RLG00000022898

Isocitrate dehydrogenase NADP

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
14620074 .. 14623928
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022898

Sequence Viewer

Length: 1242 bp
ATGGAGTTCGAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGGATTTAGTTTTCATCTGAATGTCTTTTCCACTTTGTTCTGGCTCATCACCTTGAATCATCTTTTACTCTTTTTAAATACATGTTATTGCCTGCCAAGAGCCCAAGATAGAACTCTTATTTTCCCCTTTTTGGATCTGGACATCAAGTACTTTGACCTTGGTCTTCCTCATCGTGATGCCACTAATGATAAAGTTACCGTTGAAAGTGCAGAGGCAACTCTTAGCATGTTAGAATTTGGGCATTCATATGTTCTTGTTGAACTCCATGTTTACCGCTTTAGTACTGTTTTCAGAGAACCGATTCTTTGCAAGAACGTTCCTCGCCTTATCCCAGGCTGGACAAAGGCAATATGCATTGGAAGACATGCTTTCGGTGATCAATATCGATCAATTGATTTAGTCATAAAAGGACCTGGGAAACTGAAATTGCTTTTTGTTCCAGAAGGAAAGGATGAGAAGACTGAACTGGATGTATACAACTTTACAGGGGAAGGGGGAGTTGCACTTGCCATGTGCAACGTTGATGAGTCAATCCGTGCTTTTGCAGAGGCTTCTATGACCACAGCTTATGAGAAAAAGTGGCCTCTTTATCTTAGCACAAAAAATACTGTTCTTAAGAAGTACGATGGAAGGTATATGCATATTCTCTATTGGCCTTTTATTAATATATATCTAGGATTTTATTTATCATTCTCCAAGTATGAACATCGTCTCATTGATGATATGGTGGCTTATGCACTTAAAAGCGAAGGTGGTTTTGTTTGGGCATGCAAGAATTATGATGGAGATGTACAGAGTGATTTCTTAGCCCAAGGTTTTGGATCTCTTGGATTGATGACTTCAGTACTGGTGTGCCCAGATGGAAAGACTATAGAAGCTGAAGCTGCCCATGGTACAGTTACTCGCCATTATAGAATCCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATTTTTGCTTGGACAAGAGGGCTTGCACACAGGGCAAAGTTGGATGAAAATGCTAAACTGTTGGATTTCACACAGAAGCTGGAAGCAGCTTGTATTGGTACTGTGGAATCTGGGAAAATGACGAAGGATCTTGCGCTAAATATTCATGGACCTAAGGTTGCTAGGAACCACTACTTGAACACGGAAGAGTTCATTGATGCCGTCGCAGCAGAACTGAGAGCAAAGCTTTCTTGA

Protein Analysis

414

Amino Acids

46.7

Weight (kDa)

