Rmu_sc0002227.1_g000003

Isocitrate dehydrogenase NADP

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002227.1
Physical Location & Seq
Reverse (-)
28459 .. 32597
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002227.1_g000003.1.cds

Sequence Viewer

Length: 1617 bp
atggcgttcgagaagatcaaggtcgctaaccccatcgtcgagatggacggagatgagatgactcgaattttctggaaatcaatcaaggataagcttattctcccctttttggatttggacattaagtactttgaccttggtcttcctcaccgtgatgccactgatgataaagttaccgttgaaagtgcagaggctactctcaagtacaatgtagcaatcaaatgcgcgactatcacaccagatgaagctcgcatgaaggagtttagcttgaagcaaatgtggaggagtcccaatgggactattaggaatattttgaatggtactgttttcagagaaccgattctttgcaagaacattcctcgcctaatcccaggttggacgaagccaatatgcattggaagacatgctttcggtgatcaatatcgagcaactgatacagttatcaaaggacctgggaaactgaaattgctgtttgttccagaaggaaaggatgagaagactgaactggaagtgtacaactttacaggggaaggcggagtagcaattgccatgtacaacaccgatgagtcaatccgtgcttttgcagaagcttctatgaacacagcttatgagaaaaagtggcctctttatcttagcacaaaaaacactattcttaagaagtatgacggaagattcaaggacatatttcaggaagtttacgaagctcattggaaatccaagtatgaagctgctggcatatggtatgaacatcgtctcattgatgatatggtggcttatgcacttaaaagtgaaggtggttatgtttgggcatgcaagaattatgatggagatgtgcaaagtgatttcttagctcaagttccagaaggaaaggatgagaagactgaactggaagtgtacaactttacaggggaaggcggagtagcaattgccatgtacaacaccgatgagtcaatccgtgcttttgcagaagcttctatgaacacagcttatgagaaaaagtggcctctttatcttagcacaaaaaacactattcttaagaagtatgacggaagattcaaggacatatttcaggaagtttacgaagctcattggaaatccaagtatgaagctgctggcatatggtatgaacatcgtctcattgatgatatggtggcttatgcacttaaaagtgaaggtggttatgtttgggcatgcaagaattatgatggagatgtgcaaagtgatttcttagctcaaggttttggatctcttggattgatgacatcagtactggtgtgcccagatggaaagaccatagaagctgaagctgctcatggtacagttactcggcattatagagttcaccagaaaggtggtgaaaccagcacaaacagcatagcttcaatttttgcttggacgagagggcttgcacacagggcaaagttggatgacaatgctaaattgttggatttcactcagaagctggaagaagcttgtattggaactgtggaatctgggaaaatgaccaaggatcttgcactaattcttcatggacctaagcttgctaggaaccactacttgaacacagaggagttcattgatgccgtggctgcagaactgaaagcaaagctttcttga

Protein Analysis

538

Amino Acids

60.94

Weight (kDa)

5.85

Isoelectric Point (pI)

