Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Forward (+)

1104720 .. 1109664

Gene Structure 4945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G015500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGAAAACAATGGCTTTCCAGAAGATCAAGGTGGCCAACCCCATCGTGGAGATGGACGGAGATGAAATGACGCGAGTTTTCTGGAAATCCATAAAGGATAAGCTTATTTTACCCTTTTTGGAATTGGACATCAAGTACTTTGACCTTGGTCTTCCTCATCGTGATGCCACTGATGATAAAGTTACTGTTGAAAGTGCAGAGGCTACTCTTAAGTACAATGTAGCAATCAAATGTGCAACTATCACTCCAGATGAAGGTCGTGTTAAGGAGTTTAACTTGAAGAGTATGTGGAGGAGTCCCAATGGCACTATTAGGAATATTTTGAATGGTACTGTTTTCAGAGAACCAATTCTTTGCAAAAACATCCCTCGCCTTATCCCAGGCTGGACAAAGCCAATATGCATTGGAAGACATGCTTTCGGTGATCAGTATCGAGCAACTGATGCTGTCATTAAAGGACCTGGGAAACTGAAATTGGTGTTTGTGCCAGACGGAAAGGATGAGAAAACAGAACTAGAGGTGTACAACTTCACAGGTGAGGGGGGAGTAGCATTGGCCATGTACAACACTGATGAGTCCATCCGTGCTTTTGCAGAGGCTTCCATGACCACTGCTTATGAGAAAAAGTGGCCTCTTTATCTTAGCACAAAGAACACTATTCTTAAGAAGTATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAAGCCAAGTGGAAGTCACAGTATGAGGCTGCTGGCATATGGTACGAGCACCGTCTCATTGATGATATGGTGGCTTATGCACTTAAAAGTGATGGTGGGTATGTTTGGGCATGCAAGAATTATGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGGGTTTGGCTCTCTTGGATTGATGACATCAGTACTGGTGTGCCCAGATGGAAAGACTATAGAAGCAGAAGCTGCCCACGGTACAGTTACTCGGCATTACAGGGTTCACCAGAAAGGAGGTGAAACCAGTACAAACAGCATAGCTTCTATCTTTGCTTGGACAAGAGGGCTTGCACACAGGGCAAAGTTGGATGACAATGCAAAGCTTTTGGATTTCACTCAGAAACTGGAAGAAGCTTGCATTGGAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCACTCATTATTCATGGACCTAAGCTTGCTAGGAACCACTACTTGAATACGGAAGAGTTCATTGAAGCTGTGGCAGAGGAACTCAGAGCAAGGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

416

Amino Acids

46.75

Weight (kDa)

6.54

Isoelectric Point (pI)

