Rh3BG328300

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008565
Physical Location & Seq
Reverse (-)
34286222 .. 34296249
10028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG328300.1

Sequence Viewer

Length: 1437 bp
ATGCGGAAGCTCAAAACCACTGTTTGCCTAATCACAGCCACTACTGCTGGCCTCACCTTCCATGCCTTCAACCCTAATTCCTCCCCAGACTTTCCCGACAAAATTCGGACAGCCGTTCACGGCGTCGTTCGCTCTTCCCGCGCAATCTCCACCATTGCATTGACTGCCGTTGACTACAAGTTCACCTTGCGTGGACTCCCCGTGGACTCAGATGAGTACCGCCGCAAGCTATCTGAGGTTCATTTTCGATCAGCTTGGAGAATTCTGAAATTGTGTGAAGCCAACAAAGGATTTTATGTGAAAGCTGGTCAATTTGTTGCAGCTCTGCGTCAGGTTCCAAAAGAATACTCATCAACTCTTTCCTCATTACAGGATCAGGCAGTTCCTTGTCACTTTAAAGCTATTGAAGAAGTACTAATTCGTAATCTGGGGCACAACCTGTCCGATACGTTTTTGTCACTGGATGAACAACCCTTAGCTGCTGCATCAATTGCTCAGGTACACAAAGCAGTTCTGAAGGATCATCAAGCAGTAGCAATCAAGGTGCAGTACCCTGGTCTGGAGCAGCAAATGAAACTAGATACAACAACAATGTATTTCATTTCAAAATCCATTACATGGTTTTTCCCAGAGTACAGATTTGGATGGCTGGTAGCAGAGTTTGTGCAGGCTATCTCTCTTGAGCTTGATTTTATTCAAGAAGCTGGAAACTCTGAGAGAACTGCCAATAATTTCAAAAACAACAAATGGGTCAAGGTTCCTCATGTATTTTGGGATTTGACAACTAAACAAGTTCTGACGATGGAATTCTGTACTGGACACAAGGTTGATGATGTAGACTATCTGAAGGAAAGGAAAATAGATCCAGTGAAGGTGGCCAAAGTGTTGTTGGAAATGTTTGCTGAAATGATTTTTATCCATGGTTTCTTGCACGGAGATCCGCACCCTGGTAATATATTAGTTTCTCCAGAAGGGCAGAATGGCTTTTCTTTGGTTCTTCTAGATCATGGAATATACAAACAACTCAATGATAAATTTAGGTTGGACTACTGTCAGCTCTGGAAGGCTCTAATTCTTCTCGACTCAAAAAAGTTGCAGCATTTGGGGGAGCAGTTTGGTGTTGCAAAGTATTCTAAATACTTTCCTGTCATTTTTACAGGAAGAACTGTTGACAGTACATCGGCTCTTGGGCAAGGAATGTCAACTAAAGAGAGAAGGAAATTAAAGCAAGAGCTGCAGTCCCTAAAGATGGAGGACATATCTTCATTTATGGAATCTTTGCCATCTGACTTCCTCACAATATTGCGTACAGATGGACTATTGAGGTCTATTGCTAGTAAGTTGGGCGCTTCACAAAGAGTCAGGATACTAGCCTATGCCAAATATGCACTATATGGTCTTTCCCCAAAGTTGAATCCAGAATCTGGTAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

478

Amino Acids

54.14

Weight (kDa)

