Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Reverse (-)

19164370 .. 19166520

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGGAGTATAACTTGAAGCAACTGTGGAGGAGTCCCAATGTGACTATTAGGAACATTTTGAATGGAACTGTTTTCAGAGAACCGATTATTTGCAAGAACGTTCCTCGACTTATCCCAGGCTGGACAAAGGCAATATGCATCGGAAGACATGCTTTCGGTGATCAATATCGAGCAGTTGATTTAGTCATCAAAGGATCAGGGAAACTGAAATTGTTGTTTGATGGAAAGGATGAGAAGACCGAACTGGAAGTGTACAACTTTACCGGAGAAGGGGGAGTAGCACTTGCTATGTGCAACATTGTTGAGTCAATCCGTGCTTTTGCAGAGGCTTCAATGACCAGAGCTTATGAGAAAAAATGGCCTCTTTATCTTAGCACAAAAAATACTGTTCTTAAAAAGTATGATGGAAGATTCAAGGACATATTTCAAGAAGTATACGAAGCCAAGTGGAAGTCCAAGTATGAAGATGCTGGCATATGGTATGAACATCGTCTCATCGATGACATGGTGGCTTATGCAATTAAAAGTGAAGGTGGTTTTGTTTGGGCATGCAAGAATTATGATGGAGATGTACAAAGTGACTTCTTAGCCCAAGGTTTTGGATCTCTTGGATTGATGACTTCAGTACTGGTGTGCCCAGATGGAAAGACTATAGAAGCTGAAGCTGCCCATGGTACAGTTACTCGCCATTATAGAGTCCACCAAAATGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATTTTTGCTTGGACAAGAGGGCTTGCACACAGAGCAAAGTTGGATGACAATGCTAAACTGTTGGATTTCACTCGGAAGCTGGAAGCAGCTTGTATTGGAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCGCTAAATGTACATGGACCTAAACTTGCTAGGAACCACTACTTGAACACGGAAGATTTCATTGATGCCGTTGCAGCAGAACTAAGAGCAAAGCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

326

Amino Acids

36.55

Weight (kDa)

