Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019534.1

Orthogroup ID

OG0008565

Physical Location & Seq

Genomic Coordinates Reverse (-)

11179 .. 13026

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019534.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcggaagctcaaaaccactgtttgcctaatcacagccactactgctggcctcaccttccatgccttcaaccctaattccctctccgattcctccccagactttcccgacaaaattcggacagccgttcacggcgtcgttcgctcttcccgcgcaatctccaccattgcattgactgccgttgactacaagttcaccttgcggggactccccgtggactcagatgagtaccgtcgcaagctatctgaggttcattttcgatcagcttggagaattctgaaattgtgtgaagccaataaaggattttatgtgaaagctggtcaatttgttgcagctctgcgtcaggttccaaaagaatactcatcaactctttcctcattacaggatcaggcagttccttgtcactttaaagctattgaagaagtactaattcgtaatctggggcacaacctgtcagatacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

154

Amino Acids

17.17

Weight (kDa)

9.54

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65950 AT1G65950
fragaria_vesca	FvH4_1g30310 FvH4_1g30310
malus_domestica	MD17G1270600.v1.1
prunus_persica	Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1
pyrus_communis	pycom17g26890
rosa_chinensis	RchiOBHm_Chr3g0490181
rosa_laevigata	RLG00000022896
rosa_multiflora	Rmu_sc0012371.1_g000008 Rmu_sc0019534.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393720
rosa_rugosa	Rorug03G0242900
rosa_samantha	Rh3AG291300 Rh3BG328300 Rh3CG325300 Rh3DG324400
rosa_wichuraiana	Rw3G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	4, 151, 202
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	114, 273
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	230, 426
AgsI	TTSAA	2 cut(s)	70, 419
AluBI	AGCT	6 cut(s)	10, 241, 266, 317, 335, 413
AluI	AGCT	6 cut(s)	10, 241, 266, 317, 335, 413
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	114, 273
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	46, 187
BaeGI	GKGCMC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	344
BceAI	ACGGC	3 cut(s)	110, 148, 164
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmcAI	AGTACT	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	234, 237
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	260, 385
BspACI	CCGC	3 cut(s)	4, 151, 202
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	233, 238
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	393
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	260, 385
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	22, 233
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	49, 239
BstDEI	CTNAG	2 cut(s)	220, 246
BstDSI	CCRYGG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	263, 388
BstMBI	GATC	2 cut(s)	260, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 141, 150, 176
BstSLI	GKGCMC	1 cut(s)	447
BstSNI	TACGTA	1 cut(s)	462
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	49, 239
CfoI	GCGC	1 cut(s)	155
CseI	GACGC	2 cut(s)	124, 329
Csp6I	GTAC	2 cut(s)	229, 425
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	2 cut(s)	229, 425
DdeI	CTNAG	2 cut(s)	220, 246
DpnI	GATC	2 cut(s)	262, 387
DpnII	GATC	2 cut(s)	260, 385
DraI	TTTAAA	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco105I	TACGTA	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	273
FaeI	CATG	1 cut(s)	65
FaiI	YATR	2 cut(s)	63, 309
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	61
FauI	CCCGC	2 cut(s)	158, 195
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	51
HgaI	GACGC	2 cut(s)	124, 329
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	89, 207, 218
HphI	GGTGA	2 cut(s)	46, 187
Hpy166II	GTNNAC	4 cut(s)	130, 184, 195, 217
Hpy188I	TCNGA	6 cut(s)	88, 120, 223, 247, 279, 457
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	4 cut(s)	130, 184, 195, 217
Hpy99I	CGWCG	2 cut(s)	140, 237
HpyAV	CCTTC	2 cut(s)	67, 76
HpyCH4III	ACNGT	2 cut(s)	22, 233
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	2 cut(s)	170, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 141, 150, 176
HpyF3I	CTNAG	2 cut(s)	220, 246
HpySE526I	ACGT	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	260, 385
LguI	GCTCTTC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	33, 111, 303, 329, 368, 374, 425
Lsp1109I	GCAGC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	262, 387
MboI	GATC	2 cut(s)	260, 385
MboII	GAAGA	2 cut(s)	138, 431
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	6 cut(s)	76, 114, 273, 281, 323, 429
MlyI	GAGTC	2 cut(s)	201, 212
MnlI	CCTC	5 cut(s)	62, 92, 103, 241, 385
MseI	TTAA	1 cut(s)	408
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	44, 141, 150, 176
NdeII	GATC	2 cut(s)	260, 385
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	201, 212
PpsI	GAGTC	2 cut(s)	201, 212
Ppu21I	YACGTR	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	348
RsaI	GTAC	2 cut(s)	230, 426
RsaNI	GTAC	2 cut(s)	229, 425
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	260, 385
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	2 cut(s)	201, 212
SduI	GDGCHC	1 cut(s)	447
SnaBI	TACGTA	1 cut(s)	462
Sse9I	AATT	6 cut(s)	76, 114, 273, 281, 323, 429
SsiI	CCGC	3 cut(s)	4, 151, 202
TaaI	ACNGT	2 cut(s)	22, 233
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	259
TasI	AATT	6 cut(s)	76, 114, 273, 281, 323, 429
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	114, 273
ZrmI	AGTACT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.