20.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 534, 915
AclWI GGATC 2 cut(s) 1252, 1518
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 1323
AfaI GTAC 9 cut(s) 128, 206, 322, 515, 554, 896, 935, 1269, 1318
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 2 cut(s) 653, 1034
AgsI TTSAA 7 cut(s) 182, 271, 316, 676, 1057, 1383, 1561
AjnI CCWGG 2 cut(s) 370, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 1461, 1493
Alw26I GTCTC 2 cut(s) 758, 1139
AlwI GGATC 2 cut(s) 1252, 1518
AlwNI CAGNNNCTG 1 cut(s) 1462
AoxI GGCC 2 cut(s) 620, 1001
ApeKI GCWGC 4 cut(s) 728, 1109, 1307, 1589
ApoI RAATTY 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 449, 1532
AsuHPI GGTGA 4 cut(s) 140, 425, 1334, 1367
AvaII GGWCC 2 cut(s) 449, 1532
BaeGI GKGCMC 1 cut(s) 1280
BbsI GAAGAC 4 cut(s) 134, 406, 503, 884
BbvI GCAGC 4 cut(s) 715, 1096, 1294, 1576
BccI CCATC 5 cut(s) 37, 41, 818, 1199, 1277
BceAI ACGGC 1 cut(s) 1568
BciT130I CCWGG 2 cut(s) 372, 453
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 758, 1139
BfaI CTAG 1 cut(s) 1545
BfmI CTRYAG 1 cut(s) 1590
BfrI CTTAAG 2 cut(s) 653, 1034
BisI GCNGC 4 cut(s) 729, 1110, 1308, 1590
BlsI GCNGC 4 cut(s) 730, 1111, 1309, 1591
BmcAI AGTACT 2 cut(s) 128, 1269
Bme1390I CCNGG 2 cut(s) 372, 453
Bme18I GGWCC 2 cut(s) 449, 1532
BmgT120I GGNCC 2 cut(s) 449, 1532
BmiI GGNNCC 1 cut(s) 1550
BmrFI CCNGG 2 cut(s) 372, 453
BmsI GCATC 2 cut(s) 145, 1570
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 4 cut(s) 134, 406, 503, 884
Bpu10I CCTNAGC 1 cut(s) 1536
BpuEI CTTGAG 3 cut(s) 185, 837, 1218
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 5 cut(s) 136, 370, 452, 1506, 1584
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 3 cut(s) 510, 891, 1275
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 2 cut(s) 372, 453
BseDI CCNNGG 5 cut(s) 136, 370, 452, 1506, 1584
BseGI GGATG 3 cut(s) 496, 877, 1432
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 1469
BseNI ACTGG 3 cut(s) 510, 891, 1275
BseRI GAGGAG 2 cut(s) 298, 1583
BseSI GKGCMC 1 cut(s) 1280
BseXI GCAGC 4 cut(s) 715, 1096, 1294, 1576
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 622, 1003
BslFI GGGAC 2 cut(s) 273, 310
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 758, 1139
BsmBI CGTCTC 2 cut(s) 758, 1139
BsmFI GGGAC 2 cut(s) 273, 310
BsnI GGCC 2 cut(s) 622, 1003
Bsp1286I GDGCHC 1 cut(s) 1280
Bsp1407I TGTACA 4 cut(s) 513, 552, 894, 933
Bsp143I GATC 4 cut(s) 15, 415, 1244, 1510
BspACI CCGC 2 cut(s) 534, 915
BspANI GGCC 2 cut(s) 622, 1003
BspCNI CTCAG 1 cut(s) 1468
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 1550
BspMAI CTGCAG 1 cut(s) 1594
BspPI GGATC 2 cut(s) 1252, 1518
BspTI CTTAAG 2 cut(s) 653, 1034
BsrGI TGTACA 4 cut(s) 513, 552, 894, 933
BsrI ACTGG 3 cut(s) 510, 891, 1275
BssECI CCNNGG 5 cut(s) 136, 370, 452, 1506, 1584
BssMI GATC 4 cut(s) 15, 415, 1244, 1510
BssT1I CCWWGG 2 cut(s) 136, 1506
Bst2UI CCWGG 2 cut(s) 372, 453
Bst4CI ACNGT 6 cut(s) 152, 178, 325, 439, 1321, 1486
BstAFI CTTAAG 2 cut(s) 653, 1034
BstAUI TGTACA 4 cut(s) 513, 552, 894, 933
BstC8I GCNNGC 7 cut(s) 250, 733, 811, 1114, 1192, 1407, 1542
BstDEI CTNAG 6 cut(s) 632, 847, 1013, 1228, 1455, 1536
BstDSI CCRYGG 1 cut(s) 1584
