RH3BG327800

Isocitrate dehydrogenase NADP

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG327800.1

Sequence Viewer

Length: 1236 bp
ATGGAGTTCGAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGGAGATGAGATGACTCGAGTTTTCTGGAAATCAATTAAGGATAAGCTTATTTTCCCCTTTTTGGATCTGGACATCAAGTACTTTGACCTTGGTCTTCCTCATCGTGATGCCACTAATGATAAAGTTACTGTTGAAAGTGCAGAGGCAACTCTTAGGTACAATGTAGCAATCAAATGCGCCACTGTTTCGACAGATGCAAATCGCATGAAGGAGTATAACTTGAAGCAACTGTGGAGGAGTCCCAATGTGACTATTAGGAACATTTTGAATGGTACTGTTTTCAGAGAACCGATTCTTTGCAAGAACGTTCCTCGCCTTATCCCAGGCTGGACAAAGACAATATGCATTGGAAGACATGCTTTCGGTGATCAATATCGATCAATTGATTTAGTCATAAAAGGACCTGGGAAACTGAAATTGCTTTTTGTTCCAGAAGGAAAGGATGAGAAGACTGAACTGGATGTATACAACTTTACAGGGGAAGGGGGAGTTGCACTTGCCATGTGCAACGTTGATGAGTCAATCCGTGCTTTTGCAGAGGCTTCTATGACCACAGCTTATGAGAAAAAGTGGCCACTTTATCTTAGCACAAAAAATACTGTTCTTAAGAAGTACGATGGAAGATTCAAGGACATATTTCAAGAAGTATATGAAGCCCAGTGGAAATCTAAGTATGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGGTGGCTTATGCACTTAAAAGTGAAGGTGGTTATGTTTGGGCATGCAAGAATTATGATGGAGATGTGCAAAGTGATTTCTTAGCTCAAGGTTTTGGATCTCTTGGATTGATGACATCAGTACTGGTGTGCCCAGATGGAAAGACCATAGAAGCTGAAGCTGCTCATGGTACAGTTACTCGGCATTATAGAGTTCACCAGAAAGGTGGTGAAACCAGCACAAACAGCATAGCTTCAATTTTTGCTTGGACAAGAGGGCTTGCACACAGGGCAAAGTTGGATGACAATGCTAAATTGTTGGATTTCACTCAGAAGCTGGAAGAAGCTTGTATTGGAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCACTAATTCTTCATGGACCTAAGCTTGCTAGGAACCACTACTTGAACACGGAGGAGTTCATTGATGCCGTGGCTGCAGAACTGAAAGCAAAGCTTTCTTGA

Protein Analysis

411

Amino Acids

46.34

Weight (kDa)

6.77

Isoelectric Point (pI)

