Rorug03G0242900
TCP Family

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005226
Physical Location & Seq
Reverse (-)
22629122 .. 22634598
5477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0242900.1

Sequence Viewer

Length: 1167 bp
ATGGACTATGGTGTCTCCGACAGCACTGGTACTGATGATGATCTTCCTCCATCTCCTCAATACAGAATTCCAAGAGGGGGTCAATTTGCTGGAATTGAAAGATCTGCAGTAGGTTCTATCTCATTCGCTAGGAAGTATACTGACATGGAGGCCCAAATTCATCACCTAGAGCAAGAAGCATACTGTGCAGTCCTGCGTGCTTTCAAAGCTCAGTCTGATGCGATTACTTGGGAGAAGGAAGGTTTGATTACAGAACTTAGGAAAGAGCTGAGAGTATCCGATGATGAACACAGAGAGCTTCTTGGCAGGGTTAACTCTGATGATATCATCAGTAAGATAAGAGAGTGGAGAACGGCAGGTGGGCATCAAGCTGCGAGATTCAGTGCATCCCAGCCTGTTTATGACCTTGTATCCAGTCCTACTGTTTCAGCATCTCGAAAGAAACAGAAAACATCCCAATCGCAGCAGGGTCAGCCATTCCCTGGTTTATCCTCAATGAAGTCTATGCAGTACCCTTCTACAGGACCTTCGTTGAGTAGGCAGCTCACTAGCCGCAGTACTACTGGTCCCCTTGCCATAACTGAACCTGCTGTAGCAGCAACATATGATTTAATTGGAAAAAAAGTGTGGATGAGATGGCCTGCAGACAACAGCTTCTATGAAGCCCTTATAACAGACTACAACCCTAATGATGGTCGACATGCTTTGATCTACGATAAAAATACAGCAAATGAGACATTTGAATGGGTAAATTTCAAAGAGATTTCTCGTGAGGATATCCGTTGGGAAGGTGAGGAACTGGGGCCATCTCATCAAGGGAACCATGGCAGCGGACAAGGACGTAGGGTTAAGAAATCTACGAACCATGGTGGTGTTGGTCCAGTTTCTGGGAGAGGTCGAGGACATATAAAGCCTCAATCAAAGAAACAACTTCTTCCTTCACAAAATGGCATAGGAAATAAGTTGCCAGATGATCTAGAATTATTGAATACTGATTCTCTGGTAAAGGAGGTGGAGAGAGTTTTCAATGCAAGTAATCCGGACCCCTTTGAGCTTGAAAACGCAAGGAAAATGCTGAAAGATCACGAACAGGCACTTGTTGATGCCATTGAAAGGCTTGCATATGCATCGGATGGTGAAAGTGCCTGTCACACACTGCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

388

Amino Acids

43.1

Weight (kDa)

