s) 401, 468
PciSI GCTCTTC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 89, 1286
PflMI CCANNNNNTGG 1 cut(s) 630
PkrI GCNGC 6 cut(s) 334, 493, 496, 579, 1110, 1248
PleI GAGTC 3 cut(s) 201, 212, 1088
PpsI GAGTC 3 cut(s) 201, 212, 1088
PshAI GACNNNNGTC 1 cut(s) 1062
Psp6I CCWGG 2 cut(s) 565, 958
PspGI CCWGG 2 cut(s) 565, 958
PspN4I GGNNCC 2 cut(s) 348, 771
PstI CTGCAG 1 cut(s) 1251
PsuI RGATCY 2 cut(s) 874, 949
RsaI GTAC 8 cut(s) 230, 426, 513, 563, 647, 826, 1189, 1321
RsaNI GTAC 8 cut(s) 229, 425, 512, 562, 646, 825, 1188, 1320
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 408, 1235
SatI GCNGC 6 cut(s) 333, 492, 495, 578, 1109, 1247
Sau3AI GATC 6 cut(s) 260, 385, 532, 874, 949, 1015
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 3 cut(s) 201, 212, 1088
ScrFI CCNGG 2 cut(s) 567, 960
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 1247
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SsiI CCGC 3 cut(s) 4, 151, 953
SspI AATATT 1 cut(s) 1314
SspMI CTAG 4 cut(s) 590, 1013, 1347, 1382
StyD4I CCNGG 2 cut(s) 565, 958
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 5 cut(s) 22, 233, 1064, 1180, 1187
TaiI ACGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 259
TatI WGTACW 4 cut(s) 424, 645, 824, 1187
TfiI GAWTC 2 cut(s) 89, 1286
Tru1I TTAA 2 cut(s) 408, 1235
Tru9I TTAA 2 cut(s) 408, 1235
TscAI CASTG 3 cut(s) 25, 477, 885
TseFI GTSAC 2 cut(s) 401, 468
TseI GCWGC 6 cut(s) 332, 491, 494, 577, 1108, 1246
Tsp45I GTSAC 2 cut(s) 401, 468
TspDTI ATGAA 5 cut(s) 242, 492, 599, 736, 1266
TspGWI ACGGA 2 cut(s) 960, 1341
TspRI CASTG 3 cut(s) 25, 477, 885
Van91I CCANNNNNTGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 114, 273, 818, 1046
XbaI TCTAGA 1 cut(s) 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 4 cut(s) 590, 1013, 1347, 1382
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.