AT1G65930

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24538886 .. 24542712
3827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65930.1

Sequence Viewer

Length: 1233 bp
ATGGCGTTTGAGAAGATCAAGGTGGCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACCAGGGTTATTTGGAAGTCTATCAAGGATAAGCTTATTACTCCTTTTGTGGAGTTGGATATCAAGTACTTCGACCTTGGTCTTCCTCACCGTGATGCTACGGATGACAAAGTTACTATTGAAAGTGCTGAAGCTACTAAGAAGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATGAAGGCCGTGTCACGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATCAGGAATATCCTGAATGGAACTGTATTTAGAGAGCCAATTATCTGCAAAAATGTTCCCAAGCTTGTCCCAGGCTGGACAAAGCCCATCTGCATTGGAAGGCATGCTTTTGGTGATCAGTACCGTGCCACTGATGCTGTAATCAAGGGACCAGGAAAACTGACTATGACCTTTGAGGGAAAAGATGGGAAAACTGAAACCGAAGTCTTTACATTTACTGGTGAAGGTGGTGTTGCTATGGCAATGTACAACACTGATGAGTCCATCCGTGCTTTTGCTGATGCATCGATGAACACTGCTTATGAGAAAAAGTGGCCACTTTACCTTAGCACAAAGAATACCATTCTTAAGAAATACGATGGCAGATTCAAAGACATCTTCCAAGAAGTCTATGAAGCCAGCTGGAAGTCGAAGTATGATGCTGCTGGAATCTGGTATGAACACCGTCTCATTGATGATATGGTGGCCTACGCTCTTAAGAGTGAGGGAGGCTATGTTTGGGCATGCAAAAACTATGATGGTGATGTCCAAAGTGATTTCTTGGCACAAGGATTCGGGTCACTTGGATTGATGACATCTGTTCTGGTCTGCCCAGATGGAAAGACGATTGAAGCTGAAGCGGCCCATGGAACTGTCACCCGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCAGCACAAACAGCATAGCCTCTATTTTTGCTTGGACTCGTGGACTTGCACACAGGGCTAAGTTAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTGGAAGCCGCTTGTGTTGGGACAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGCTCAAAGCTTTCGAGGGACACGTACCTGAACACAGAGGAGTTCATCGATGCAGTCGCTGCTGAGCTCAAAGAAAGACTCAATGCTTAA

Protein Analysis

410

Amino Acids

45.75

Weight (kDa)

6.13

Isoelectric Point (pI)