9.23

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 123 - 367 2.4e-87 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 618, 1424
AccI GTMKAC 1 cut(s) 837
AccII CGCG 1 cut(s) 141
AciI CCGC 5 cut(s) 4, 139, 220, 223, 941
AclWI GGATC 4 cut(s) 381, 528, 857, 932
AcoI YGGCCR 1 cut(s) 876
AcsI RAATTY 5 cut(s) 102, 261, 806, 1034, 1430
AcuI CTGAAG 2 cut(s) 536, 866
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 8 cut(s) 218, 414, 501, 551, 635, 814, 1177, 1309
AfiI CCNNNNNNNGG 5 cut(s) 559, 618, 947, 1249, 1424
AgsI TTSAA 6 cut(s) 70, 407, 606, 698, 736, 1414
AjnI CCWGG 2 cut(s) 553, 946
AlwI GGATC 4 cut(s) 381, 528, 857, 932
AlwNI CAGNNNCTG 1 cut(s) 1424
AoxI GGCC 2 cut(s) 49, 876
ApeKI GCWGC 6 cut(s) 320, 479, 482, 565, 1096, 1234
ApoI RAATTY 5 cut(s) 102, 261, 806, 1034, 1430
AspLEI GCGC 2 cut(s) 143, 1349
AsuHPI GGTGA 2 cut(s) 46, 175
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 878
BbvI GCAGC 6 cut(s) 332, 466, 469, 577, 1108, 1221
BccI CCATC 5 cut(s) 639, 796, 1243, 1291, 1307
BceAI ACGGC 3 cut(s) 98, 136, 152
BciT130I CCWGG 2 cut(s) 555, 948
BciVI GTATCC 1 cut(s) 1359
BfaI CTAG 4 cut(s) 578, 1001, 1335, 1370
BfmI CTRYAG 1 cut(s) 1235
BfoI RGCGCY 1 cut(s) 1350
BfuI GTATCC 1 cut(s) 1359
BisI GCNGC 7 cut(s) 223, 321, 480, 483, 566, 1097, 1235
BlsI GCNGC 7 cut(s) 224, 322, 481, 484, 567, 1098, 1236
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 555, 948
BmiI GGNNCC 2 cut(s) 336, 759
BmrFI CCNGG 2 cut(s) 555, 948
BmsI GCATC 1 cut(s) 494
BoxI GACNNNNGTC 1 cut(s) 1050
BpmI CTGGAG 2 cut(s) 581, 951
Bpu10I CCTNAGC 2 cut(s) 475, 495
BpuEI CTTGAG 1 cut(s) 701
BsaBI GATNNNNATC 1 cut(s) 914
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 201, 553, 919, 946
Bsc4I CCNNNNNNNGG 5 cut(s) 559, 618, 947, 1249, 1424
Bse1I ACTGG 3 cut(s) 465, 820, 866
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 914
BseBI CCWGG 2 cut(s) 555, 948
BseDI CCNNGG 4 cut(s) 201, 553, 919, 946
BseGI GGATG 2 cut(s) 469, 650
BseJI GATNNNNATC 1 cut(s) 914
BseLI CCNNNNNNNGG 5 cut(s) 559, 618, 947, 1249, 1424
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 4 cut(s) 222, 225, 509, 705
BseNI ACTGG 3 cut(s) 465, 820, 866
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 6 cut(s) 332, 466, 469, 577, 1108, 1221
BsgI GTGCAG 2 cut(s) 566, 686
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 51, 878
BslFI GGGAC 1 cut(s) 1225
BslI CCNNNNNNNGG 5 cut(s) 559, 618, 947, 1249, 1424
BsmFI GGGAC 1 cut(s) 1225
BsnI GGCC 2 cut(s) 51, 878
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
Bsp19I CCATGG 1 cut(s) 919
BspACI CCGC 5 cut(s) 4, 139, 220, 223, 941
BspANI GGCC 2 cut(s) 51, 878
BspCNI CTCAG 4 cut(s) 221, 226, 508, 706
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 336, 759
BspMAI CTGCAG 1 cut(s) 1239
BspPI GGATC 4 cut(s) 381, 528, 857, 932
BspQI GCTCTTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 3 cut(s) 465, 820, 866
BssECI CCNNGG 4 cut(s) 201, 553, 919, 946
BssMI GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 919
Bst2UI CCWGG 2 cut(s) 555, 948
Bst4CI ACNGT 4 cut(s) 22, 1052, 1168, 1175
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 3 cut(s) 164, 491, 1234