20.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 7 - 402 1e-78 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AclI AACGTT 2 cut(s) 354, 558
AclWI GGATC 3 cut(s) 120, 871, 1137
AcoI YGGCCR 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 6 cut(s) 128, 206, 322, 662, 888, 937
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 653
AgsI TTSAA 7 cut(s) 182, 271, 316, 676, 689, 1002, 1180
AjnI CCWGG 2 cut(s) 370, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
Alw26I GTCTC 1 cut(s) 758
AlwI GGATC 3 cut(s) 120, 871, 1137
AlwNI CAGNNNCTG 1 cut(s) 1081
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 3 cut(s) 728, 926, 1208
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 449, 1151
AsuHPI GGTGA 3 cut(s) 425, 953, 986
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 449, 1151
BaeGI GKGCMC 1 cut(s) 899
BalI TGGCCA 1 cut(s) 622
BbsI GAAGAC 3 cut(s) 134, 406, 503
BbvI GCAGC 3 cut(s) 715, 913, 1195
BccI CCATC 5 cut(s) 37, 41, 659, 818, 896
BceAI ACGGC 1 cut(s) 1187
BciT130I CCWGG 2 cut(s) 372, 453
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 758
BfaI CTAG 1 cut(s) 1164
BfmI CTRYAG 1 cut(s) 1209
BfrI CTTAAG 1 cut(s) 653
BisI GCNGC 3 cut(s) 729, 927, 1209
BlsI GCNGC 3 cut(s) 730, 928, 1210
BmcAI AGTACT 2 cut(s) 128, 888
Bme1390I CCNGG 2 cut(s) 372, 453
Bme18I GGWCC 2 cut(s) 449, 1151
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 449, 1151
BmiI GGNNCC 1 cut(s) 1169
BmrFI CCNGG 2 cut(s) 372, 453
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 3 cut(s) 145, 232, 1189
BmuI ACTGGG 1 cut(s) 700
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 3 cut(s) 134, 406, 503
Bpu10I CCTNAGC 1 cut(s) 1155
BpuEI CTTGAG 1 cut(s) 837
Bsa29I ATCGAT 1 cut(s) 424
BsaBI GATNNNNATC 2 cut(s) 246, 420
BsaJI CCNNGG 5 cut(s) 136, 370, 452, 1125, 1203
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 3 cut(s) 510, 706, 894
Bse8I GATNNNNATC 2 cut(s) 246, 420
BseBI CCWGG 2 cut(s) 372, 453
BseCI ATCGAT 1 cut(s) 424
BseDI CCNNGG 5 cut(s) 136, 370, 452, 1125, 1203
BseGI GGATG 3 cut(s) 496, 514, 1051
BseJI GATNNNNATC 2 cut(s) 246, 420
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 1088
BseNI ACTGG 3 cut(s) 510, 706, 894
BseRI GAGGAG 2 cut(s) 298, 1202
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 3 cut(s) 715, 913, 1195
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 1 cut(s) 622
BshVI ATCGAT 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 758
BsmBI CGTCTC 1 cut(s) 758
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 622
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 899
Bsp143I GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 1 cut(s) 1087
BspDI ATCGAT 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 1169
BspMAI CTGCAG 1 cut(s) 1213
BspPI GGATC 3 cut(s) 120, 871, 1137
BspTI CTTAAG 1 cut(s) 653
BsrI ACTGG 3 cut(s) 510, 706, 894
BssECI CCNNGG 5 cut(s) 136, 370, 452, 1125, 1203
BssMI GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 2 cut(s) 136, 1125
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 372, 453
Bst4CI ACNGT 7 cut(s) 178, 232, 279, 325, 649, 940, 1105
BstAFI CTTAAG 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 733, 811, 1026, 1161
BstDEI CTNAG 6 cut(s) 200, 632, 717, 847, 1074, 1155