19.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 7 - 400 1.4e-83 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1102
AciI CCGC 2 cut(s) 920, 1083
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 3 cut(s) 210, 931, 936
AfaI GTAC 5 cut(s) 128, 206, 422, 548, 1169
AfiI CCNNNNNNNGG 2 cut(s) 245, 256
AflII CTTAAG 2 cut(s) 647, 776
AflIII ACRYGT 1 cut(s) 1164
AgsI TTSAA 4 cut(s) 182, 271, 670, 911
AjnI CCWGG 3 cut(s) 62, 370, 451
AluBI AGCT 8 cut(s) 94, 194, 364, 702, 914, 1075, 1153, 1210
AluI AGCT 8 cut(s) 94, 194, 364, 702, 914, 1075, 1153, 1210
Alw21I GWGCWC 1 cut(s) 1212
Alw26I GTCTC 2 cut(s) 752, 965
AlwNI CAGNNNCTG 1 cut(s) 1202
AoxI GGCC 4 cut(s) 247, 614, 765, 921
ApeKI GCWGC 2 cut(s) 722, 1202
ApoI RAATTY 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 297, 449, 922
AsuHPI GGTGA 7 cut(s) 62, 140, 425, 533, 833, 928, 980
AvaII GGWCC 2 cut(s) 297, 449
BalI TGGCCA 1 cut(s) 616
BanII GRGCYC 1 cut(s) 1212
BauI CACGAG 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 1212
BbvI GCAGC 2 cut(s) 709, 1189
BceAI ACGGC 2 cut(s) 234, 1159
BciT130I CCWGG 3 cut(s) 64, 372, 453
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 752, 965
BfrI CTTAAG 2 cut(s) 647, 776
BglII AGATCT 1 cut(s) 1123
BisI GCNGC 4 cut(s) 723, 921, 1083, 1203
BlpI GCTNAGC 1 cut(s) 1206
BlsI GCNGC 4 cut(s) 724, 922, 1084, 1204
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 64, 372, 453
Bme18I GGWCC 2 cut(s) 297, 449
BmgT120I GGNCC 3 cut(s) 297, 449, 922
BmiI GGNNCC 2 cut(s) 298, 450
BmrFI CCNGG 3 cut(s) 64, 372, 453
BmsI GCATC 6 cut(s) 145, 424, 571, 593, 709, 1183
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 1 cut(s) 1206
Bsa29I ATCGAT 2 cut(s) 587, 1191
BsaAI YACGTR 1 cut(s) 1167
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 4 cut(s) 63, 136, 370, 925
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 780, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 256
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 3 cut(s) 64, 372, 453
BseCI ATCGAT 2 cut(s) 587, 1191
BseDI CCNNGG 4 cut(s) 63, 136, 370, 925
BseGI GGATG 3 cut(s) 52, 169, 564
BseLI CCNNNNNNNGG 2 cut(s) 245, 256
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 2 cut(s) 1059, 1197
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 1196
BseXI GCAGC 2 cut(s) 709, 1189
BshFI GGCC 4 cut(s) 249, 616, 767, 923
BshVI ATCGAT 2 cut(s) 587, 1191
BsiHKAI GWGCWC 1 cut(s) 1212
BslFI GGGAC 5 cut(s) 310, 353, 462, 1108, 1175
BslI CCNNNNNNNGG 2 cut(s) 245, 256
BsmAI GTCTC 2 cut(s) 752, 965
BsmBI CGTCTC 1 cut(s) 752
BsmFI GGGAC 5 cut(s) 310, 353, 462, 1108, 1175
BsnI GGCC 4 cut(s) 249, 616, 767, 923
Bso31I GGTCTC 1 cut(s) 965
Bsp1286I GDGCHC 1 cut(s) 1212
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 15, 216, 415, 1123
Bsp1720I GCTNAGC 1 cut(s) 1206
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 2 cut(s) 920, 1083
BspANI GGCC 4 cut(s) 249, 616, 767, 923
BspCNI CTCAG 2 cut(s) 1060, 1198
BspDI ATCGAT 2 cut(s) 587, 1191
BspLI GGNNCC 2 cut(s) 298, 450
BspTI CTTAAG 2 cut(s) 647, 776
BspTNI GGTCTC 1 cut(s) 965
BsrDI GCAATG 1 cut(s) 549
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 4 cut(s) 63, 136, 370, 925
BssMI GATC 4 cut(s) 15, 216, 415, 1123
BssSI CACGAG 1 cut(s) 1011
BssT1I CCWWGG 2 cut(s) 136, 925
Bst2BI CACGAG 1 cut(s) 1011