6.4

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 111 - 404 2.6e-50 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 522
AciI CCGC 1 cut(s) 322
AclI AACGTT 2 cut(s) 363, 567
AclWI GGATC 3 cut(s) 189, 877, 1143
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 2 cut(s) 873, 948
AfaI GTAC 7 cut(s) 197, 331, 671, 840, 894, 943, 1108
AfiI CCNNNNNNNGG 1 cut(s) 178
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 4 cut(s) 103, 251, 308, 1186
AjnI CCWGG 2 cut(s) 379, 460
AluBI AGCT 7 cut(s) 614, 926, 932, 1004, 1087, 1097, 1234
AluI AGCT 7 cut(s) 614, 926, 932, 1004, 1087, 1097, 1234
Alw26I GTCTC 1 cut(s) 764
AlwI GGATC 3 cut(s) 189, 877, 1143
AlwNI CAGNNNCTG 1 cut(s) 1087
AoxI GGCC 2 cut(s) 629, 701
ApeKI GCWGC 3 cut(s) 932, 1094, 1214
ApoI RAATTY 1 cut(s) 281
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 1144
AspS9I GGNCC 2 cut(s) 458, 1157
AsuHPI GGTGA 3 cut(s) 88, 434, 992
AvaII GGWCC 2 cut(s) 458, 1157
AxyI CCTNAGG 1 cut(s) 1161
BaeGI GKGCMC 1 cut(s) 905
BanII GRGCYC 1 cut(s) 151
BbsI GAAGAC 3 cut(s) 203, 415, 512
BbvI GCAGC 3 cut(s) 919, 1106, 1226
BccI CCATC 5 cut(s) 37, 41, 668, 824, 902
BceAI ACGGC 1 cut(s) 1193
BciT130I CCWGG 2 cut(s) 381, 462
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 764
BfaI CTAG 2 cut(s) 722, 1170
BfmI CTRYAG 1 cut(s) 918
BfrI CTTAAG 1 cut(s) 662
BisI GCNGC 3 cut(s) 933, 1095, 1215
BlsI GCNGC 3 cut(s) 934, 1096, 1216
BmcAI AGTACT 3 cut(s) 197, 331, 894
Bme1390I CCNGG 2 cut(s) 381, 462
Bme18I GGWCC 2 cut(s) 458, 1157
BmgT120I GGNCC 2 cut(s) 458, 1157
BmiI GGNNCC 1 cut(s) 1175
BmrFI CCNGG 2 cut(s) 381, 462
BmsI GCATC 2 cut(s) 214, 1195
BoxI GACNNNNGTC 1 cut(s) 207
BpiI GAAGAC 3 cut(s) 203, 415, 512
Bsa29I ATCGAT 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 5 cut(s) 205, 379, 461, 859, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 519, 900
Bse21I CCTNAGG 1 cut(s) 1161
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 2 cut(s) 381, 462
BseCI ATCGAT 1 cut(s) 433
BseDI CCNNGG 5 cut(s) 205, 379, 461, 859, 937
BseGI GGATG 3 cut(s) 505, 523, 1057
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 1214
BseNI ACTGG 2 cut(s) 519, 900
BseSI GKGCMC 1 cut(s) 905
BseXI GCAGC 3 cut(s) 919, 1106, 1226
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 2 cut(s) 631, 703
BshVI ATCGAT 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 764
BsmBI CGTCTC 1 cut(s) 764
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 2 cut(s) 631, 703
Bsp1286I GDGCHC 2 cut(s) 151, 905
Bsp1407I TGTACA 1 cut(s) 838
Bsp143I GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
Bsp19I CCATGG 1 cut(s) 937
BspACI CCGC 1 cut(s) 322
BspANI GGCC 2 cut(s) 631, 703
BspCNI CTCAG 1 cut(s) 1215
BspDI ATCGAT 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 1175
BspPI GGATC 3 cut(s) 189, 877, 1143
BspTI CTTAAG 1 cut(s) 662
BsrGI TGTACA 1 cut(s) 838
BsrI ACTGG 2 cut(s) 519, 900
BssECI CCNNGG 5 cut(s) 205, 379, 461, 859, 937
BssMI GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
BssNAI GTATAC 1 cut(s) 523
BssT1I CCWWGG 3 cut(s) 205, 859, 937
Bst1107I GTATAC 1 cut(s) 523
Bst2UI CCWGG 2 cut(s) 381, 462
Bst4CI ACNGT 6 cut(s) 247, 334, 658, 946, 1068, 1111
Bst6I CTCTTC 1 cut(s) 1188
BstAFI CTTAAG 1 cut(s) 662
BstAUI TGTACA 1 cut(s) 838