6.2

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENT PF03735 51 - 119 4.6e-31 ENT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AarI CACCTGC 1 cut(s) 347
AasI GACNNNNNNGTC 1 cut(s) 11
Acc36I ACCTGC 2 cut(s) 347, 595
AccB7I CCANNNNNTGG 2 cut(s) 482, 887
AccI GTMKAC 2 cut(s) 137, 697
AccIII TCCGGA 1 cut(s) 1039
AciI CCGC 2 cut(s) 553, 831
AcsI RAATTY 3 cut(s) 66, 156, 751
AfaI GTAC 3 cut(s) 31, 512, 559
AfiI CCNNNNNNNGG 6 cut(s) 77, 482, 521, 692, 887, 1113
AgsI TTSAA 8 cut(s) 98, 205, 743, 757, 988, 1027, 1058, 1112
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 7 cut(s) 209, 268, 298, 371, 544, 654, 1054
AluI AGCT 7 cut(s) 209, 268, 298, 371, 544, 654, 1054
Alw26I GTCTC 2 cut(s) 19, 728
AlwNI CAGNNNCTG 1 cut(s) 887
Aor13HI TCCGGA 1 cut(s) 1039
AoxI GGCC 3 cut(s) 150, 638, 803
ApeKI GCWGC 5 cut(s) 371, 463, 541, 596, 828
ApoI RAATTY 3 cut(s) 66, 156, 751
AspS9I GGNCC 6 cut(s) 151, 524, 566, 803, 878, 1042
AsuHPI GGTGA 3 cut(s) 155, 803, 1148
AvaII GGWCC 4 cut(s) 524, 566, 878, 1042
BauI CACGAG 1 cut(s) 768
BbvI GCAGC 5 cut(s) 358, 475, 553, 608, 840
BccI CCATC 5 cut(s) 58, 630, 686, 814, 1127
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 1110, 1144
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 2 cut(s) 286, 421
BcoDI GTCTC 2 cut(s) 19, 728
BfaI CTAG 4 cut(s) 129, 167, 549, 977
BfmI CTRYAG 4 cut(s) 105, 519, 591, 642
BfuAI ACCTGC 2 cut(s) 347, 595
BfuI GTATCC 2 cut(s) 286, 421
BglII AGATCT 1 cut(s) 101
BisI GCNGC 6 cut(s) 372, 464, 542, 553, 597, 829
BlsI GCNGC 6 cut(s) 373, 465, 543, 554, 598, 830
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 4 cut(s) 524, 566, 878, 1042
BmgT120I GGNCC 6 cut(s) 151, 524, 566, 803, 878, 1042
BmiI GGNNCC 4 cut(s) 568, 804, 821, 1044
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 809
BmsI GCATC 6 cut(s) 208, 373, 395, 440, 1093, 1136
BmuI ACTGGG 1 cut(s) 809
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 481, 823, 865
BsaWI WCCGGW 1 cut(s) 1039
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 482, 521, 692, 887, 1113
Bse1I ACTGG 5 cut(s) 31, 414, 568, 804, 881
Bse8I GATNNNNATC 1 cut(s) 39
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 481, 823, 865
BseGI GGATG 4 cut(s) 386, 452, 636, 1138
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 6 cut(s) 77, 482, 521, 692, 887, 1113
BseMII CTCAG 2 cut(s) 224, 260
BseNI ACTGG 5 cut(s) 31, 414, 568, 804, 881
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 358, 475, 553, 608, 840
BseYI CCCAGC 1 cut(s) 390
BsgI GTGCAG 2 cut(s) 207, 1142
BshFI GGCC 3 cut(s) 152, 640, 805
BsiSI CCGG 1 cut(s) 1040
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 6 cut(s) 77, 482, 521, 692, 887, 1113
BsmAI GTCTC 2 cut(s) 19, 728
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 3 cut(s) 152, 640, 805
Bsp13I TCCGGA 1 cut(s) 1039
Bsp143I GATC 5 cut(s) 40, 101, 708, 973, 1081
Bsp19I CCATGG 2 cut(s) 823, 865
BspACI CCGC 2 cut(s) 553, 831
BspANI GGCC 3 cut(s) 152, 640, 805
BspCNI CTCAG 2 cut(s) 223, 261
BspEI TCCGGA 1 cut(s) 1039
