Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Forward (+)

22619490 .. 22623283

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0242800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGGATAAGCCCAATTTTCCGGAGAAACAAACCACCGCAACCACAACAACATGGACGACGTGGGAGGAGCTCCTCCTCGCCTGCGCCGTCCACCGCTACGGCACTCAGAGCTGGGACTCCGTCGCCGCCCAGCTCCGCAAGCGCAGTTCCAACCTCCACCACCTCACTCCTCAGATATGCAAACACAAGTTCCACGACCTCCGACGCCGCTTCAACCACCACAACGACGCCGTTTGCGACGGCGACGACGCAGCATCCTCTCCTATTCCATGGCTCGATCAGTTGCGACAACAACGCCTCGATGAACTCCGGCGCGAGGTTCAACGCTCCGACGTCTCCATCGTGTCTCTGCAATCGAAGGTGGAGAGATTGAAAGAAGTGCGCGAAAAATCGGATCTGGATAAGAGCGGAGAGGAACAAGAGATCAAACACAAATCCGTCGAGCCGGAAAACACCTCGCCGGAAAATGTCGCCGAGAAAGAGGTTTCCGAGCGTAATGATGGCCGGTCTTTCGACGAGTCCAACACCACAGATCCGAAGCCTGAGGTTCCCGAAACCGGAGTCGACGCGGCTGAGAAAGACGCGGAACCGGTCGAACCGGCCGCCGGGGAGATCGGAGCGGTCGAGAAGTCGAGTAACCCGGTGGTGGTGGAGGACTCGTGTAATGGGAGTTCCGATTCGGTGGTGAAGGAAGCGCCGGTTGCTGAGTCGGAGAAGGCGAACTCGGGCGAGTTGAGGGAATCGGTGGCGGAGTCGAAGGGGACGAAGGAGAGTCGGAGTAGCAGTGAGGTTCAGAGCTCGGCGAGTTTGTCGAGAAAATTAGGGCCGGAACTGAAGCCGAGGGAACCGGTCGAACCGGACCAGGAGGACCAATCTCCCGCCATGAATCAGATCCCCGTGGAATCTCAGCCGTTGGTTGATTTCCTCGGGATTCTCCGATCTCACAAGGCCGCTACGTTTTTCGAGCGCCGGCTCCAGTCCCAGGACACATCCATTTATACCAACATGATTCGGCAACATACAGATTTTGAATTGGTGCAAACCAGACTTAATGGAGGTTGGTACTCAAGCTGCAAGATCAAATTTTTTAGAGATATCTTGCTTATTTGTAAGAATGCCATAGTCTTCTTCGGGAAAAGGGCTCCAGAATACACGGCTGCCTGTGAGCTTCAATTACTTGTTTTAAAGGAGATGGCTCGTAAGGATCGTAATCAAGATCCATCACCTAAACAAGAAACTCATATGCCATCTAAAGAAGAAACGCTGACACCACCAGCTCTACCATTGAAGCCTGAAACTGAATCATCGGAGTCGTTGCTAGCAAAATCAAAACTATCAATTCCATTGACTGCTTGTCGCAAGCGCAGCTCAATAAAGGCCAGAGCATCCACCTCTTCTTCAGCACCAGACATAAAAAAAGAGCAAAAGACTACATTATTGTGTGATGTCAAACCAGCTATAAGTTGGAAGCAAAAAGAAGATTCCTCGGATGAAGTTGAGGAGCAACTTCCTGTCACAAAGAAGAGAAGAAAAGAAAGAGTTGGGAGCAATTCAAGAAACAACTCGAACAAAAATAGCAGGAGCCGAAGTGATACTAAGAAGGAGAAGAATCCAGATGCCAATGCCAATGCAAATGTTGGTTCTTCAACCAGAGCAATGATTAGTAATGAGAATTCAGAGTCCATAGCCGAGATGGATAAGAAGAGCAGTAGTAATACAAGTGGGAAAAGGCAAAGTGCAGAAAAATTCTTGAGTAGAATGAAGAGGAGTTCTGGATCCAACAACAAATCAGAGACATTGAAAATTCCTGAGAATGATAGCAAAGGTGCAGCAGAGCAGAGAAAGAACGGAAACATCAAAGGGAATGCACAGAAAACAGCAGAGCAGAGAAAAAATGGAAATGGCAAAGGGAGTGCACAGAAAGAAGTAGCAGAGCAGAAGAAAGGTGGAAATGGAAAAGGAAATGCGCAGAAAGAACAAGCTTCACGTAGAGGTTCTGGTGGGAGACAGGCTGCGAAAGAGCAAGGAAGCCCCACGAAAAGGAGCGTGGGACGGCCCTCAAAGAGGGCAGCGGAAACAACGAGAGCTGCTCCAGCTAAACGGCGTAGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

704

Amino Acids

78.13

Weight (kDa)

9.24

Isoelectric Point (pI)

66.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 51	3.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