BstF5I GGATG 3 cut(s) 496, 877, 1432
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 4 cut(s) 18, 418, 1247, 1513
BstMAI GTCTC 2 cut(s) 758, 1139
BstMBI GATC 4 cut(s) 15, 415, 1244, 1510
BstMWI GCNNNNNNNGC 4 cut(s) 1307, 1371, 1415, 1589
BstNI CCWGG 2 cut(s) 372, 453
BstNSI RCATGY 3 cut(s) 407, 813, 1194
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 370, 451
BstSFI CTRYAG 1 cut(s) 1590
BstSLI GKGCMC 1 cut(s) 1280
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 715, 1096, 1294, 1576
BstV2I GAAGAC 4 cut(s) 134, 406, 503, 884
BstX2I RGATCY 2 cut(s) 1244, 1510
BstXI CCANNNNNNTGG 1 cut(s) 1352
BstYI RGATCY 2 cut(s) 1244, 1510
BsuRI GGCC 2 cut(s) 622, 1003
BtgI CCRYGG 1 cut(s) 1584
BtsCI GGATG 3 cut(s) 496, 877, 1432
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 7 cut(s) 250, 733, 811, 1114, 1192, 1407, 1542
CaiI CAGNNNCTG 1 cut(s) 1462
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 449, 1532
Csp6I GTAC 9 cut(s) 127, 205, 321, 514, 553, 895, 934, 1268, 1317
CviAII CATG 8 cut(s) 253, 404, 550, 810, 931, 1191, 1313, 1529
CviQI GTAC 9 cut(s) 127, 205, 321, 514, 553, 895, 934, 1268, 1317
DdeI CTNAG 6 cut(s) 632, 847, 1013, 1228, 1455, 1536
DpnI GATC 4 cut(s) 17, 417, 1246, 1512
DpnII GATC 4 cut(s) 15, 415, 1244, 1510
EciI GGCGGA 2 cut(s) 549, 930
Eco130I CCWWGG 2 cut(s) 136, 1506
Eco47I GGWCC 2 cut(s) 449, 1532
Eco57I CTGAAG 1 cut(s) 1323
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 370, 451
EcoT14I CCWWGG 2 cut(s) 136, 1506
EcoT22I ATGCAT 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 136, 1506
Esp3I CGTCTC 2 cut(s) 758, 1139
FaeI CATG 8 cut(s) 256, 407, 553, 813, 934, 1194, 1316, 1532
FalI AAGNNNNNCTT 3 cut(s) 391, 423, 1593
FaqI GGGAC 2 cut(s) 273, 310
FatI CATG 8 cut(s) 252, 403, 549, 809, 930, 1190, 1312, 1528
FauNDI CATATG 2 cut(s) 737, 1118
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 4 cut(s) 729, 1110, 1308, 1590
FokI GGATG 3 cut(s) 503, 884, 1439
Fsp4HI GCNGC 4 cut(s) 729, 1110, 1308, 1590
FspBI CTAG 1 cut(s) 1545
GlaI GCGC 1 cut(s) 226
GluI GCNGC 4 cut(s) 729, 1110, 1308, 1590
HaeIII GGCC 2 cut(s) 622, 1003
HhaI GCGC 1 cut(s) 227
Hin1II CATG 8 cut(s) 256, 407, 553, 813, 934, 1194, 1316, 1532
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 6 cut(s) 92, 588, 969, 1470, 1538, 1607
HinfI GANTC 8 cut(s) 61, 286, 340, 566, 672, 947, 1053, 1490
HphI GGTGA 4 cut(s) 140, 425, 1334, 1367
Hpy166II GTNNAC 5 cut(s) 514, 697, 895, 1078, 1342
Hpy188I TCNGA 2 cut(s) 332, 1458
Hpy188III TCNNGA 8 cut(s) 10, 40, 73, 479, 689, 860, 1070, 1614
Hpy8I GTNNAC 5 cut(s) 514, 697, 895, 1078, 1342
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 7 cut(s) 250, 476, 524, 785, 857, 905, 1166
HpyCH4III ACNGT 6 cut(s) 152, 178, 325, 439, 1321, 1486
HpyF10VI GCNNNNNNNGC 4 cut(s) 1307, 1371, 1415, 1589
HpyF3I CTNAG 6 cut(s) 632, 847, 1013, 1228, 1455, 1536
Hsp92II CATG 8 cut(s) 256, 407, 553, 813, 934, 1194, 1316, 1532
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 15, 415, 1244, 1510
Lsp1109I GCAGC 4 cut(s) 715, 1096, 1294, 1576
LweI GCATC 2 cut(s) 145, 1570
MaeI CTAG 1 cut(s) 1545
MaeIII GTNAC 2 cut(s) 172, 1321
MalI GATC 4 cut(s) 17, 417, 1246, 1512