21.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	76
AclWI	GGATC	1 cut(s)	1149
AcoI	YGGCCR	2 cut(s)	36, 558
AfaI	GTAC	9 cut(s)	140, 218, 334, 527, 566, 755, 900, 949, 997
AfiI	CCNNNNNNNGG	2 cut(s)	49, 257
AflII	CTTAAG	2 cut(s)	212, 665
AgsI	TTSAA	7 cut(s)	194, 283, 328, 688, 701, 1192, 1211
AjnI	CCWGG	2 cut(s)	382, 463
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 493, 1092, 1124
AluBI	AGCT	8 cut(s)	106, 863, 938, 1010, 1072, 1103, 1171, 1214
AluI	AGCT	8 cut(s)	106, 863, 938, 1010, 1072, 1103, 1171, 1214
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	1 cut(s)	1149
AlwNI	CAGNNNCTG	2 cut(s)	938, 1093
AoxI	GGCC	3 cut(s)	36, 558, 632
ApeKI	GCWGC	2 cut(s)	740, 938
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	461, 1163
AsuHPI	GGTGA	4 cut(s)	437, 551, 965, 998
AvaII	GGWCC	2 cut(s)	461, 1163
BaeGI	GKGCMC	1 cut(s)	911
BalI	TGGCCA	2 cut(s)	38, 560
BbsI	GAAGAC	2 cut(s)	146, 418
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	2 cut(s)	727, 925
BccI	CCATC	7 cut(s)	49, 53, 590, 671, 797, 830, 908
BciT130I	CCWGG	2 cut(s)	384, 465
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	2 cut(s)	518, 1176
BfmI	CTRYAG	1 cut(s)	924
BfrI	CTTAAG	2 cut(s)	212, 665
BisI	GCNGC	2 cut(s)	741, 939
BlsI	GCNGC	2 cut(s)	742, 940
BmcAI	AGTACT	2 cut(s)	140, 900
Bme1390I	CCNGG	2 cut(s)	384, 465
Bme18I	GGWCC	2 cut(s)	461, 1163
BmgT120I	GGNCC	2 cut(s)	461, 1163
BmiI	GGNNCC	1 cut(s)	1181
BmrFI	CCNGG	2 cut(s)	384, 465
BmsI	GCATC	2 cut(s)	157, 436
BoxI	GACNNNNGTC	1 cut(s)	150
BpiI	GAAGAC	2 cut(s)	146, 418
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	1167
BpuEI	CTTGAG	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	5 cut(s)	148, 382, 464, 943, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 257
Bse1I	ACTGG	3 cut(s)	906, 993, 1098
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	384, 465
BseDI	CCNNGG	5 cut(s)	148, 382, 464, 943, 1137
BseGI	GGATG	4 cut(s)	366, 508, 582, 1063
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	49, 257
BseMII	CTCAG	2 cut(s)	1100, 1243
BseNI	ACTGG	3 cut(s)	906, 993, 1098
BseRI	GAGGAG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	911
BseXI	GCAGC	2 cut(s)	727, 925
BsgI	GTGCAG	2 cut(s)	219, 866
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	38, 560, 634
BsiHKAI	GWGCWC	1 cut(s)	762
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	49, 257
BsmAI	GTCTC	1 cut(s)	770
BsmBI	CGTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	38, 560, 634
Bsp1286I	GDGCHC	2 cut(s)	762, 911
Bsp1407I	TGTACA	2 cut(s)	525, 564
Bsp143I	GATC	3 cut(s)	27, 427, 1141
BspANI	GGCC	3 cut(s)	38, 560, 634
BspCNI	CTCAG	2 cut(s)	1099, 1242
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	1181
BspPI	GGATC	1 cut(s)	1149
BspTI	CTTAAG	2 cut(s)	212, 665
BsrGI	TGTACA	2 cut(s)	525, 564
BsrI	ACTGG	3 cut(s)	906, 993, 1098
BssECI	CCNNGG	5 cut(s)	148, 382, 464, 943, 1137
BssMI	GATC	3 cut(s)	27, 427, 1141
BssT1I	CCWWGG	2 cut(s)	148, 1137
Bst2UI	CCWGG	2 cut(s)	384, 465
Bst4CI	ACNGT	7 cut(s)	190, 337, 732, 764, 947, 952, 1117
Bst6I	CTCTTC	2 cut(s)	278, 1194
BstAFI	CTTAAG	2 cut(s)	212, 665
BstAPI	GCANNNNNTGC	2 cut(s)	446, 938