Acc16I	TGCGCA	1 cut(s)	1968
AccBSI	CCGCTC	2 cut(s)	408, 620
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	4 cut(s)	315, 384, 569, 584
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	7 cut(s)	402, 527, 886, 1211, 1212, 1770, 1783
AcoI	YGGCCR	2 cut(s)	502, 600
AcsI	RAATTY	4 cut(s)	1082, 1672, 1745, 1803
AcuI	CTGAAG	2 cut(s)	854, 1383
AcyI	GRCGYC	3 cut(s)	205, 228, 333
AfaI	GTAC	1 cut(s)	1064
AfiI	CCNNNNNNNGG	7 cut(s)	316, 557, 605, 646, 982, 2040, 2064
AgeI	ACCGGT	2 cut(s)	589, 847
AgsI	TTSAA	9 cut(s)	214, 323, 373, 1031, 1172, 1288, 1554, 1647, 1801
AhdI	GACNNNNNGTC	1 cut(s)	1353
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	861, 981
Alw21I	GWGCWC	3 cut(s)	72, 800, 1918
Alw26I	GTCTC	4 cut(s)	340, 351, 1787, 1999
Alw44I	GTGCAC	1 cut(s)	1914
AlwI	GGATC	7 cut(s)	402, 527, 886, 1211, 1212, 1770, 1783
Ama87I	CYCGRG	2 cut(s)	724, 926
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	6 cut(s)	502, 600, 824, 948, 1377, 2054
ApaLI	GTGCAC	1 cut(s)	1914
ApeKI	GCWGC	8 cut(s)	251, 1071, 1157, 1365, 1829, 2012, 2069, 2087
ApoI	RAATTY	4 cut(s)	1082, 1672, 1745, 1803
ArsI	GACNNNNNNTTYG	2 cut(s)	546, 578
AsiGI	ACCGGT	2 cut(s)	589, 847
AspLEI	GCGC	8 cut(s)	86, 144, 315, 384, 697, 969, 1365, 1969
AspS9I	GGNCC	4 cut(s)	824, 859, 868, 2055
AsuC2I	CCSGG	2 cut(s)	607, 641
AsuHPI	GGTGA	2 cut(s)	697, 1215
AsuNHI	GCTAGC	1 cut(s)	1318
AvaI	CYCGRG	2 cut(s)	724, 926
AvaII	GGWCC	2 cut(s)	859, 868
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	1918
BamHI	GGATCC	1 cut(s)	1775
BanII	GRGCYC	3 cut(s)	72, 800, 1144
BauI	CACGAG	1 cut(s)	658
BbsI	GAAGAC	1 cut(s)	1117
Bbv12I	GWGCWC	3 cut(s)	72, 800, 1918
BbvI	GCAGC	8 cut(s)	263, 1058, 1144, 1377, 1841, 1999, 2074, 2081
BccI	CCATC	6 cut(s)	347, 494, 1186, 1228, 1255, 1687
BceAI	ACGGC	7 cut(s)	71, 115, 215, 256, 895, 1170, 2069
BciT130I	CCWGG	2 cut(s)	863, 983
BcnI	CCSGG	2 cut(s)	607, 641
BcoDI	GTCTC	4 cut(s)	340, 351, 1787, 1999
BfaI	CTAG	2 cut(s)	1319, 2113
BfoI	RGCGCY	2 cut(s)	698, 970
Bme1390I	CCNGG	4 cut(s)	607, 641, 863, 983
Bme18I	GGWCC	2 cut(s)	859, 868
BmeRI	GACNNNNNGTC	1 cut(s)	1353
BmeT110I	CYCGRG	2 cut(s)	724, 926
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	4 cut(s)	824, 859, 868, 2055
BmiI	GGNNCC	7 cut(s)	549, 588, 846, 974, 1143, 1583, 1777
BmrFI	CCNGG	4 cut(s)	607, 641, 863, 983
BmsI	GCATC	3 cut(s)	263, 1394, 1606
BmtI	GCTAGC	1 cut(s)	1322
BpiI	GAAGAC	1 cut(s)	1117
BplI	GAGNNNNNCTC	2 cut(s)	2074, 2106
BpmI	CTGGAG	3 cut(s)	959, 1128, 2076
BpuEI	CTTGAG	2 cut(s)	1051, 1771
BpuMI	CCSGG	2 cut(s)	607, 641
BsaAI	YACGTR	1 cut(s)	1988