BstC8I GCNNGC 3 cut(s) 140, 817, 1032
BstDEI CTNAG 5 cut(s) 269, 641, 853, 1161, 1223
BstDSI CCRYGG 1 cut(s) 937
BstF5I GGATG 3 cut(s) 505, 523, 1057
BstHHI GCGC 1 cut(s) 1144
BstKTI GATC 6 cut(s) 18, 184, 427, 437, 872, 1138
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 932, 996, 1040, 1214
BstNI CCWGG 2 cut(s) 381, 462
BstNSI RCATGY 4 cut(s) 132, 277, 416, 819
BstPAI GACNNNNGTC 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 379, 460
BstSFI CTRYAG 1 cut(s) 918
BstSLI GKGCMC 1 cut(s) 905
BstV1I GCAGC 3 cut(s) 919, 1106, 1226
BstV2I GAAGAC 3 cut(s) 203, 415, 512
BstX2I RGATCY 3 cut(s) 181, 869, 1135
BstXI CCANNNNNNTGG 1 cut(s) 866
BstYI RGATCY 3 cut(s) 181, 869, 1135
BstZ17I GTATAC 1 cut(s) 523
Bsu15I ATCGAT 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 1161
BsuRI GGCC 2 cut(s) 631, 703
BsuTUI ATCGAT 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 937
BtsCI GGATG 3 cut(s) 505, 523, 1057
Cac8I GCNNGC 3 cut(s) 140, 817, 1032
CaiI CAGNNNCTG 1 cut(s) 1087
CfoI GCGC 1 cut(s) 1144
Cfr13I GGNCC 2 cut(s) 458, 1157
ClaI ATCGAT 1 cut(s) 433
Csp6I GTAC 7 cut(s) 196, 330, 670, 839, 893, 942, 1107
CviAII CATG 8 cut(s) 129, 274, 314, 413, 559, 816, 938, 1154
CviQI GTAC 7 cut(s) 196, 330, 670, 839, 893, 942, 1107
DdeI CTNAG 5 cut(s) 269, 641, 853, 1161, 1223
DpnI GATC 6 cut(s) 17, 183, 426, 436, 871, 1137
DpnII GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
DraI TTTAAA 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 1188
EarI CTCTTC 1 cut(s) 1188
Eco130I CCWWGG 3 cut(s) 205, 859, 937
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 458, 1157
Eco57I CTGAAG 2 cut(s) 873, 948
Eco81I CCTNAGG 1 cut(s) 1161
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 379, 460
EcoT14I CCWWGG 3 cut(s) 205, 859, 937
EcoT22I ATGCAT 2 cut(s) 404, 690
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 3 cut(s) 205, 859, 937
Esp3I CGTCTC 1 cut(s) 764
FaeI CATG 8 cut(s) 132, 277, 317, 416, 562, 819, 941, 1157
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 8 cut(s) 128, 273, 313, 412, 558, 815, 937, 1153
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 933, 1095, 1215
FokI GGATG 3 cut(s) 512, 530, 1064
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 933, 1095, 1215
FspBI CTAG 2 cut(s) 722, 1170
GlaI GCGC 1 cut(s) 1143
GluI GCNGC 3 cut(s) 933, 1095, 1215
HaeIII GGCC 2 cut(s) 631, 703
HhaI GCGC 1 cut(s) 1144
Hin1II CATG 8 cut(s) 132, 277, 317, 416, 562, 819, 941, 1157
Hin6I GCGC 1 cut(s) 1142
HinP1I GCGC 1 cut(s) 1142
HindIII AAGCTT 1 cut(s) 1232
HinfI GANTC 5 cut(s) 103, 349, 575, 963, 1115
HphI GGTGA 3 cut(s) 88, 434, 992
Hpy166II GTNNAC 2 cut(s) 319, 523
Hpy188I TCNGA 2 cut(s) 66, 341
Hpy188III TCNNGA 5 cut(s) 10, 185, 221, 488, 1239
Hpy8I GTNNAC 2 cut(s) 319, 523
Hpy99I CGWCG 1 cut(s) 1214
HpyAV CCTTC 5 cut(s) 485, 533, 672, 791, 1126
HpyCH4III ACNGT 6 cut(s) 247, 334, 658, 946, 1068, 1111
HpyCH4IV ACGT 2 cut(s) 363, 567
HpyF10VI GCNNNNNNNGC 4 cut(s) 932, 996, 1040, 1214
HpyF3I CTNAG 5 cut(s) 269, 641, 853, 1161, 1223
HpySE526I ACGT 2 cut(s) 363, 567
Hsp92II CATG 8 cut(s) 132, 277, 317, 416, 562, 819, 941, 1157
HspAI GCGC 1 cut(s) 1142
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
Lsp1109I GCAGC 3 cut(s) 919, 1106, 1226
LweI GCATC 2 cut(s) 214, 1195
MaeI CTAG 2 cut(s) 722, 1170