BstC8I GCNNGC 3 cut(s) 49, 227, 669
BstDEI CTNAG 5 cut(s) 208, 234, 475, 495, 714
BstDSI CCRYGG 2 cut(s) 201, 919
BstF5I GGATG 2 cut(s) 469, 650
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 1350
BstHHI GCGC 2 cut(s) 143, 1349
BstKTI GATC 6 cut(s) 251, 376, 523, 865, 940, 1006
BstMBI GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
BstMWI GCNNNNNNNGC 7 cut(s) 44, 129, 138, 164, 491, 1234, 1385
BstNI CCWGG 2 cut(s) 555, 948
BstPAI GACNNNNGTC 1 cut(s) 1050
BstSCI CCNGG 2 cut(s) 553, 946
BstSFI CTRYAG 1 cut(s) 1235
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 6 cut(s) 332, 466, 469, 577, 1108, 1221
BstX2I RGATCY 2 cut(s) 862, 937
BstYI RGATCY 2 cut(s) 862, 937
BsuI GTATCC 1 cut(s) 1359
BsuRI GGCC 2 cut(s) 51, 878
BtgI CCRYGG 2 cut(s) 201, 919
BtsCI GGATG 2 cut(s) 469, 650
BtsIMutI CAGTG 3 cut(s) 18, 458, 873
Cac8I GCNNGC 3 cut(s) 49, 227, 669
CaiI CAGNNNCTG 1 cut(s) 1424
CfoI GCGC 2 cut(s) 143, 1349
CseI GACGC 2 cut(s) 112, 317
Csp6I GTAC 8 cut(s) 217, 413, 500, 550, 634, 813, 1176, 1308
CviAII CATG 5 cut(s) 62, 618, 764, 920, 1007
CviQI GTAC 8 cut(s) 217, 413, 500, 550, 634, 813, 1176, 1308
DdeI CTNAG 5 cut(s) 208, 234, 475, 495, 714
DpnI GATC 6 cut(s) 250, 375, 522, 864, 939, 1005
DpnII GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
DraI TTTAAA 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 876
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 919
Eco57I CTGAAG 2 cut(s) 536, 866
EcoRI GAATTC 2 cut(s) 261, 806
EcoRII CCWGG 2 cut(s) 553, 946
EcoT14I CCWWGG 1 cut(s) 919
ErhI CCWWGG 1 cut(s) 919
FaeI CATG 5 cut(s) 65, 621, 767, 923, 1010
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 1 cut(s) 1225
FatI CATG 5 cut(s) 61, 617, 763, 919, 1006
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 1 cut(s) 837
Fnu4HI GCNGC 7 cut(s) 223, 321, 480, 483, 566, 1097, 1235
FokI GGATG 2 cut(s) 476, 657
Fsp4HI GCNGC 7 cut(s) 223, 321, 480, 483, 566, 1097, 1235
FspBI CTAG 4 cut(s) 578, 1001, 1335, 1370
GlaI GCGC 2 cut(s) 142, 1348
GluI GCNGC 7 cut(s) 223, 321, 480, 483, 566, 1097, 1235
GsuI CTGGAG 2 cut(s) 581, 951
HaeII RGCGCY 1 cut(s) 1350
HaeIII GGCC 2 cut(s) 51, 878
HgaI GACGC 2 cut(s) 112, 317
HhaI GCGC 2 cut(s) 143, 1349
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 65, 621, 767, 923, 1010
Hin6I GCGC 2 cut(s) 141, 1347
HinP1I GCGC 2 cut(s) 141, 1347
HincII GTYRAC 3 cut(s) 172, 1171, 1203
HindII GTYRAC 3 cut(s) 172, 1171, 1203
HinfI GANTC 7 cut(s) 195, 206, 1082, 1274, 1359, 1414, 1421
HphI GGTGA 2 cut(s) 46, 175
Hpy166II GTNNAC 9 cut(s) 118, 172, 183, 194, 205, 502, 838, 1171, 1203
Hpy8I GTNNAC 9 cut(s) 118, 172, 183, 194, 205, 502, 838, 1171, 1203
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 8 cut(s) 67, 76, 511, 841, 865, 965, 1057, 1209
HpyCH4III ACNGT 4 cut(s) 22, 1052, 1168, 1175
HpyCH4IV ACGT 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 129, 138, 164, 491, 1234, 1385
HpyF3I CTNAG 5 cut(s) 208, 234, 475, 495, 714
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 65, 621, 767, 923, 1010
HspAI GCGC 2 cut(s) 141, 1347
Kzo9I GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 562, 1108
