Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Forward (+)

36742669 .. 36744171

Gene Structure 1503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTTGCAGTTCCAGAAGGAAAGGATGAGAAGACTGAACTAGATGTATACAACTTTACAGGGGAAGGGGGAGTTGCACTTGCCATGTGCAACGTTGATGAGTCAATCCGTGCTTTTGCAGAGGCTTCTATGACCACAGCTTATGAGAAAAAGTGGCCTCTTTGTCTTAGCACAAAAAATACTGTTCTTAAGAAGTACGATGGAAGATTCAAGGACATATTTCAAGAAGTATATGAAGCCCAGTGGAAATCTAAGTATGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGGTCACTTATGCACTTAAAAGCGAAGGTGGTTTTGTTTGGGCATGCAAGAATTATGATGGAGATGTACAAAGTGATTTCTTAGCCCAAGGTTTTGGATCTCTTGGATTGATGACTTCAATACTGGTGTGCCCAGATGGAAAGAATATAGAAGCTGAAGCTGCCCATGGTACAGTTACTCGCCATTATAGAATCCACCAAAAAGGAGGTGAAACGAGCACAAACAGCATAGCTTCTATTTTTGCTTGGACAAGAGAGCTTGCACACAGGGCAAAGTTGGATGACAATGCTAAACTGTTGGATTTCACTCGAAAGCTGGAAGCAGCTTGTATTGGAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCGCTAAATATTCATGGACCTAAGGTTGCTAGGAACCACTACTTGAACACGGAAGAGTTCATTGATGCCGTCGCAGCAGAACTAAGAGCAAAGCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

256

Amino Acids

28.57

Weight (kDa)