Bst2UI CCWGG 3 cut(s) 64, 372, 453
Bst4CI ACNGT 6 cut(s) 152, 325, 425, 746, 934, 1099
BstAFI CTTAAG 2 cut(s) 647, 776
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 1167
BstC8I GCNNGC 3 cut(s) 405, 700, 805
BstDEI CTNAG 5 cut(s) 198, 626, 1032, 1068, 1206
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 3 cut(s) 52, 169, 564
BstKTI GATC 4 cut(s) 18, 219, 418, 1126
BstMAI GTCTC 2 cut(s) 752, 965
BstMBI GATC 4 cut(s) 15, 216, 415, 1123
BstMWI GCNNNNNNNGC 5 cut(s) 434, 920, 984, 1028, 1202
BstNI CCWGG 3 cut(s) 64, 372, 453
BstNSI RCATGY 2 cut(s) 407, 807
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 62, 370, 451
BstV1I GCAGC 2 cut(s) 709, 1189
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 1123
BstYI RGATCY 1 cut(s) 1123
Bsu15I ATCGAT 2 cut(s) 587, 1191
BsuRI GGCC 4 cut(s) 249, 616, 767, 923
BsuTUI ATCGAT 2 cut(s) 587, 1191
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 3 cut(s) 52, 169, 564
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 5 cut(s) 429, 552, 594, 1065, 1104
Cac8I GCNNGC 3 cut(s) 405, 700, 805
CaiI CAGNNNCTG 1 cut(s) 1202
Cfr13I GGNCC 3 cut(s) 297, 449, 922
ClaI ATCGAT 2 cut(s) 587, 1191
Csp6I GTAC 5 cut(s) 127, 205, 421, 547, 1168
CviAII CATG 3 cut(s) 404, 804, 926
CviQI GTAC 5 cut(s) 127, 205, 421, 547, 1168
DdeI CTNAG 5 cut(s) 198, 626, 1032, 1068, 1206
DpnI GATC 4 cut(s) 17, 218, 417, 1125
DpnII GATC 4 cut(s) 15, 216, 415, 1123
DrdI GACNNNNNNGTC 1 cut(s) 1102
DseDI GACNNNNNNGTC 1 cut(s) 1102
EaeI YGGCCR 1 cut(s) 614
Ecl136II GAGCTC 1 cut(s) 1210
Eco130I CCWWGG 2 cut(s) 136, 925
Eco24I GRGCYC 1 cut(s) 1212
Eco31I GGTCTC 1 cut(s) 965
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 297, 449
Eco53kI GAGCTC 1 cut(s) 1210
Eco57I CTGAAG 3 cut(s) 210, 931, 936
EcoICRI GAGCTC 1 cut(s) 1210
EcoRII CCWGG 3 cut(s) 62, 370, 451
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 136, 925
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 2 cut(s) 136, 925
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 3 cut(s) 407, 807, 929
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 5 cut(s) 310, 353, 462, 1108, 1175
FatI CATG 3 cut(s) 403, 803, 925
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 4 cut(s) 723, 921, 1083, 1203
FokI GGATG 3 cut(s) 59, 176, 551
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 4 cut(s) 723, 921, 1083, 1203
GluI GCNGC 4 cut(s) 723, 921, 1083, 1203
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 4 cut(s) 249, 616, 767, 923
Hin1II CATG 3 cut(s) 407, 807, 929
HindIII AAGCTT 3 cut(s) 92, 362, 1151
HinfI GANTC 7 cut(s) 560, 666, 729, 852, 1009, 1103, 1221
HphI GGTGA 7 cut(s) 62, 140, 425, 533, 833, 928, 980
Hpy166II GTNNAC 1 cut(s) 1016
Hpy188I TCNGA 1 cut(s) 960
Hpy188III TCNNGA 4 cut(s) 40, 239, 304, 313
Hpy8I GTNNAC 1 cut(s) 1016
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 239, 393, 518
HpyCH4III ACNGT 6 cut(s) 152, 325, 425, 746, 934, 1099
HpyCH4IV ACGT 1 cut(s) 1166
HpyCH4V TGCA 7 cut(s) 348, 393, 584, 807, 1022, 1130, 1196
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 920, 984, 1028, 1202
HpyF3I CTNAG 5 cut(s) 198, 626, 1032, 1068, 1206
HpySE526I ACGT 1 cut(s) 1166
Hsp92II CATG 3 cut(s) 407, 807, 929
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 15, 216, 415, 1123
Lsp1109I GCAGC 2 cut(s) 709, 1189