Lsp1109I GCAGC 6 cut(s) 332, 466, 469, 577, 1108, 1221
LweI GCATC 1 cut(s) 494
MaeI CTAG 4 cut(s) 578, 1001, 1335, 1370
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 2 cut(s) 389, 456
MalI GATC 6 cut(s) 250, 375, 522, 864, 939, 1005
MboI GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
MboII GAAGA 6 cut(s) 126, 419, 989, 1067, 1173, 1254
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 862, 937
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 878
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 4 cut(s) 189, 200, 1076, 1368
MmeI TCCRAC 2 cut(s) 870, 1023
MnlI CCTC 8 cut(s) 62, 91, 229, 373, 771, 1246, 1304, 1317
Mox20I TGGCCA 1 cut(s) 878
MscI TGGCCA 1 cut(s) 878
MseI TTAA 2 cut(s) 396, 1223
Msp20I TGGCCA 1 cut(s) 878
MspR9I CCNGG 2 cut(s) 555, 948
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 2 cut(s) 555, 948
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 7 cut(s) 44, 129, 138, 164, 491, 1234, 1385
NcoI CCATGG 1 cut(s) 919
NdeII GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
NlaIII CATG 5 cut(s) 65, 621, 767, 923, 1010
NlaIV GGNNCC 2 cut(s) 336, 759
NmuCI GTSAC 2 cut(s) 389, 456
PciSI GCTCTTC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 1274, 1414, 1421
PflMI CCANNNNNTGG 2 cut(s) 618, 1424
PkrI GCNGC 7 cut(s) 224, 322, 481, 484, 567, 1098, 1236
PleI GAGTC 4 cut(s) 189, 200, 1076, 1367
PpsI GAGTC 4 cut(s) 189, 200, 1076, 1367
PshAI GACNNNNGTC 1 cut(s) 1050
Psp6I CCWGG 2 cut(s) 553, 946
PspGI CCWGG 2 cut(s) 553, 946
PspN4I GGNNCC 2 cut(s) 336, 759
PstI CTGCAG 1 cut(s) 1239
PstNI CAGNNNCTG 1 cut(s) 1424
PsuI RGATCY 2 cut(s) 862, 937
RsaI GTAC 8 cut(s) 218, 414, 501, 551, 635, 814, 1177, 1309
RsaNI GTAC 8 cut(s) 217, 413, 500, 550, 634, 813, 1176, 1308
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 396, 1223
SatI GCNGC 7 cut(s) 223, 321, 480, 483, 566, 1097, 1235
Sau3AI GATC 6 cut(s) 248, 373, 520, 862, 937, 1003
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 4 cut(s) 189, 200, 1076, 1368
ScrFI CCNGG 2 cut(s) 555, 948
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 1235
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SsiI CCGC 5 cut(s) 4, 139, 220, 223, 941
SspI AATATT 1 cut(s) 1302
SspMI CTAG 4 cut(s) 578, 1001, 1335, 1370
StyD4I CCNGG 2 cut(s) 553, 946
StyI CCWWGG 1 cut(s) 919
TaaI ACNGT 4 cut(s) 22, 1052, 1168, 1175
TaiI ACGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 247, 1080
TatI WGTACW 4 cut(s) 412, 633, 812, 1175
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 3 cut(s) 1274, 1414, 1421
Tru1I TTAA 2 cut(s) 396, 1223
Tru9I TTAA 2 cut(s) 396, 1223
TscAI CASTG 3 cut(s) 25, 465, 873
TseFI GTSAC 2 cut(s) 389, 456
TseI GCWGC 6 cut(s) 320, 479, 482, 565, 1096, 1234
Tsp45I GTSAC 2 cut(s) 389, 456
TspDTI ATGAA 5 cut(s) 230, 480, 587, 589, 1254
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 3 cut(s) 25, 465, 873
Van91I CCANNNNNTGG 2 cut(s) 618, 1424
XapI RAATTY 5 cut(s) 102, 261, 806, 1034, 1430
XbaI TCTAGA 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 837
XspI CTAG 4 cut(s) 578, 1001, 1335, 1370
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.