BsaBI	GATNNNNATC	1 cut(s)	1209
BsaHI	GRCGYC	3 cut(s)	205, 228, 333
BsaJI	CCNNGG	7 cut(s)	269, 606, 839, 897, 925, 981, 1485
BsaWI	WCCGGW	5 cut(s)	19, 557, 589, 847, 856
BsaXI	ACNNNNNCTCC	6 cut(s)	644, 674, 769, 799, 1573, 1603
Bsc4I	CCNNNNNNNGG	7 cut(s)	316, 557, 605, 646, 982, 2040, 2064
Bse118I	RCCGGY	6 cut(s)	504, 589, 598, 697, 847, 969
Bse1I	ACTGG	1 cut(s)	976
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	1662
Bse8I	GATNNNNATC	1 cut(s)	1209
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	863, 983
BseDI	CCNNGG	7 cut(s)	269, 606, 839, 897, 925, 981, 1485
BseGI	GGATG	4 cut(s)	254, 989, 1385, 1495
BseJI	GATNNNNATC	1 cut(s)	1209
BseLI	CCNNNNNNNGG	7 cut(s)	316, 557, 605, 646, 982, 2040, 2064
BseMI	GCAATG	1 cut(s)	1662
BseMII	CTCAG	7 cut(s)	119, 185, 534, 564, 696, 920, 1800
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	6 cut(s)	62, 65, 80, 159, 1514, 1780
BseSI	GKGCMC	1 cut(s)	1918
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	8 cut(s)	263, 1058, 1144, 1377, 1841, 1999, 2074, 2081
BseYI	CCCAGC	2 cut(s)	111, 129
BsgI	GTGCAG	2 cut(s)	1758, 1848
Bsh1236I	CGCG	4 cut(s)	315, 384, 569, 584
Bsh1285I	CGRYCG	4 cut(s)	594, 603, 624, 852
BshFI	GGCC	6 cut(s)	504, 602, 826, 950, 1379, 2056
BshTI	ACCGGT	2 cut(s)	589, 847
BsiEI	CGRYCG	4 cut(s)	594, 603, 624, 852
BsiHKAI	GWGCWC	3 cut(s)	72, 800, 1918
BsiHKCI	CYCGRG	2 cut(s)	724, 926
BslFI	GGGAC	4 cut(s)	128, 775, 964, 2064
BslI	CCNNNNNNNGG	7 cut(s)	316, 557, 605, 646, 982, 2040, 2064
BsmAI	GTCTC	4 cut(s)	340, 351, 1787, 1999
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	4 cut(s)	128, 775, 964, 2064
BsmI	GAATGC	2 cut(s)	1120, 1870
BsnI	GGCC	6 cut(s)	504, 602, 826, 950, 1379, 2056
BsoBI	CYCGRG	2 cut(s)	724, 926
Bsp1286I	GDGCHC	4 cut(s)	72, 800, 1144, 1918
Bsp13I	TCCGGA	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	269
BspANI	GGCC	6 cut(s)	504, 602, 826, 950, 1379, 2056
BspCNI	CTCAG	7 cut(s)	118, 184, 535, 565, 697, 919, 1801
BspEI	TCCGGA	1 cut(s)	19
BspFNI	CGCG	4 cut(s)	315, 384, 569, 584
BspLI	GGNNCC	7 cut(s)	549, 588, 846, 974, 1143, 1583, 1777
BspOI	GCTAGC	1 cut(s)	1322
BspPI	GGATC	7 cut(s)	402, 527, 886, 1211, 1212, 1770, 1783
BspQI	GCTCTTC	1 cut(s)	1697
BsrBI	CCGCTC	2 cut(s)	408, 620
BsrDI	GCAATG	1 cut(s)	1662
BsrFI	RCCGGY	6 cut(s)	504, 589, 598, 697, 847, 969
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	6 cut(s)	504, 589, 598, 697, 847, 969
BssECI	CCNNGG	7 cut(s)	269, 606, 839, 897, 925, 981, 1485
BssNI	GRCGYC	3 cut(s)	205, 228, 333
BssSI	CACGAG	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	863, 983