5.7

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	18 - 247	2.1e-51	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	2 cut(s)	406, 672
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	3 cut(s)	197, 369, 472
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	211, 224, 420, 715
AluBI	AGCT	9 cut(s)	140, 263, 455, 461, 533, 559, 616, 626, 763
AluI	AGCT	9 cut(s)	140, 263, 455, 461, 533, 559, 616, 626, 763
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	406, 672
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	4 cut(s)	263, 461, 623, 743
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	686
AxyI	CCTNAGG	1 cut(s)	690
BaeGI	GKGCMC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	4 cut(s)	250, 448, 635, 755
BccI	CCATC	3 cut(s)	194, 353, 431
BceAI	ACGGC	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	41, 699
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	4 cut(s)	264, 462, 624, 744
BlsI	GCNGC	4 cut(s)	265, 463, 625, 745
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	704
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	724
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	388, 466, 660
Bse1I	ACTGG	2 cut(s)	241, 429
Bse21I	CCTNAGG	1 cut(s)	690
BseDI	CCNNGG	3 cut(s)	388, 466, 660
BseGI	GGATG	2 cut(s)	31, 586
BseNI	ACTGG	2 cut(s)	241, 429
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	250, 448, 635, 755
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	434, 521
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	398, 664
Bsp19I	CCATGG	1 cut(s)	466
BspANI	GGCC	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	704
BspPI	GGATC	2 cut(s)	406, 672
BspTI	CTTAAG	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	241, 429
BssECI	CCNNGG	3 cut(s)	388, 466, 660
BssMI	GATC	2 cut(s)	398, 664
BssNAI	GTATAC	1 cut(s)	49
BssT1I	CCWWGG	3 cut(s)	388, 466, 660
Bst1107I	GTATAC	1 cut(s)	49
Bst4CI	ACNGT	4 cut(s)	184, 475, 597, 640
Bst6I	CTCTTC	1 cut(s)	717
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	268, 346, 561
BstDEI	CTNAG	5 cut(s)	167, 252, 382, 690, 752
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	31, 586
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	2 cut(s)	401, 667
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	398, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 525, 569, 743
BstNSI	RCATGY	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	4 cut(s)	250, 448, 635, 755
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	398, 664
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	2 cut(s)	398, 664
BstZ17I	GTATAC	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	31, 586
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	268, 346, 561
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	196, 368, 471
CviAII	CATG	4 cut(s)	85, 345, 467, 683
CviQI	GTAC	3 cut(s)	196, 368, 471
DdeI	CTNAG	5 cut(s)	167, 252, 382, 690, 752
DpnI	GATC	2 cut(s)	400, 666
DpnII	GATC	2 cut(s)	398, 664
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	3 cut(s)	388, 466, 660
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	690
EcoT14I	CCWWGG	3 cut(s)	388, 466, 660
ErhI	CCWWGG	3 cut(s)	388, 466, 660
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	4 cut(s)	88, 348, 470, 686
FatI	CATG	4 cut(s)	84, 344, 466, 682
FauNDI	CATATG	1 cut(s)	272
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	264, 462, 624, 744
FokI	GGATG	2 cut(s)	38, 593
Fsp4HI	GCNGC	4 cut(s)	264, 462, 624, 744
FspBI	CTAG	2 cut(s)	41, 699
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	4 cut(s)	264, 462, 624, 744
HaeIII	GGCC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	4 cut(s)	88, 348, 470, 686
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	4 cut(s)	101, 207, 492, 644
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	14, 224
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	3 cut(s)	11, 59, 320
HpyCH4III	ACNGT	4 cut(s)	184, 475, 597, 640
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	7 cut(s)	8, 77, 90, 119, 314, 348, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 525, 569, 743
HpyF3I	CTNAG	5 cut(s)	167, 252, 382, 690, 752
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	88, 348, 470, 686
HspAI	GCGC	1 cut(s)	671
Kzo9I	GATC	2 cut(s)	398, 664
LpnPI	CCDG	9 cut(s)	27, 45, 252, 254, 410, 447, 553, 602, 633
Lsp1109I	GCAGC	4 cut(s)	250, 448, 635, 755
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	2 cut(s)	41, 699
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	304, 475
MalI	GATC	2 cut(s)	400, 666
MboI	GATC	2 cut(s)	398, 664
MboII	GAAGA	3 cut(s)	43, 216, 734
MflI	RGATCY	2 cut(s)	398, 664
MhlI	GDGCHC	2 cut(s)	434, 521
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	558, 579
MnlI	CCTC	3 cut(s)	115, 168, 500
MseI	TTAA	2 cut(s)	189, 318
MspCI	CTTAAG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	461, 525, 569, 743
NcoI	CCATGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	272
NdeII	GATC	2 cut(s)	398, 664
NlaIII	CATG	4 cut(s)	88, 348, 470, 686
NlaIV	GGNNCC	1 cut(s)	704
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	348
PaeI	GCATGC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	207, 492, 644
PkrI	GCNGC	4 cut(s)	265, 463, 625, 745
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	1 cut(s)	686
PsuI	RGATCY	2 cut(s)	398, 664
RsaI	GTAC	3 cut(s)	197, 369, 472
RsaNI	GTAC	3 cut(s)	196, 368, 471
SaqAI	TTAA	2 cut(s)	189, 318
SatI	GCNGC	4 cut(s)	264, 462, 624, 744
Sau3AI	GATC	2 cut(s)	398, 664
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	434, 521
SfaNI	GCATC	1 cut(s)	724
SinI	GGWCC	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	352
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	2 cut(s)	41, 699
StyI	CCWWGG	3 cut(s)	388, 466, 660
TaaI	ACNGT	4 cut(s)	184, 475, 597, 640
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	610
TasI	AATT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	3 cut(s)	207, 492, 644
Tru1I	TTAA	2 cut(s)	189, 318
Tru9I	TTAA	2 cut(s)	189, 318
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	4 cut(s)	263, 461, 623, 743
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	249, 273, 294, 671, 718
TspGWI	ACGGA	2 cut(s)	98, 734
TspRI	CASTG	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	686
XceI	RCATGY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	41, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.