Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Forward (+)

34756451 .. 34757838

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTCGCTTATGCACTTAAAAGCGAAGGTGGTTTTGGATCTCTTGGATTGATGACTTCAGTACTGGTGTGCTCAGATGGAAAGACTATAGAAGCTGAAGCTGCCCATGGTACAGTTACTTGCCATTATAGAATCCACCAAAAAGGAGGTGAAACCAGCACAAACAACATAGCTTCTATTTTTTCTTGGACAAGAGGGCTTGCACACAGGGTTGCTAGGAACTACTACTTGAACACGGAAGAGTTCATTGATGCCGTCGCAGCAGAACTAAGAGCAAAGCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

95

Amino Acids

10.28

Weight (kDa)

6.89

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	11 - 92	8.3e-11	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	42, 117
AfaI	GTAC	2 cut(s)	63, 112
AgsI	TTSAA	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	4 cut(s)	95, 101, 173, 280
AluI	AGCT	4 cut(s)	95, 101, 173, 280
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	101, 260
AsuHPI	GGTGA	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	88, 272
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	102, 261
BlsI	GCNGC	2 cut(s)	103, 262
BmcAI	AGTACT	1 cut(s)	63
BmsI	GCATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	88, 272
BsiHKAI	GWGCWC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	73, 269
BstDSI	CCRYGG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 260
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	88, 272
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	62, 111
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	5 cut(s)	95, 101, 173, 199, 280
CviKI_1	RGCY	5 cut(s)	95, 101, 173, 199, 280
CviQI	GTAC	2 cut(s)	62, 111
DdeI	CTNAG	2 cut(s)	73, 269
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	42, 117
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	110
FaiI	YATR	5 cut(s)	12, 89, 108, 129, 170
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	102, 261
Fsp4HI	GCNGC	2 cut(s)	102, 261
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	2 cut(s)	102, 261
Hin1II	CATG	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	132
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	14, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 260
HpyF3I	CTNAG	2 cut(s)	73, 269
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	50, 169, 193
Lsp1109I	GCAGC	2 cut(s)	88, 272
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	140, 188
MseI	TTAA	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	101, 260
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	103, 262
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	2 cut(s)	63, 112
RsaNI	GTAC	2 cut(s)	62, 111
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	102, 261
Sau3AI	GATC	1 cut(s)	38
ScaI	AGTACT	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	6 cut(s)	31, 97, 103, 151, 175, 282
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	87
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	101, 260
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	251
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.