Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Reverse (-)

14614761 .. 14618050

Gene Structure 3290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGTTCGAGAAGATCAAGGTCGCTAACCCCATCGTCGAGATGGACGTCTTTTTTTTCAAGTCATGCTATGATAGCCATGCAAACATACTTGATTCTTGGCAACTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTACTCACCGTGATGCCACTGATGATAAAGTTACCGTTGAAAGTGCAGAGGCTACTCTTAAGTACGGCTGCCGGCTTTCTTCAGGTACTGTTTTCAGAGAACCGATTCTTTGCAGGAACATTCCTCGCCTAATCCCAGGTTGGACGAAGCCAATATGCATTGGAAGACATGCTTTCGGTGATCAATATCGAGCCACTGATACAGTTATCAAAGGACCTGGGAAACTGAAATTGCTGTTTGTTCCAGAAGGAAAGGATGAGAAGACCGAACTGGAAGTGTATAACTTTACAGGGGAAGGTGGAGTAGCAATTGCCATGTACAACACCGATGAGTCAATCCGTGCTTTTGCAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGTGGCCTCTTTATCTTAGCACAAAAAACACTATTCTTAAGAAGTATGATGGAAGGTATGAACATCGTCTCATTGATGATATGGTGGCTTATGCACTTAAAAGTGAAGGTGGTTATGTCTGGGCATGCAAGAATTATGATGGAGATGTGCAAAGTGATTTCTTAGCTCAAGGTTTTGGATCTCTTGGATTGATGACATCAGTACTGGTGTGCCCAGATGGAAAGACCATAGAAGCTGAAGCTGCTCATGGAACAGTTACTCGGCATTATAGAGTTCACCAGAAAGGTGGTGAAACCAGCACAAACAGCATAGCTTCAATTTTTGCCTGGACAAGAGGGCTTGCACACAGGGCAAAGTTGGATGACAATGCTAAATTGTTGGATTTCACTCAGAAGCTGGAAGAAGCATGTATTGGAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCACTAATTCTTCATGGACCTAAGCTTGCTAGGAACCACTACTTGAACACGGAGGAGTTCATTGATGCCGTGGCAGCAGAACTGAAAGCAAAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

362

Amino Acids

40.32

Weight (kDa)

6.09

Isoelectric Point (pI)