Bst6I	CTCTTC	4 cut(s)	1399, 1517, 1697, 1757
BstACI	GRCGYC	3 cut(s)	205, 228, 333
BstBAI	YACGTR	1 cut(s)	1988
BstC8I	GCNNGC	5 cut(s)	82, 140, 971, 1320, 1361
BstDEI	CTNAG	8 cut(s)	105, 171, 543, 573, 705, 906, 1596, 1809
BstDSI	CCRYGG	2 cut(s)	269, 897
BstENI	CCTNNNNNAGG	1 cut(s)	2062
BstF5I	GGATG	4 cut(s)	254, 989, 1385, 1495
BstFNI	CGCG	4 cut(s)	315, 384, 569, 584
BstH2I	RGCGCY	2 cut(s)	698, 970
BstHHI	GCGC	8 cut(s)	86, 144, 315, 384, 697, 969, 1365, 1969
BstMAI	GTCTC	4 cut(s)	340, 351, 1787, 1999
BstMCI	CGRYCG	4 cut(s)	594, 603, 624, 852
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 139, 701, 1365, 2093
BstNI	CCWGG	2 cut(s)	863, 983
BstSCI	CCNGG	4 cut(s)	605, 639, 861, 981
BstSLI	GKGCMC	1 cut(s)	1918
BstUI	CGCG	4 cut(s)	315, 384, 569, 584
BstV1I	GCAGC	8 cut(s)	263, 1058, 1144, 1377, 1841, 1999, 2074, 2081
BstV2I	GAAGAC	1 cut(s)	1117
BstX2I	RGATCY	5 cut(s)	394, 532, 891, 1216, 1775
BstYI	RGATCY	5 cut(s)	394, 532, 891, 1216, 1775
BstZI	CGGCCG	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	6 cut(s)	504, 602, 826, 950, 1379, 2056
BtgI	CCRYGG	2 cut(s)	269, 897
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	254, 989, 1385, 1495
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	5 cut(s)	82, 140, 971, 1320, 1361
CfoI	GCGC	8 cut(s)	86, 144, 315, 384, 697, 969, 1365, 1969
Cfr10I	RCCGGY	6 cut(s)	504, 589, 598, 697, 847, 969
Cfr13I	GGNCC	4 cut(s)	824, 859, 868, 2055
CseI	GACGC	5 cut(s)	213, 236, 257, 575, 590
Csp6I	GTAC	1 cut(s)	1063
CspAI	ACCGGT	2 cut(s)	589, 847
CviAII	CATG	4 cut(s)	51, 270, 883, 1006
CviQI	GTAC	1 cut(s)	1063
DdeI	CTNAG	8 cut(s)	105, 171, 543, 573, 705, 906, 1596, 1809
DraI	TTTAAA	1 cut(s)	1185
DriI	GACNNNNNGTC	1 cut(s)	1353
EaeI	YGGCCR	2 cut(s)	502, 600
EagI	CGGCCG	1 cut(s)	600
Eam1104I	CTCTTC	4 cut(s)	1399, 1517, 1697, 1757
Eam1105I	GACNNNNNGTC	1 cut(s)	1353
EarI	CTCTTC	4 cut(s)	1399, 1517, 1697, 1757
EciI	GGCGGA	1 cut(s)	764
Ecl136II	GAGCTC	2 cut(s)	70, 798
EclXI	CGGCCG	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	3 cut(s)	72, 800, 1144
Eco32I	GATATC	1 cut(s)	1096
Eco47I	GGWCC	2 cut(s)	859, 868
Eco52I	CGGCCG	1 cut(s)	600
Eco53kI	GAGCTC	2 cut(s)	70, 798
Eco57I	CTGAAG	2 cut(s)	854, 1383
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	2 cut(s)	724, 926
EcoICRI	GAGCTC	2 cut(s)	70, 798
EcoNI	CCTNNNNNAGG	1 cut(s)	2062
EcoRI	GAATTC	1 cut(s)	1672
EcoRII	CCWGG	2 cut(s)	861, 981
EcoRV	GATATC	1 cut(s)	1096
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	3 cut(s)	72, 800, 1144
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	4 cut(s)	54, 273, 886, 1009