BstAUI	TGTACA	2 cut(s)	525, 564
BstC8I	GCNNGC	5 cut(s)	745, 823, 1038, 1105, 1173
BstDEI	CTNAG	5 cut(s)	644, 859, 1086, 1167, 1229
BstDSI	CCRYGG	1 cut(s)	943
BstF5I	GGATG	4 cut(s)	366, 508, 582, 1063
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	3 cut(s)	30, 430, 1144
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	3 cut(s)	27, 427, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 938, 1046
BstNI	CCWGG	2 cut(s)	384, 465
BstNSI	RCATGY	2 cut(s)	419, 825
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	382, 463
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	911
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	727, 925
BstV2I	GAAGAC	2 cut(s)	146, 418
BstX2I	RGATCY	1 cut(s)	1141
BstYI	RGATCY	1 cut(s)	1141
BsuRI	GGCC	3 cut(s)	38, 560, 634
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	4 cut(s)	366, 508, 582, 1063
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	171, 570, 612
Cac8I	GCNNGC	5 cut(s)	745, 823, 1038, 1105, 1173
CaiI	CAGNNNCTG	2 cut(s)	938, 1093
Cfr13I	GGNCC	2 cut(s)	461, 1163
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	9 cut(s)	139, 217, 333, 526, 565, 754, 899, 948, 996
CviAII	CATG	5 cut(s)	416, 562, 607, 822, 1160
CviQI	GTAC	9 cut(s)	139, 217, 333, 526, 565, 754, 899, 948, 996
DdeI	CTNAG	5 cut(s)	644, 859, 1086, 1167, 1229
DpnI	GATC	3 cut(s)	29, 429, 1143
DpnII	GATC	3 cut(s)	27, 427, 1141
EaeI	YGGCCR	2 cut(s)	36, 558
Eam1104I	CTCTTC	2 cut(s)	278, 1194
EarI	CTCTTC	2 cut(s)	278, 1194
Eco130I	CCWWGG	2 cut(s)	148, 1137
Eco47I	GGWCC	2 cut(s)	461, 1163
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	382, 463
EcoT14I	CCWWGG	2 cut(s)	148, 1137
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	2 cut(s)	148, 1137
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	5 cut(s)	419, 565, 610, 825, 1163
FalI	AAGNNNNNCTT	3 cut(s)	403, 435, 1228
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	5 cut(s)	415, 561, 606, 821, 1159
FauNDI	CATATG	1 cut(s)	749
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	741, 939
FokI	GGATG	4 cut(s)	353, 515, 569, 1070
Fsp4HI	GCNGC	2 cut(s)	741, 939
FspBI	CTAG	2 cut(s)	518, 1176
GluI	GCNGC	2 cut(s)	741, 939
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	38, 560, 634
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	5 cut(s)	419, 565, 610, 825, 1163
HindIII	AAGCTT	4 cut(s)	104, 1070, 1101, 1169
HinfI	GANTC	4 cut(s)	298, 578, 684, 1121
HphI	GGTGA	4 cut(s)	437, 551, 965, 998
Hpy166II	GTNNAC	2 cut(s)	526, 973
Hpy188I	TCNGA	3 cut(s)	344, 1089, 1232
Hpy188III	TCNNGA	6 cut(s)	22, 85, 164, 251, 701, 1245
Hpy8I	GTNNAC	2 cut(s)	526, 973
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	7 cut(s)	190, 337, 732, 764, 947, 952, 1117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 938, 1046
HpyF3I	CTNAG	5 cut(s)	644, 859, 1086, 1167, 1229
Hsp92II	CATG	5 cut(s)	419, 565, 610, 825, 1163
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	27, 427, 1141
Lsp1109I	GCAGC	2 cut(s)	727, 925
LweI	GCATC	2 cut(s)	157, 436
MaeI	CTAG	2 cut(s)	518, 1176
MaeIII	GTNAC	3 cut(s)	184, 726, 952
MalI	GATC	3 cut(s)	29, 429, 1143
MboI	GATC	3 cut(s)	27, 427, 1141