BspLI GGNNCC 4 cut(s) 568, 804, 821, 1044
BspMAI CTGCAG 2 cut(s) 109, 646
BspMI ACCTGC 2 cut(s) 347, 595
BsrI ACTGG 5 cut(s) 31, 414, 568, 804, 881
BssECI CCNNGG 3 cut(s) 481, 823, 865
BssMI GATC 5 cut(s) 40, 101, 708, 973, 1081
BssNAI GTATAC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 2 cut(s) 823, 865
Bst1107I GTATAC 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 185, 424
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 198, 642, 1119
BstDEI CTNAG 3 cut(s) 210, 257, 269
BstDSI CCRYGG 2 cut(s) 823, 865
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 4 cut(s) 386, 452, 636, 1138
BstKTI GATC 5 cut(s) 43, 104, 711, 976, 1084
BstMAI GTCTC 2 cut(s) 19, 728
BstMBI GATC 5 cut(s) 40, 101, 708, 973, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 185, 206, 472, 596
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 4 cut(s) 105, 519, 591, 642
BstV1I GCAGC 5 cut(s) 358, 475, 553, 608, 840
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BstZ17I GTATAC 1 cut(s) 138
BsuI GTATCC 2 cut(s) 286, 421
BsuRI GGCC 3 cut(s) 152, 640, 805
BtgI CCRYGG 2 cut(s) 823, 865
BtsCI GGATG 4 cut(s) 386, 452, 636, 1138
BtsI GCAGTG 1 cut(s) 1154
BtsIMutI CAGTG 3 cut(s) 24, 388, 1154
BveI ACCTGC 2 cut(s) 347, 595
Cac8I GCNNGC 3 cut(s) 198, 642, 1119
CaiI CAGNNNCTG 1 cut(s) 887
Cfr13I GGNCC 6 cut(s) 151, 524, 566, 803, 878, 1042
Csp6I GTAC 3 cut(s) 30, 511, 558
CviAII CATG 4 cut(s) 145, 701, 824, 866
CviQI GTAC 3 cut(s) 30, 511, 558
DdeI CTNAG 3 cut(s) 210, 257, 269
DpnI GATC 5 cut(s) 42, 103, 710, 975, 1083
DpnII GATC 5 cut(s) 40, 101, 708, 973, 1081
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 823, 865
Eco32I GATATC 2 cut(s) 325, 778
Eco47I GGWCC 4 cut(s) 524, 566, 878, 1042
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 2 cut(s) 325, 778
EcoT14I CCWWGG 2 cut(s) 823, 865
EcoT22I ATGCAT 1 cut(s) 1129
ErhI CCWWGG 2 cut(s) 823, 865
FaeI CATG 4 cut(s) 148, 704, 827, 869
FaqI GGGAC 1 cut(s) 552
FatI CATG 4 cut(s) 144, 700, 823, 865
FauNDI CATATG 2 cut(s) 604, 1123
FblI GTMKAC 2 cut(s) 137, 697
Fnu4HI GCNGC 6 cut(s) 372, 464, 542, 553, 597, 829
FokI GGATG 4 cut(s) 373, 439, 643, 1145
Fsp4HI GCNGC 6 cut(s) 372, 464, 542, 553, 597, 829
FspBI CTAG 4 cut(s) 129, 167, 549, 977
GluI GCNGC 6 cut(s) 372, 464, 542, 553, 597, 829
GsaI CCCAGC 1 cut(s) 394
HaeIII GGCC 3 cut(s) 152, 640, 805
HapII CCGG 1 cut(s) 1040
Hin1II CATG 4 cut(s) 148, 704, 827, 869
HincII GTYRAC 2 cut(s) 313, 698
HindII GTYRAC 2 cut(s) 313, 698
HinfI GANTC 2 cut(s) 378, 995
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 3 cut(s) 155, 803, 1148
Hpy166II GTNNAC 3 cut(s) 138, 313, 698
Hpy188I TCNGA 5 cut(s) 19, 217, 280, 319, 1132
Hpy188III TCNNGA 5 cut(s) 435, 770, 977, 1040, 1085
Hpy8I GTNNAC 3 cut(s) 138, 313, 698
HpyAV CCTTC 6 cut(s) 229, 233, 525, 537, 782, 948
HpyCH4III ACNGT 2 cut(s) 185, 424
HpyCH4IV ACGT 1 cut(s) 841
HpyCH4V TGCA 9 cut(s) 107, 188, 386, 508, 644, 1031, 1121, 1127, 1159
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 206, 472, 596
HpyF3I CTNAG 3 cut(s) 210, 257, 269
HpySE526I ACGT 1 cut(s) 841