FaqI	GGGAC	4 cut(s)	128, 775, 964, 2064
FatI	CATG	4 cut(s)	50, 269, 882, 1005
FauI	CCCGC	1 cut(s)	886
FauNDI	CATATG	1 cut(s)	1242
FblI	GTMKAC	1 cut(s)	564
FokI	GGATG	4 cut(s)	241, 976, 1372, 1502
FriOI	GRGCYC	3 cut(s)	72, 800, 1144
FspBI	CTAG	2 cut(s)	1319, 2113
FspI	TGCGCA	1 cut(s)	1968
GlaI	GCGC	8 cut(s)	85, 143, 314, 383, 696, 968, 1364, 1968
GsaI	CCCAGC	2 cut(s)	115, 133
GsuI	CTGGAG	3 cut(s)	959, 1128, 2076
HaeII	RGCGCY	2 cut(s)	698, 970
HaeIII	GGCC	6 cut(s)	504, 602, 826, 950, 1379, 2056
HgaI	GACGC	5 cut(s)	213, 236, 257, 575, 590
HhaI	GCGC	8 cut(s)	86, 144, 315, 384, 697, 969, 1365, 1969
Hin1I	GRCGYC	3 cut(s)	205, 228, 333
Hin1II	CATG	4 cut(s)	54, 273, 886, 1009
Hin6I	GCGC	8 cut(s)	84, 142, 313, 382, 695, 967, 1363, 1967
HinP1I	GCGC	8 cut(s)	84, 142, 313, 382, 695, 967, 1363, 1967
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	1980
HphI	GGTGA	2 cut(s)	697, 1215
Hpy166II	GTNNAC	3 cut(s)	91, 565, 1916
Hpy8I	GTNNAC	3 cut(s)	91, 565, 1916
HpyAV	CCTTC	6 cut(s)	352, 682, 709, 751, 760, 1594
HpyCH4IV	ACGT	4 cut(s)	59, 333, 956, 1987
HpyCH4V	TGCA	9 cut(s)	180, 352, 1039, 1074, 1631, 1739, 1829, 1868, 1916
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 139, 701, 1365, 2093
HpyF3I	CTNAG	8 cut(s)	105, 171, 543, 573, 705, 906, 1596, 1809
HpySE526I	ACGT	4 cut(s)	59, 333, 956, 1987
Hsp92I	GRCGYC	3 cut(s)	205, 228, 333
Hsp92II	CATG	4 cut(s)	54, 273, 886, 1009
HspAI	GCGC	8 cut(s)	84, 142, 313, 382, 695, 967, 1363, 1967
Kpn2I	TCCGGA	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	969
KroNI	GCCGGC	1 cut(s)	971
LguI	GCTCTTC	1 cut(s)	1697
Lsp1109I	GCAGC	8 cut(s)	263, 1058, 1144, 1377, 1841, 1999, 2074, 2081
LweI	GCATC	3 cut(s)	263, 1394, 1606
MaeI	CTAG	2 cut(s)	1319, 2113
MaeII	ACGT	4 cut(s)	59, 333, 956, 1987
MaeIII	GTNAC	2 cut(s)	635, 1513
MbiI	CCGCTC	2 cut(s)	408, 620
MflI	RGATCY	5 cut(s)	394, 532, 891, 1216, 1775
MhlI	GDGCHC	4 cut(s)	72, 800, 1144, 1918
MlyI	GAGTC	9 cut(s)	110, 527, 570, 650, 716, 761, 781, 1319, 1688
MmeI	TCCRAC	8 cut(s)	174, 226, 354, 546, 690, 755, 1445, 1803
MroI	TCCGGA	1 cut(s)	19
MroNI	GCCGGC	1 cut(s)	969
MseI	TTAA	2 cut(s)	1050, 1184
MslI	CAYNNNNRTG	1 cut(s)	1438
MspA1I	CMGCKG	1 cut(s)	2072
MspR9I	CCNGG	4 cut(s)	607, 641, 863, 983
Mva1269I	GAATGC	2 cut(s)	1120, 1870
MvaI	CCWGG	2 cut(s)	863, 983
MvnI	CGCG	4 cut(s)	315, 384, 569, 584
MwoI	GCNNNNNNNGC	5 cut(s)	108, 139, 701, 1365, 2093
NaeI	GCCGGC	1 cut(s)	971
NciI	CCSGG	2 cut(s)	607, 641
NcoI	CCATGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	1242
NgoMIV	GCCGGC	1 cut(s)	969