MboII	GAAGA	7 cut(s)	37, 146, 295, 423, 693, 1109, 1211
MflI	RGATCY	1 cut(s)	1141
MhlI	GDGCHC	2 cut(s)	762, 911
MlsI	TGGCCA	2 cut(s)	38, 560
MluCI	AATT	4 cut(s)	125, 351, 476, 829
MluNI	TGGCCA	2 cut(s)	38, 560
MlyI	GAGTC	2 cut(s)	307, 587
MmeI	TCCRAC	1 cut(s)	1035
Mox20I	TGGCCA	2 cut(s)	38, 560
Mph1103I	ATGCAT	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	351
MscI	TGGCCA	2 cut(s)	38, 560
MseI	TTAA	6 cut(s)	213, 267, 276, 456, 666, 795
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	2 cut(s)	38, 560
MspCI	CTTAAG	2 cut(s)	212, 665
MspR9I	CCNGG	2 cut(s)	384, 465
MvaI	CCWGG	2 cut(s)	384, 465
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	446, 938, 1046
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	3 cut(s)	27, 427, 1141
NlaIII	CATG	5 cut(s)	419, 565, 610, 825, 1163
NlaIV	GGNNCC	1 cut(s)	1181
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	1 cut(s)	726
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	2 cut(s)	419, 825
PaeI	GCATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	684, 1121
PkrI	GCNGC	2 cut(s)	742, 940
PleI	GAGTC	2 cut(s)	306, 586
PpsI	GAGTC	2 cut(s)	306, 586
PpuMI	RGGWCCY	1 cut(s)	461
PshAI	GACNNNNGTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	382, 463
PspGI	CCWGG	2 cut(s)	382, 463
PspN4I	GGNNCC	1 cut(s)	1181
PspPI	GGNCC	2 cut(s)	461, 1163
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	2 cut(s)	938, 1093
PsuI	RGATCY	1 cut(s)	1141
RsaI	GTAC	9 cut(s)	140, 218, 334, 527, 566, 755, 900, 949, 997
RsaNI	GTAC	9 cut(s)	139, 217, 333, 526, 565, 754, 899, 948, 996
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	6 cut(s)	213, 267, 276, 456, 666, 795
SatI	GCNGC	2 cut(s)	741, 939
Sau3AI	GATC	3 cut(s)	27, 427, 1141
Sau96I	GGNCC	2 cut(s)	461, 1163
ScaI	AGTACT	2 cut(s)	140, 900
SchI	GAGTC	2 cut(s)	307, 587
ScrFI	CCNGG	2 cut(s)	384, 465
SduI	GDGCHC	2 cut(s)	762, 911
SfaNI	GCATC	2 cut(s)	157, 436
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	2 cut(s)	461, 1163
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	3 cut(s)	212, 665, 864
SmoI	CTYRAG	3 cut(s)	212, 665, 864
SphI	GCATGC	1 cut(s)	825
Sse9I	AATT	4 cut(s)	125, 351, 476, 829
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	518, 1176
StyD4I	CCNGG	2 cut(s)	382, 463
StyI	CCWWGG	2 cut(s)	148, 1137
TaaI	ACNGT	7 cut(s)	190, 337, 732, 764, 947, 952, 1117
TaqI	TCGA	1 cut(s)	436
TasI	AATT	4 cut(s)	125, 351, 476, 829
TatI	WGTACW	6 cut(s)	138, 216, 525, 564, 898, 995
TfiI	GAWTC	2 cut(s)	684, 1121
Tru1I	TTAA	6 cut(s)	213, 267, 276, 456, 666, 795
Tru9I	TTAA	6 cut(s)	213, 267, 276, 456, 666, 795
TscAI	CASTG	3 cut(s)	178, 577, 619
TseFI	GTSAC	1 cut(s)	726
TseI	GCWGC	2 cut(s)	740, 938
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	5 cut(s)	81, 270, 726, 1148, 1195
TspGWI	ACGGA	4 cut(s)	75, 510, 575, 1211
TspRI	CASTG	3 cut(s)	178, 577, 619
Vha464I	CTTAAG	2 cut(s)	212, 665
VpaK11BI	GGWCC	2 cut(s)	461, 1163
XceI	RCATGY	2 cut(s)	419, 825
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 52
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	518, 1176
ZrmI	AGTACT	2 cut(s)	140, 900
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.