MboI GATC 4 cut(s) 15, 415, 1244, 1510
MboII GAAGA 9 cut(s) 25, 134, 411, 508, 681, 889, 1062, 1478, 1517
MfeI CAATTG 2 cut(s) 543, 924
MflI RGATCY 2 cut(s) 1244, 1510
MhlI GDGCHC 1 cut(s) 1280
MluCI AATT 9 cut(s) 66, 464, 543, 817, 924, 1198, 1383, 1439, 1521
MlyI GAGTC 4 cut(s) 55, 295, 575, 956
MmeI TCCRAC 3 cut(s) 356, 1404, 1425
MnlI CCTC 8 cut(s) 156, 184, 276, 369, 633, 1014, 1394, 1561
Mph1103I ATGCAT 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 5 cut(s) 123, 654, 783, 1035, 1164
MslI CAYNNNNRTG 1 cut(s) 153
MspCI CTTAAG 2 cut(s) 653, 1034
MspR9I CCNGG 2 cut(s) 372, 453
MunI CAATTG 2 cut(s) 543, 924
MvaI CCWGG 2 cut(s) 372, 453
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 4 cut(s) 1307, 1371, 1415, 1589
NdeI CATATG 2 cut(s) 737, 1118
NdeII GATC 4 cut(s) 15, 415, 1244, 1510
NlaIII CATG 8 cut(s) 256, 407, 553, 813, 934, 1194, 1316, 1532
NlaIV GGNNCC 1 cut(s) 1550
NmeAIII GCCGAG 1 cut(s) 1306
NsiI ATGCAT 1 cut(s) 395
NspI RCATGY 3 cut(s) 407, 813, 1194
PaeI GCATGC 2 cut(s) 813, 1194
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 4 cut(s) 340, 672, 1053, 1490
PkrI GCNGC 4 cut(s) 730, 1111, 1309, 1591
PleI GAGTC 4 cut(s) 55, 294, 574, 955
PpsI GAGTC 4 cut(s) 55, 294, 574, 955
PpuMI RGGWCCY 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 370, 451
PspGI CCWGG 2 cut(s) 370, 451
PspN4I GGNNCC 1 cut(s) 1550
PspPI GGNCC 2 cut(s) 449, 1532
PspPPI RGGWCCY 1 cut(s) 449
PstI CTGCAG 1 cut(s) 1594
PstNI CAGNNNCTG 1 cut(s) 1462
PsuI RGATCY 2 cut(s) 1244, 1510
RsaI GTAC 9 cut(s) 128, 206, 322, 515, 554, 896, 935, 1269, 1318
RsaNI GTAC 9 cut(s) 127, 205, 321, 514, 553, 895, 934, 1268, 1317
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 5 cut(s) 123, 654, 783, 1035, 1164
SatI GCNGC 4 cut(s) 729, 1110, 1308, 1590
Sau3AI GATC 4 cut(s) 15, 415, 1244, 1510
Sau96I GGNCC 2 cut(s) 449, 1532
ScaI AGTACT 2 cut(s) 128, 1269
SchI GAGTC 4 cut(s) 55, 295, 575, 956
ScrFI CCNGG 2 cut(s) 372, 453
SduI GDGCHC 1 cut(s) 1280
SfaNI GCATC 2 cut(s) 145, 1570
SfcI CTRYAG 1 cut(s) 1590
SinI GGWCC 2 cut(s) 449, 1532
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 5 cut(s) 200, 653, 852, 1034, 1233
SmoI CTYRAG 5 cut(s) 200, 653, 852, 1034, 1233
SphI GCATGC 2 cut(s) 813, 1194
Sse9I AATT 9 cut(s) 66, 464, 543, 817, 924, 1198, 1383, 1439, 1521
SsiI CCGC 2 cut(s) 534, 915
SspI AATATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 1545
StyD4I CCNGG 2 cut(s) 370, 451
StyI CCWWGG 2 cut(s) 136, 1506
TaaI ACNGT 6 cut(s) 152, 178, 325, 439, 1321, 1486
TaqI TCGA 4 cut(s) 9, 39, 64, 424
TasI AATT 9 cut(s) 66, 464, 543, 817, 924, 1198, 1383, 1439, 1521
TatI WGTACW 7 cut(s) 126, 204, 513, 552, 894, 933, 1267
TfiI GAWTC 4 cut(s) 340, 672, 1053, 1490
Tru1I TTAA 5 cut(s) 123, 654, 783, 1035, 1164
Tru9I TTAA 5 cut(s) 123, 654, 783, 1035, 1164
TscAI CASTG 1 cut(s) 166
TseI GCWGC 4 cut(s) 728, 1109, 1307, 1589
TspGWI ACGGA 5 cut(s) 63, 563, 681, 944, 1062
TspRI CASTG 1 cut(s) 166
Vha464I CTTAAG 2 cut(s) 653, 1034
VpaK11BI GGWCC 2 cut(s) 449, 1532
XapI RAATTY 1 cut(s) 66
XceI RCATGY 3 cut(s) 407, 813, 1194
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 1545
ZrmI AGTACT 2 cut(s) 128, 1269
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.