BstDSI CCRYGG 1 cut(s) 1203
BstF5I GGATG 3 cut(s) 496, 514, 1051
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 6 cut(s) 18, 115, 418, 428, 866, 1132
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
BstMWI GCNNNNNNNGC 4 cut(s) 926, 990, 1034, 1208
BstNI CCWGG 2 cut(s) 372, 453
BstNSI RCATGY 2 cut(s) 407, 813
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 370, 451
BstSFI CTRYAG 1 cut(s) 1209
BstSLI GKGCMC 1 cut(s) 899
BstV1I GCAGC 3 cut(s) 715, 913, 1195
BstV2I GAAGAC 3 cut(s) 134, 406, 503
BstX2I RGATCY 3 cut(s) 112, 863, 1129
BstXI CCANNNNNNTGG 1 cut(s) 971
BstYI RGATCY 3 cut(s) 112, 863, 1129
BstZ17I GTATAC 1 cut(s) 514
Bsu15I ATCGAT 1 cut(s) 424
BsuRI GGCC 1 cut(s) 622
BsuTUI ATCGAT 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 3 cut(s) 496, 514, 1051
BtsIMutI CAGTG 2 cut(s) 228, 713
Cac8I GCNNGC 4 cut(s) 733, 811, 1026, 1161
CaiI CAGNNNCTG 1 cut(s) 1081
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 449, 1151
ClaI ATCGAT 1 cut(s) 424
Csp6I GTAC 6 cut(s) 127, 205, 321, 661, 887, 936
CviAII CATG 6 cut(s) 253, 404, 550, 810, 932, 1148
CviQI GTAC 6 cut(s) 127, 205, 321, 661, 887, 936
DdeI CTNAG 6 cut(s) 200, 632, 717, 847, 1074, 1155
DpnI GATC 6 cut(s) 17, 114, 417, 427, 865, 1131
DpnII GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
EaeI YGGCCR 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 136, 1125
Eco47I GGWCC 2 cut(s) 449, 1151
Eco57I CTGAAG 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 370, 451
EcoT14I CCWWGG 2 cut(s) 136, 1125
EcoT22I ATGCAT 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 136, 1125
Esp3I CGTCTC 1 cut(s) 758
FaeI CATG 6 cut(s) 256, 407, 553, 813, 935, 1151
FalI AAGNNNNNCTT 3 cut(s) 391, 423, 1212
FaqI GGGAC 1 cut(s) 273
FatI CATG 6 cut(s) 252, 403, 549, 809, 931, 1147
FauNDI CATATG 1 cut(s) 737
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 729, 927, 1209
FokI GGATG 3 cut(s) 503, 521, 1058
Fsp4HI GCNGC 3 cut(s) 729, 927, 1209
FspBI CTAG 1 cut(s) 1164
GlaI GCGC 1 cut(s) 226
GluI GCNGC 3 cut(s) 729, 927, 1209
HaeIII GGCC 1 cut(s) 622
HhaI GCGC 1 cut(s) 227
Hin1II CATG 6 cut(s) 256, 407, 553, 813, 935, 1151
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 4 cut(s) 92, 1089, 1157, 1226
HinfI GANTC 6 cut(s) 61, 286, 340, 566, 672, 1109
HphI GGTGA 3 cut(s) 425, 953, 986
Hpy166II GTNNAC 2 cut(s) 514, 961
Hpy188I TCNGA 2 cut(s) 332, 1077
Hpy188III TCNNGA 7 cut(s) 10, 73, 116, 152, 479, 689, 1233
Hpy8I GTNNAC 2 cut(s) 514, 961
HpyAV CCTTC 4 cut(s) 250, 476, 524, 785
HpyCH4III ACNGT 7 cut(s) 178, 232, 279, 325, 649, 940, 1105
HpyCH4IV ACGT 2 cut(s) 354, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 926, 990, 1034, 1208
HpyF3I CTNAG 6 cut(s) 200, 632, 717, 847, 1074, 1155
HpySE526I ACGT 2 cut(s) 354, 558
Hsp92II CATG 6 cut(s) 256, 407, 553, 813, 935, 1151
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
Lsp1109I GCAGC 3 cut(s) 715, 913, 1195
LweI GCATC 3 cut(s) 145, 232, 1189
MaeI CTAG 1 cut(s) 1164
MaeII ACGT 2 cut(s) 354, 558
MaeIII GTNAC 3 cut(s) 172, 295, 940
MalI GATC 6 cut(s) 17, 114, 417, 427, 865, 1131
MboI GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
MboII GAAGA 7 cut(s) 25, 134, 411, 508, 681, 1097, 1136