23.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	81 - 352	1.1e-48	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	721, 987
AcuI	CTGAAG	2 cut(s)	219, 792
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	5 cut(s)	140, 218, 241, 473, 738
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflII	CTTAAG	2 cut(s)	212, 572
AgsI	TTSAA	4 cut(s)	61, 194, 852, 1030
AjnI	CCWGG	3 cut(s)	289, 370, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	930, 962
AluBI	AGCT	9 cut(s)	509, 524, 701, 770, 776, 848, 931, 1009, 1078
AluI	AGCT	9 cut(s)	509, 524, 701, 770, 776, 848, 931, 1009, 1078
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	721, 987
AlwNI	CAGNNNCTG	2 cut(s)	242, 931
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	222, 776, 1058
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	368, 1001
AsuHPI	GGTGA	4 cut(s)	152, 344, 803, 836
AvaII	GGWCC	2 cut(s)	368, 1001
BaeGI	GKGCMC	1 cut(s)	749
BbsI	GAAGAC	2 cut(s)	325, 422
BbvI	GCAGC	3 cut(s)	209, 763, 1070
BccI	CCATC	5 cut(s)	37, 41, 578, 668, 746
BceAI	ACGGC	2 cut(s)	235, 1037
BciT130I	CCWGG	3 cut(s)	291, 372, 862
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	1 cut(s)	1014
BfrI	CTTAAG	2 cut(s)	212, 572
BisI	GCNGC	3 cut(s)	223, 777, 1059
BlsI	GCNGC	3 cut(s)	224, 778, 1060
BmcAI	AGTACT	2 cut(s)	140, 738
Bme1390I	CCNGG	3 cut(s)	291, 372, 862
Bme18I	GGWCC	2 cut(s)	368, 1001
BmgT120I	GGNCC	2 cut(s)	368, 1001
BmiI	GGNNCC	1 cut(s)	1019
BmrFI	CCNGG	3 cut(s)	291, 372, 862
BmsI	GCATC	2 cut(s)	157, 1039
BoxI	GACNNNNGTC	1 cut(s)	150
BpiI	GAAGAC	2 cut(s)	325, 422
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	5 cut(s)	148, 289, 371, 975, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	429, 744
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	3 cut(s)	291, 372, 862
BseDI	CCNNGG	5 cut(s)	148, 289, 371, 975, 1053
BseGI	GGATG	2 cut(s)	415, 901
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	938
BseNI	ACTGG	2 cut(s)	429, 744
BseRI	GAGGAG	1 cut(s)	1052
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	3 cut(s)	209, 763, 1070
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	608
BsmBI	CGTCTC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	15, 334, 713, 979
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	937
BspLI	GGNNCC	1 cut(s)	1019
BspPI	GGATC	2 cut(s)	721, 987
BspTI	CTTAAG	2 cut(s)	212, 572
BsrFI	RCCGGY	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	429, 744
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	5 cut(s)	148, 289, 371, 975, 1053
BssMI	GATC	4 cut(s)	15, 334, 713, 979
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	148, 975
Bst2UI	CCWGG	3 cut(s)	291, 372, 862
Bst4CI	ACNGT	6 cut(s)	164, 190, 244, 358, 790, 955
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	2 cut(s)	212, 572
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	4 cut(s)	227, 661, 876, 1011
BstDEI	CTNAG	4 cut(s)	551, 697, 924, 1005
BstDSI	CCRYGG	1 cut(s)	1053
BstF5I	GGATG	2 cut(s)	415, 901
BstKTI	GATC	4 cut(s)	18, 337, 716, 982
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	15, 334, 713, 979
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 776, 840, 884, 1058
BstNI	CCWGG	3 cut(s)	291, 372, 862
BstNSI	RCATGY	3 cut(s)	326, 663, 945
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSCI	CCNGG	3 cut(s)	289, 370, 860
BstSLI	GKGCMC	1 cut(s)	749
BstV1I	GCAGC	3 cut(s)	209, 763, 1070
BstV2I	GAAGAC	2 cut(s)	325, 422
BstX2I	RGATCY	2 cut(s)	713, 979
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	713, 979
BsuRI	GGCC	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	1053
BtsCI	GGATG	2 cut(s)	415, 901
BtsIMutI	CAGTG	2 cut(s)	171, 348
Cac8I	GCNNGC	4 cut(s)	227, 661, 876, 1011
CaiI	CAGNNNCTG	2 cut(s)	242, 931
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	368, 1001
Csp6I	GTAC	5 cut(s)	139, 217, 240, 472, 737
CviAII	CATG	8 cut(s)	66, 80, 323, 469, 660, 782, 942, 998
CviQI	GTAC	5 cut(s)	139, 217, 240, 472, 737
DdeI	CTNAG	4 cut(s)	551, 697, 924, 1005
DpnI	GATC	4 cut(s)	17, 336, 715, 981
DpnII	GATC	4 cut(s)	15, 334, 713, 979
Eco130I	CCWWGG	2 cut(s)	148, 975
Eco47I	GGWCC	2 cut(s)	368, 1001
Eco57I	CTGAAG	2 cut(s)	219, 792
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	3 cut(s)	289, 370, 860
EcoT14I	CCWWGG	2 cut(s)	148, 975
EcoT22I	ATGCAT	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	148, 975
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	8 cut(s)	69, 83, 326, 472, 663, 785, 945, 1001