8.71

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	5 - 316	3.2e-61	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	3 cut(s)	205, 613, 879
AcuI	CTGAAG	2 cut(s)	609, 684
AfaI	GTAC	5 cut(s)	257, 576, 630, 679, 888
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	19, 64, 336, 418, 431, 922
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	7 cut(s)	347, 662, 668, 740, 823, 833, 970
AluI	AGCT	7 cut(s)	347, 662, 668, 740, 823, 833, 970
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	205, 613, 879
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	3 cut(s)	668, 830, 950
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	1 cut(s)	893
AsuHPI	GGTGA	2 cut(s)	173, 728
AvaII	GGWCC	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	641
BbsI	GAAGAC	2 cut(s)	154, 245
BbvI	GCAGC	3 cut(s)	655, 842, 962
BccI	CCATC	4 cut(s)	218, 401, 560, 638
BceAI	ACGGC	1 cut(s)	929
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	3 cut(s)	669, 831, 951
BlsI	GCNGC	3 cut(s)	670, 832, 952
BmcAI	AGTACT	1 cut(s)	630
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	893
BmgT120I	GGNCC	1 cut(s)	893
BmiI	GGNNCC	1 cut(s)	911
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	150, 460, 931
BpiI	GAAGAC	2 cut(s)	154, 245
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	4 cut(s)	118, 595, 673, 867
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	252, 636
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	118, 595, 673, 867
BseGI	GGATG	2 cut(s)	238, 793
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	252, 636
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	3 cut(s)	655, 842, 962
BshFI	GGCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp1407I	TGTACA	3 cut(s)	255, 574, 886
Bsp143I	GATC	4 cut(s)	163, 197, 605, 871
Bsp19I	CCATGG	1 cut(s)	673
BspANI	GGCC	1 cut(s)	364
BspDI	ATCGAT	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	911
BspPI	GGATC	3 cut(s)	205, 613, 879
BsrGI	TGTACA	3 cut(s)	255, 574, 886
BsrI	ACTGG	2 cut(s)	252, 636
BssECI	CCNNGG	4 cut(s)	118, 595, 673, 867
BssMI	GATC	4 cut(s)	163, 197, 605, 871
BssNAI	GTATAC	1 cut(s)	439
BssT1I	CCWWGG	3 cut(s)	595, 673, 867
Bst1107I	GTATAC	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	6 cut(s)	27, 73, 391, 682, 804, 847
BstAUI	TGTACA	3 cut(s)	255, 574, 886
BstC8I	GCNNGC	3 cut(s)	475, 553, 768
BstDEI	CTNAG	3 cut(s)	374, 589, 959
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	2 cut(s)	238, 793
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	4 cut(s)	166, 200, 608, 874
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	4 cut(s)	163, 197, 605, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	668, 732, 776, 950
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	2 cut(s)	155, 555
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	641
BstV1I	GCAGC	3 cut(s)	655, 842, 962
BstV2I	GAAGAC	2 cut(s)	154, 245
BstX2I	RGATCY	2 cut(s)	605, 871
BstXI	CCANNNNNNTGG	2 cut(s)	602, 710
BstYI	RGATCY	2 cut(s)	605, 871
BstZ17I	GTATAC	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	364
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	238, 793
Cac8I	GCNNGC	3 cut(s)	475, 553, 768
CfoI	GCGC	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	893
ClaI	ATCGAT	1 cut(s)	501
Csp6I	GTAC	5 cut(s)	256, 575, 629, 678, 887
CviAII	CATG	5 cut(s)	152, 508, 552, 674, 890
CviQI	GTAC	5 cut(s)	256, 575, 629, 678, 887
DdeI	CTNAG	3 cut(s)	374, 589, 959
DpnI	GATC	4 cut(s)	165, 199, 607, 873
DpnII	GATC	4 cut(s)	163, 197, 605, 871
Eco130I	CCWWGG	3 cut(s)	595, 673, 867
Eco47I	GGWCC	1 cut(s)	893
Eco57I	CTGAAG	2 cut(s)	609, 684
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	3 cut(s)	595, 673, 867
EcoT22I	ATGCAT	1 cut(s)	143
ErhI	CCWWGG	3 cut(s)	595, 673, 867
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	5 cut(s)	155, 511, 555, 677, 893
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	5 cut(s)	151, 507, 551, 673, 889
FauNDI	CATATG	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	669, 831, 951
FokI	GGATG	2 cut(s)	245, 800
Fsp4HI	GCNGC	3 cut(s)	669, 831, 951
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	1 cut(s)	879
GluI	GCNGC	3 cut(s)	669, 831, 951
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	880
Hin1II	CATG	5 cut(s)	155, 511, 555, 677, 893
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HindIII	AAGCTT	1 cut(s)	968
HinfI	GANTC	5 cut(s)	34, 308, 414, 699, 851
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	173, 728
Hpy166II	GTNNAC	3 cut(s)	256, 439, 703
Hpy188I	TCNGA	3 cut(s)	80, 146, 819
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	3 cut(s)	256, 439, 703
HpyAV	CCTTC	2 cut(s)	266, 527
HpyCH4III	ACNGT	6 cut(s)	27, 73, 391, 682, 804, 847
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	8 cut(s)	96, 141, 297, 326, 521, 555, 770, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	668, 732, 776, 950
HpyF3I	CTNAG	3 cut(s)	374, 589, 959
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	155, 511, 555, 677, 893
HspAI	GCGC	1 cut(s)	878
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 197, 605, 871
Lsp1109I	GCAGC	3 cut(s)	655, 842, 962
LweI	GCATC	3 cut(s)	150, 460, 931
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	43, 581, 682
MalI	GATC	4 cut(s)	165, 199, 607, 873
MboI	GATC	4 cut(s)	163, 197, 605, 871
MboII	GAAGA	5 cut(s)	159, 250, 423, 479, 941
MflI	RGATCY	2 cut(s)	605, 871
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	3 cut(s)	212, 522, 559
MlyI	GAGTC	3 cut(s)	43, 317, 708
MmeI	TCCRAC	2 cut(s)	765, 786
MnlI	CCTC	6 cut(s)	24, 117, 322, 375, 707, 755
Mph1103I	ATGCAT	1 cut(s)	143
MseI	TTAA	2 cut(s)	396, 525
MslI	CAYNNNNRTG	1 cut(s)	708
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	668, 732, 776, 950
NcoI	CCATGG	1 cut(s)	673
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	4 cut(s)	163, 197, 605, 871
NlaIII	CATG	5 cut(s)	155, 511, 555, 677, 893
NlaIV	GGNNCC	1 cut(s)	911
NmuCI	GTSAC	2 cut(s)	43, 581
NsiI	ATGCAT	1 cut(s)	143
NspI	RCATGY	2 cut(s)	155, 555
PaeI	GCATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	414, 851
PkrI	GCNGC	3 cut(s)	670, 832, 952
PleI	GAGTC	3 cut(s)	42, 316, 707
PpsI	GAGTC	3 cut(s)	42, 316, 707
Psp1406I	AACGTT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	911
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	605, 871
RsaI	GTAC	5 cut(s)	257, 576, 630, 679, 888
RsaNI	GTAC	5 cut(s)	256, 575, 629, 678, 887
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	396, 525
SatI	GCNGC	3 cut(s)	669, 831, 951
Sau3AI	GATC	4 cut(s)	163, 197, 605, 871
Sau96I	GGNCC	1 cut(s)	893
ScaI	AGTACT	1 cut(s)	630
SchI	GAGTC	3 cut(s)	43, 317, 708
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	3 cut(s)	150, 460, 931
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	893
SmiMI	CAYNNNNRTG	1 cut(s)	708
SphI	GCATGC	1 cut(s)	555
Sse9I	AATT	3 cut(s)	212, 522, 559
SspMI	CTAG	1 cut(s)	906
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	3 cut(s)	595, 673, 867
TaaI	ACNGT	6 cut(s)	27, 73, 391, 682, 804, 847
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	109, 172, 501
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	212, 522, 559
TatI	WGTACW	4 cut(s)	255, 574, 628, 886
TfiI	GAWTC	2 cut(s)	414, 851
Tru1I	TTAA	2 cut(s)	396, 525
Tru9I	TTAA	2 cut(s)	396, 525
TseFI	GTSAC	2 cut(s)	43, 581
TseI	GCWGC	3 cut(s)	668, 830, 950
Tsp45I	GTSAC	2 cut(s)	43, 581
TspDTI	ATGAA	4 cut(s)	17, 480, 501, 925
TspGWI	ACGGA	2 cut(s)	305, 941
VpaK11BI	GGWCC	1 cut(s)	893
XceI	RCATGY	2 cut(s)	155, 555
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	1 cut(s)	906
ZrmI	AGTACT	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.