LweI GCATC 6 cut(s) 145, 424, 571, 593, 709, 1183
MaeII ACGT 1 cut(s) 1166
MaeIII GTNAC 5 cut(s) 172, 253, 858, 934, 941
MalI GATC 4 cut(s) 17, 218, 417, 1125
MboI GATC 4 cut(s) 15, 216, 415, 1123
MboII GAAGA 3 cut(s) 25, 134, 670
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 1 cut(s) 1212
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 2 cut(s) 260, 339
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 4 cut(s) 569, 1003, 1112, 1215
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 7 cut(s) 156, 469, 778, 782, 1003, 1152, 1174
Mox20I TGGCCA 1 cut(s) 616
Mph1103I ATGCAT 1 cut(s) 586
MscI TGGCCA 1 cut(s) 616
MseI TTAA 3 cut(s) 648, 777, 1231
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 616
MspA1I CMGCKG 1 cut(s) 702
MspCI CTTAAG 2 cut(s) 647, 776
MspR9I CCNGG 3 cut(s) 64, 372, 453
MvaI CCWGG 3 cut(s) 64, 372, 453
MwoI GCNNNNNNNGC 5 cut(s) 434, 920, 984, 1028, 1202
NcoI CCATGG 1 cut(s) 925
NdeII GATC 4 cut(s) 15, 216, 415, 1123
NlaIII CATG 3 cut(s) 407, 807, 929
NlaIV GGNNCC 2 cut(s) 298, 450
NmuCI GTSAC 4 cut(s) 253, 858, 934, 941
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 2 cut(s) 407, 807
PaeI GCATGC 2 cut(s) 407, 807
PcsI WCGNNNNNNNCGW 1 cut(s) 1163
PfeI GAWTC 3 cut(s) 666, 729, 852
PkrI GCNGC 4 cut(s) 724, 922, 1084, 1204
PleI GAGTC 4 cut(s) 568, 1003, 1111, 1215
PpsI GAGTC 4 cut(s) 568, 1003, 1111, 1215
Ppu21I YACGTR 1 cut(s) 1167
PshAI GACNNNNGTC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 1212
Psp6I CCWGG 3 cut(s) 62, 370, 451
PspGI CCWGG 3 cut(s) 62, 370, 451
PspN4I GGNNCC 2 cut(s) 298, 450
PspPI GGNCC 3 cut(s) 297, 449, 922
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 1123
PvuII CAGCTG 1 cut(s) 702
RsaI GTAC 5 cut(s) 128, 206, 422, 548, 1169
RsaNI GTAC 5 cut(s) 127, 205, 421, 547, 1168
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 1212
SaqAI TTAA 3 cut(s) 648, 777, 1231
SatI GCNGC 4 cut(s) 723, 921, 1083, 1203
Sau3AI GATC 4 cut(s) 15, 216, 415, 1123
Sau96I GGNCC 3 cut(s) 297, 449, 922
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 4 cut(s) 569, 1003, 1112, 1215
ScrFI CCNGG 3 cut(s) 64, 372, 453
SduI GDGCHC 1 cut(s) 1212
SfaNI GCATC 6 cut(s) 145, 424, 571, 593, 709, 1183
SinI GGWCC 2 cut(s) 297, 449
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 647, 776
SmoI CTYRAG 2 cut(s) 647, 776
SphI GCATGC 2 cut(s) 407, 807
Sse9I AATT 2 cut(s) 260, 339
SsiI CCGC 2 cut(s) 920, 1083
SstI GAGCTC 1 cut(s) 1212
StyD4I CCNGG 3 cut(s) 62, 370, 451
StyI CCWWGG 2 cut(s) 136, 925
TaaI ACNGT 6 cut(s) 152, 325, 425, 746, 934, 1099
TaiI ACGT 1 cut(s) 1169
TaqI TCGA 6 cut(s) 39, 132, 587, 710, 1157, 1191
TasI AATT 2 cut(s) 260, 339
TatI WGTACW 3 cut(s) 126, 204, 546
TauI GCSGC 2 cut(s) 923, 1085
TfiI GAWTC 3 cut(s) 666, 729, 852
Tru1I TTAA 3 cut(s) 648, 777, 1231
Tru9I TTAA 3 cut(s) 648, 777, 1231
TscAI CASTG 5 cut(s) 436, 559, 601, 1072, 1104
TseFI GTSAC 4 cut(s) 253, 858, 934, 941
TseI GCWGC 2 cut(s) 722, 1202
Tsp45I GTSAC 4 cut(s) 253, 858, 934, 941
TspDTI ATGAA 7 cut(s) 69, 258, 605, 708, 753, 944, 1177
TspGWI ACGGA 3 cut(s) 176, 272, 557
TspRI CASTG 5 cut(s) 436, 559, 601, 1072, 1104
Vha464I CTTAAG 2 cut(s) 647, 776
VpaK11BI GGWCC 2 cut(s) 297, 449
XapI RAATTY 1 cut(s) 260
XceI RCATGY 2 cut(s) 407, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.