FalI	AAGNNNNNCTT	3 cut(s)	310, 342, 1062
FatI	CATG	8 cut(s)	65, 79, 322, 468, 659, 781, 941, 997
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	223, 777, 1059
FokI	GGATG	2 cut(s)	422, 908
Fsp4HI	GCNGC	3 cut(s)	223, 777, 1059
FspBI	CTAG	1 cut(s)	1014
GluI	GCNGC	3 cut(s)	223, 777, 1059
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	8 cut(s)	69, 83, 326, 472, 663, 785, 945, 1001
HindIII	AAGCTT	3 cut(s)	507, 1007, 1076
HinfI	GANTC	4 cut(s)	95, 259, 485, 959
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	4 cut(s)	152, 344, 803, 836
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	2 cut(s)	251, 927
Hpy188III	TCNNGA	4 cut(s)	10, 40, 398, 1083
Hpy8I	GTNNAC	1 cut(s)	811
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	395, 443, 582, 635
HpyCH4III	ACNGT	6 cut(s)	164, 190, 244, 358, 790, 955
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 776, 840, 884, 1058
HpyF3I	CTNAG	4 cut(s)	551, 697, 924, 1005
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	8 cut(s)	69, 83, 326, 472, 663, 785, 945, 1001
KroI	GCCGGC	1 cut(s)	225
KroNI	GCCGGC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	15, 334, 713, 979
Lsp1109I	GCAGC	3 cut(s)	209, 763, 1070
LweI	GCATC	2 cut(s)	157, 1039
MaeI	CTAG	1 cut(s)	1014
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	184, 790
MalI	GATC	4 cut(s)	17, 336, 715, 981
MboI	GATC	4 cut(s)	15, 334, 713, 979
MboII	GAAGA	6 cut(s)	25, 225, 330, 427, 947, 986
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	713, 979
MhlI	GDGCHC	1 cut(s)	749
MluCI	AATT	6 cut(s)	383, 462, 667, 852, 908, 990
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	3 cut(s)	275, 873, 894
MnlI	CCTC	5 cut(s)	196, 288, 552, 863, 1030
Mph1103I	ATGCAT	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	225
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	4 cut(s)	135, 213, 573, 633
MslI	CAYNNNNRTG	1 cut(s)	165
MspCI	CTTAAG	2 cut(s)	212, 572
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	3 cut(s)	291, 372, 862
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	3 cut(s)	291, 372, 862
MwoI	GCNNNNNNNGC	5 cut(s)	75, 776, 840, 884, 1058
NaeI	GCCGGC	1 cut(s)	227
NdeII	GATC	4 cut(s)	15, 334, 713, 979
NgoMIV	GCCGGC	1 cut(s)	225
NlaIII	CATG	8 cut(s)	69, 83, 326, 472, 663, 785, 945, 1001
NlaIV	GGNNCC	1 cut(s)	1019
NmeAIII	GCCGAG	1 cut(s)	775
NsiI	ATGCAT	1 cut(s)	314
NspI	RCATGY	3 cut(s)	326, 663, 945
PaeI	GCATGC	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	95, 259, 959
PkrI	GCNGC	3 cut(s)	224, 778, 1060
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	368
PshAI	GACNNNNGTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	3 cut(s)	289, 370, 860
PspGI	CCWGG	3 cut(s)	289, 370, 860
PspN4I	GGNNCC	1 cut(s)	1019
PspPI	GGNCC	2 cut(s)	368, 1001
PspPPI	RGGWCCY	1 cut(s)	368
PstNI	CAGNNNCTG	2 cut(s)	242, 931
PsuI	RGATCY	2 cut(s)	713, 979
RsaI	GTAC	5 cut(s)	140, 218, 241, 473, 738
RsaNI	GTAC	5 cut(s)	139, 217, 240, 472, 737
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	4 cut(s)	135, 213, 573, 633
SatI	GCNGC	3 cut(s)	223, 777, 1059
Sau3AI	GATC	4 cut(s)	15, 334, 713, 979
Sau96I	GGNCC	2 cut(s)	368, 1001
ScaI	AGTACT	2 cut(s)	140, 738
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	291, 372, 862
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	2 cut(s)	157, 1039
SinI	GGWCC	2 cut(s)	368, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	3 cut(s)	212, 572, 702
SmoI	CTYRAG	3 cut(s)	212, 572, 702
SphI	GCATGC	1 cut(s)	663
Sse9I	AATT	6 cut(s)	383, 462, 667, 852, 908, 990
SspMI	CTAG	1 cut(s)	1014
StyD4I	CCNGG	3 cut(s)	289, 370, 860
StyI	CCWWGG	2 cut(s)	148, 975
TaaI	ACNGT	6 cut(s)	164, 190, 244, 358, 790, 955
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	9, 39, 343
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	6 cut(s)	383, 462, 667, 852, 908, 990
TatI	WGTACW	3 cut(s)	138, 471, 736
TfiI	GAWTC	3 cut(s)	95, 259, 959
Tru1I	TTAA	4 cut(s)	135, 213, 573, 633
Tru9I	TTAA	4 cut(s)	135, 213, 573, 633
TscAI	CASTG	2 cut(s)	178, 355
TseI	GCWGC	3 cut(s)	222, 776, 1058
TspDTI	ATGAA	4 cut(s)	530, 609, 986, 1033
TspGWI	ACGGA	2 cut(s)	482, 1049
TspRI	CASTG	2 cut(s)	178, 355
Vha464I	CTTAAG	2 cut(s)	212, 572
VpaK11BI	GGWCC	2 cut(s)	368, 1001
XceI	RCATGY	3 cut(s)	326, 663, 945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	1014
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	2 cut(s)	140, 738
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.