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 3 cut(s) 112, 863, 1129
MhlI GDGCHC 1 cut(s) 899
MlsI TGGCCA 1 cut(s) 622
MluCI AATT 7 cut(s) 81, 429, 464, 817, 1002, 1058, 1140
MluNI TGGCCA 1 cut(s) 622
MlyI GAGTC 3 cut(s) 55, 295, 575
MmeI TCCRAC 2 cut(s) 1023, 1044
MnlI CCTC 7 cut(s) 156, 184, 276, 369, 580, 1013, 1180
Mox20I TGGCCA 1 cut(s) 622
Mph1103I ATGCAT 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 1 cut(s) 622
MseI TTAA 3 cut(s) 84, 654, 783
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 622
MspCI CTTAAG 1 cut(s) 653
MspR9I CCNGG 2 cut(s) 372, 453
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 2 cut(s) 372, 453
MwoI GCNNNNNNNGC 4 cut(s) 926, 990, 1034, 1208
NdeI CATATG 1 cut(s) 737
NdeII GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
NlaIII CATG 6 cut(s) 256, 407, 553, 813, 935, 1151
NlaIV GGNNCC 1 cut(s) 1169
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 395
NspI RCATGY 2 cut(s) 407, 813
PaeI GCATGC 1 cut(s) 813
PaeR7I CTCGAG 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 3 cut(s) 340, 672, 1109
PkrI GCNGC 3 cut(s) 730, 928, 1210
PleI GAGTC 3 cut(s) 55, 294, 574
PpsI GAGTC 3 cut(s) 55, 294, 574
PpuMI RGGWCCY 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 138
Psp1406I AACGTT 2 cut(s) 354, 558
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 370, 451
PspGI CCWGG 2 cut(s) 370, 451
PspN4I GGNNCC 1 cut(s) 1169
PspPI GGNCC 2 cut(s) 449, 1151
PspPPI RGGWCCY 1 cut(s) 449
PspXI VCTCGAGB 1 cut(s) 63
PstI CTGCAG 1 cut(s) 1213
PstNI CAGNNNCTG 1 cut(s) 1081
PsuI RGATCY 3 cut(s) 112, 863, 1129
RsaI GTAC 6 cut(s) 128, 206, 322, 662, 888, 937
RsaNI GTAC 6 cut(s) 127, 205, 321, 661, 887, 936
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 3 cut(s) 84, 654, 783
SatI GCNGC 3 cut(s) 729, 927, 1209
Sau3AI GATC 6 cut(s) 15, 112, 415, 425, 863, 1129
Sau96I GGNCC 2 cut(s) 449, 1151
ScaI AGTACT 2 cut(s) 128, 888
SchI GAGTC 3 cut(s) 55, 295, 575
ScrFI CCNGG 2 cut(s) 372, 453
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 3 cut(s) 145, 232, 1189
SfcI CTRYAG 1 cut(s) 1209
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 2 cut(s) 449, 1151
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 3 cut(s) 63, 653, 852
SmoI CTYRAG 3 cut(s) 63, 653, 852
SphI GCATGC 1 cut(s) 813
Sse9I AATT 7 cut(s) 81, 429, 464, 817, 1002, 1058, 1140
SspMI CTAG 1 cut(s) 1164
StyD4I CCNGG 2 cut(s) 370, 451
StyI CCWWGG 2 cut(s) 136, 1125
TaaI ACNGT 7 cut(s) 178, 232, 279, 325, 649, 940, 1105
TaiI ACGT 2 cut(s) 357, 561
TaqI TCGA 4 cut(s) 9, 64, 236, 424
TasI AATT 7 cut(s) 81, 429, 464, 817, 1002, 1058, 1140
TatI WGTACW 2 cut(s) 126, 886
TfiI GAWTC 3 cut(s) 340, 672, 1109
Tru1I TTAA 3 cut(s) 84, 654, 783
Tru9I TTAA 3 cut(s) 84, 654, 783
TscAI CASTG 2 cut(s) 235, 713
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 3 cut(s) 728, 926, 1208
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 6 cut(s) 269, 714, 738, 759, 1136, 1183
TspGWI ACGGA 3 cut(s) 63, 563, 1199
TspRI CASTG 2 cut(s) 235, 713
Vha464I CTTAAG 1 cut(s) 653
VpaK11BI GGWCC 2 cut(s) 449, 1151
XceI RCATGY 2 cut(s) 407, 813
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 1164
ZrmI AGTACT 2 cut(s) 128, 888
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.