MaeII ACGT 2 cut(s) 363, 567
MaeIII GTNAC 2 cut(s) 241, 946
MalI GATC 6 cut(s) 17, 183, 426, 436, 871, 1137
MboI GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
MboII GAAGA 5 cut(s) 25, 203, 420, 517, 1205
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 3 cut(s) 181, 869, 1135
MhlI GDGCHC 2 cut(s) 151, 905
MluCI AATT 4 cut(s) 281, 438, 473, 823
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 2 cut(s) 1029, 1050
MnlI CCTC 7 cut(s) 225, 253, 378, 589, 642, 971, 1019
Mph1103I ATGCAT 2 cut(s) 404, 690
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 4 cut(s) 122, 663, 711, 789
MslI CAYNNNNRTG 3 cut(s) 66, 222, 294
MspCI CTTAAG 1 cut(s) 662
MspR9I CCNGG 2 cut(s) 381, 462
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 2 cut(s) 381, 462
MwoI GCNNNNNNNGC 4 cut(s) 932, 996, 1040, 1214
NcoI CCATGG 1 cut(s) 937
NdeI CATATG 1 cut(s) 295
NdeII GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
NlaIII CATG 8 cut(s) 132, 277, 317, 416, 562, 819, 941, 1157
NlaIV GGNNCC 1 cut(s) 1175
NsiI ATGCAT 2 cut(s) 404, 690
NspI RCATGY 4 cut(s) 132, 277, 416, 819
PaeI GCATGC 1 cut(s) 819
PciI ACATGT 1 cut(s) 128
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 103, 349, 963, 1115
PkrI GCNGC 3 cut(s) 934, 1096, 1216
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 458
PscI ACATGT 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 711
Psp1406I AACGTT 2 cut(s) 363, 567
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 379, 460
PspGI CCWGG 2 cut(s) 379, 460
PspN4I GGNNCC 1 cut(s) 1175
PspPI GGNCC 2 cut(s) 458, 1157
PspPPI RGGWCCY 1 cut(s) 458
PstNI CAGNNNCTG 1 cut(s) 1087
PsuI RGATCY 3 cut(s) 181, 869, 1135
RsaI GTAC 7 cut(s) 197, 331, 671, 840, 894, 943, 1108
RsaNI GTAC 7 cut(s) 196, 330, 670, 839, 893, 942, 1107
RseI CAYNNNNRTG 3 cut(s) 66, 222, 294
SaqAI TTAA 4 cut(s) 122, 663, 711, 789
SatI GCNGC 3 cut(s) 933, 1095, 1215
Sau3AI GATC 6 cut(s) 15, 181, 424, 434, 869, 1135
Sau96I GGNCC 2 cut(s) 458, 1157
ScaI AGTACT 3 cut(s) 197, 331, 894
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 2 cut(s) 381, 462
SduI GDGCHC 2 cut(s) 151, 905
SfaNI GCATC 2 cut(s) 214, 1195
SfcI CTRYAG 1 cut(s) 918
SinI GGWCC 2 cut(s) 458, 1157
SmiMI CAYNNNNRTG 3 cut(s) 66, 222, 294
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
SphI GCATGC 1 cut(s) 819
Sse9I AATT 4 cut(s) 281, 438, 473, 823
SsiI CCGC 1 cut(s) 322
SspI AATATT 1 cut(s) 1150
SspMI CTAG 2 cut(s) 722, 1170
StyD4I CCNGG 2 cut(s) 379, 460
StyI CCWWGG 3 cut(s) 205, 859, 937
TaaI ACNGT 6 cut(s) 247, 334, 658, 946, 1068, 1111
TaiI ACGT 2 cut(s) 366, 570
TaqI TCGA 2 cut(s) 9, 433
TasI AATT 4 cut(s) 281, 438, 473, 823
TatI WGTACW 4 cut(s) 195, 329, 838, 892
TfiI GAWTC 4 cut(s) 103, 349, 963, 1115
Tru1I TTAA 4 cut(s) 122, 663, 711, 789
Tru9I TTAA 4 cut(s) 122, 663, 711, 789
TseI GCWGC 3 cut(s) 932, 1094, 1214
TspDTI ATGAA 6 cut(s) 50, 282, 765, 1068, 1142, 1189
TspGWI ACGGA 3 cut(s) 63, 572, 1205
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 458, 1157
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 281
XceI RCATGY 4 cut(s) 132, 277, 416, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 722, 1170
ZrmI AGTACT 3 cut(s) 197, 331, 894
Zsp2I ATGCAT 2 cut(s) 404, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.