NheI	GCTAGC	1 cut(s)	1318
NlaIII	CATG	4 cut(s)	54, 273, 886, 1009
NlaIV	GGNNCC	7 cut(s)	549, 588, 846, 974, 1143, 1583, 1777
NmeAIII	GCCGAG	4 cut(s)	499, 779, 864, 1714
NmuCI	GTSAC	1 cut(s)	1513
NsbI	TGCGCA	1 cut(s)	1968
PciSI	GCTCTTC	1 cut(s)	1697
PcsI	WCGNNNNNNNCGW	7 cut(s)	84, 234, 339, 621, 716, 761, 1204
PctI	GAATGC	2 cut(s)	1120, 1870
PdiI	GCCGGC	1 cut(s)	971
PfeI	GAWTC	9 cut(s)	677, 740, 886, 902, 931, 1009, 1301, 1481, 1609
PflFI	GACNNNGTC	1 cut(s)	119
PinAI	ACCGGT	2 cut(s)	589, 847
PleI	GAGTC	9 cut(s)	110, 526, 569, 650, 715, 760, 780, 1318, 1687
PpsI	GAGTC	9 cut(s)	110, 526, 569, 650, 715, 760, 780, 1318, 1687
Ppu21I	YACGTR	1 cut(s)	1988
Psp124BI	GAGCTC	2 cut(s)	72, 800
Psp6I	CCWGG	2 cut(s)	861, 981
PspFI	CCCAGC	2 cut(s)	111, 129
PspGI	CCWGG	2 cut(s)	861, 981
PspN4I	GGNNCC	7 cut(s)	549, 588, 846, 974, 1143, 1583, 1777
PspPI	GGNCC	4 cut(s)	824, 859, 868, 2055
PsrI	GAACNNNNNNTAC	2 cut(s)	655, 687
PsuI	RGATCY	5 cut(s)	394, 532, 891, 1216, 1775
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	1064
RsaNI	GTAC	1 cut(s)	1063
RseI	CAYNNNNRTG	1 cut(s)	1438
SacI	GAGCTC	2 cut(s)	72, 800
SalI	GTCGAC	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	1697
SaqAI	TTAA	2 cut(s)	1050, 1184
Sau96I	GGNCC	4 cut(s)	824, 859, 868, 2055
SchI	GAGTC	9 cut(s)	110, 527, 570, 650, 716, 761, 781, 1319, 1688
ScrFI	CCNGG	4 cut(s)	607, 641, 863, 983
SduI	GDGCHC	4 cut(s)	72, 800, 1144, 1918
SfaNI	GCATC	3 cut(s)	263, 1394, 1606
SinI	GGWCC	2 cut(s)	859, 868
SmiMI	CAYNNNNRTG	1 cut(s)	1438
SmlI	CTYRAG	2 cut(s)	1066, 1750
SmoI	CTYRAG	2 cut(s)	1066, 1750
SspMI	CTAG	2 cut(s)	1319, 2113
SstI	GAGCTC	2 cut(s)	72, 800
StyD4I	CCNGG	4 cut(s)	605, 639, 861, 981
StyI	CCWWGG	1 cut(s)	269
TaiI	ACGT	4 cut(s)	62, 336, 959, 1990
TauI	GCSGC	5 cut(s)	128, 210, 572, 605, 953
TfiI	GAWTC	9 cut(s)	677, 740, 886, 902, 931, 1009, 1301, 1481, 1609
Tru1I	TTAA	2 cut(s)	1050, 1184
Tru9I	TTAA	2 cut(s)	1050, 1184
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	1513
TseI	GCWGC	8 cut(s)	251, 1071, 1157, 1365, 1829, 2012, 2069, 2087
Tsp45I	GTSAC	1 cut(s)	1513
TspDTI	ATGAA	4 cut(s)	318, 899, 1506, 1775
TspGWI	ACGGA	3 cut(s)	109, 427, 1863
TspRI	CASTG	1 cut(s)	790
Tth111I	GACNNNGTC	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	1914
VpaK11BI	GGWCC	2 cut(s)	859, 868
XagI	CCTNNNNNAGG	1 cut(s)	2062
XapI	RAATTY	4 cut(s)	1082, 1672, 1745, 1803
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1461, 1690
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	2 cut(s)	1319, 2113
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.