Hsp92II CATG 4 cut(s) 148, 704, 827, 869
Kpn2I TCCGGA 1 cut(s) 1039
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 5 cut(s) 40, 101, 708, 973, 1081
Lsp1109I GCAGC 5 cut(s) 358, 475, 553, 608, 840
LweI GCATC 6 cut(s) 208, 373, 395, 440, 1093, 1136
MaeI CTAG 4 cut(s) 129, 167, 549, 977
MaeII ACGT 1 cut(s) 841
MaeIII GTNAC 1 cut(s) 1148
MalI GATC 5 cut(s) 42, 103, 710, 975, 1083
MboI GATC 5 cut(s) 40, 101, 708, 973, 1081
MboII GAAGA 2 cut(s) 35, 926
MflI RGATCY 1 cut(s) 101
MluCI AATT 7 cut(s) 66, 83, 93, 156, 612, 751, 980
MmeI TCCRAC 1 cut(s) 42
Mph1103I ATGCAT 1 cut(s) 1129
MroI TCCGGA 1 cut(s) 1039
MseI TTAA 3 cut(s) 312, 611, 849
MslI CAYNNNNRTG 2 cut(s) 742, 870
MspA1I CMGCKG 1 cut(s) 831
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 4 cut(s) 185, 206, 472, 596
NcoI CCATGG 2 cut(s) 823, 865
NdeI CATATG 2 cut(s) 604, 1123
NdeII GATC 5 cut(s) 40, 101, 708, 973, 1081
NlaIII CATG 4 cut(s) 148, 704, 827, 869
NlaIV GGNNCC 4 cut(s) 568, 804, 821, 1044
NmuCI GTSAC 1 cut(s) 1148
NsiI ATGCAT 1 cut(s) 1129
NspI RCATGY 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 378, 995
PflMI CCANNNNNTGG 2 cut(s) 482, 887
PkrI GCNGC 6 cut(s) 373, 465, 543, 554, 598, 830
PpuMI RGGWCCY 1 cut(s) 524
PsiI TTATAA 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 568, 804, 821, 1044
PspPI GGNCC 6 cut(s) 151, 524, 566, 803, 878, 1042
PspPPI RGGWCCY 1 cut(s) 524
PstI CTGCAG 2 cut(s) 109, 646
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 3 cut(s) 31, 512, 559
RsaNI GTAC 3 cut(s) 30, 511, 558
RseI CAYNNNNRTG 2 cut(s) 742, 870
SalI GTCGAC 1 cut(s) 696
SaqAI TTAA 3 cut(s) 312, 611, 849
SatI GCNGC 6 cut(s) 372, 464, 542, 553, 597, 829
Sau3AI GATC 5 cut(s) 40, 101, 708, 973, 1081
Sau96I GGNCC 6 cut(s) 151, 524, 566, 803, 878, 1042
ScaI AGTACT 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 483
SfaNI GCATC 6 cut(s) 208, 373, 395, 440, 1093, 1136
SfcI CTRYAG 4 cut(s) 105, 519, 591, 642
SinI GGWCC 4 cut(s) 524, 566, 878, 1042
SmiMI CAYNNNNRTG 2 cut(s) 742, 870
Sse9I AATT 7 cut(s) 66, 83, 93, 156, 612, 751, 980
SsiI CCGC 2 cut(s) 553, 831
SspMI CTAG 4 cut(s) 129, 167, 549, 977
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 823, 865
TaaI ACNGT 2 cut(s) 185, 424
TaiI ACGT 1 cut(s) 844
TaqI TCGA 3 cut(s) 436, 697, 898
TasI AATT 7 cut(s) 66, 83, 93, 156, 612, 751, 980
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 2 cut(s) 378, 995
Tru1I TTAA 3 cut(s) 312, 611, 849
Tru9I TTAA 3 cut(s) 312, 611, 849
TscAI CASTG 3 cut(s) 31, 388, 1161
TseFI GTSAC 1 cut(s) 1148
TseI GCWGC 5 cut(s) 371, 463, 541, 596, 828
Tsp45I GTSAC 1 cut(s) 1148
TspDTI ATGAA 4 cut(s) 149, 300, 512, 675
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 3 cut(s) 31, 388, 1161
Van91I CCANNNNNTGG 2 cut(s) 482, 887
VpaK11BI GGWCC 4 cut(s) 524, 566, 878, 1042
XagI CCTNNNNNAGG 1 cut(s) 519
XapI RAATTY 3 cut(s) 66, 156, 751
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XmiI GTMKAC 2 cut(s) 137, 697
XspI CTAG 4 cut(s) 129, 167, 549, 977
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.