Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012371.1

Orthogroup ID

OG0008565

Physical Location & Seq

Genomic Coordinates Forward (+)

46842 .. 60315

Gene Structure 13474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012371.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

atgcggaagctcaaaaccacagtttgcctaatcacagccactactgctggcctcaccttccatgccttcaaccctaattccctctccgattcctccccagactttcccgacaaaattcggacagccgttcacggcgtcgttcgctcttcccgcgcaatctccaccgtcagtttctactcaatttttcttctccttgtgaatttatcgtcttcattgctaatgtgtttgtgtgaatcgcagattgcattgactgccgttgactacaagttcaccttgcgtggactccccgtggactcagatgagtaccgtcgcaagctatctgaggttcattttcgatcagcttggagaattctgaaattgtgtgaagccaacaaaggattttatgtgaaagctggtcaatttgttgcagctctgcgtcaggttccaaaagaatactcatcaactctttcctcattacaggatcaggcagttccttgtcactttaaagctattgaagaagtactaattcgtaatctggggcacaacctgtcagatacgtttttgtcactggatgaacaacccttagctgctgcatcaattgctcaggtacacaaagcagttctgaaggatcatcaagcagtagcaatcaagttaaagaacttccttttcattcaacagtttttcccagagtacagatttggatggctggtagcagagtttgtgcaggctatctctcttgagcttgattttattcaagaagctggaaactctgagagaactgccaataatttcataaacaacaaatgggtcaaggttcctcatgtattttgggatttgacaactaaacaagttctgacgatggaattctgtactggacacaaggttgatgatgtagactatctgaaggaaaggaaaatagatccagtgaaggtggccaaagtgttgttggaaatgtttgctgaaatgatttttatccatggtttcttgcacggagatccgcaccctggtaatatattagtttctccagaagggcagaatggcttttctttggttcttctagatcatggaatatacaaacaactcaatgataaatttaggttggactactgtcagctctggaaggctctaattcttctcgactcaaaaaagttgcagcatttgggggagcagtttggtgttgcaaagtattctaaatactttcctgtcatttttacaggaagaactgttgacagtacatcagctcttgggaaaggaatgtcaactaaagagaaaaggaaattaaagcaagagctgcagtccctaaagatggaggacatatcttcatttatggaatctttgccatctgacttcctcacaatattgcgtacagacggactattgaggtctattgctagtaagttgggcgcttcacaaatagtcaggatactagcttatgccaaatatgcactatatggtctttccccaaagttgaatccagaatctgacaatgctattaaagtaaagttctcacaattgacagcatatgtgagttaccttcagttaaggcttattcttgaggtcctagagctgctttcttggatggcaaaggtcaagcagtttctatttaatttttatgaaaagacaggtggtgccctcgtgctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

540

Amino Acids

61.1

Weight (kDa)

9.06

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65950 AT1G65950
fragaria_vesca	FvH4_1g30310 FvH4_1g30310
malus_domestica	MD17G1270600.v1.1
prunus_persica	Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1 Prupe.3G015600_v2.0.a1
pyrus_communis	pycom17g26890
rosa_chinensis	RchiOBHm_Chr3g0490181
rosa_laevigata	RLG00000022896
rosa_multiflora	Rmu_sc0012371.1_g000008 Rmu_sc0019534.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393720
rosa_rugosa	Rorug03G0242900
rosa_samantha	Rh3AG291300 Rh3BG328300 Rh3CG325300 Rh3DG324400
rosa_wichuraiana	Rw3G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1607
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	4, 151, 977
AclWI	GGATC	4 cut(s)	468, 615, 893, 968
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	5 cut(s)	114, 199, 348, 842, 1070
AcuI	CTGAAG	3 cut(s)	623, 902, 1499
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	7 cut(s)	305, 501, 588, 671, 850, 1213, 1345
AfiI	CCNNNNNNNGG	2 cut(s)	983, 1285
AgsI	TTSAA	5 cut(s)	70, 494, 653, 734, 1450
AjnI	CCWGG	1 cut(s)	982
AlwI	GGATC	4 cut(s)	468, 615, 893, 968
AlwNI	CAGNNNCTG	1 cut(s)	1460
AoxI	GGCC	2 cut(s)	49, 912
ApeKI	GCWGC	6 cut(s)	407, 566, 569, 1132, 1270, 1546
ApoI	RAATTY	5 cut(s)	114, 199, 348, 842, 1070
AspLEI	GCGC	2 cut(s)	155, 1385
AspS9I	GGNCC	1 cut(s)	1537
AsuHPI	GGTGA	2 cut(s)	46, 262
AvaII	GGWCC	1 cut(s)	1537
BaeGI	GKGCMC	2 cut(s)	522, 1612
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	1 cut(s)	1607
BauI	CACGAG	1 cut(s)	1613
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	419, 553, 556, 1144, 1257, 1533
BccI	CCATC	5 cut(s)	675, 832, 1279, 1327, 1552
BceAI	ACGGC	3 cut(s)	110, 148, 239
BciT130I	CCWGG	1 cut(s)	984
BciVI	GTATCC	1 cut(s)	1395
BfaI	CTAG	4 cut(s)	1037, 1371, 1406, 1541
BfmI	CTRYAG	1 cut(s)	1271
BfoI	RGCGCY	1 cut(s)	1386
BfuI	GTATCC	1 cut(s)	1395
BisI	GCNGC	6 cut(s)	408, 567, 570, 1133, 1271, 1547
BlsI	GCNGC	6 cut(s)	409, 568, 571, 1134, 1272, 1548
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	984
Bme18I	GGWCC	1 cut(s)	1537
BmgT120I	GGNCC	1 cut(s)	1537
BmiI	GGNNCC	3 cut(s)	423, 795, 1609
BmrFI	CCNGG	1 cut(s)	984
BmsI	GCATC	1 cut(s)	581
BoxI	GACNNNNGTC	1 cut(s)	1086
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	2 cut(s)	562, 582
BpuEI	CTTGAG	2 cut(s)	737, 1553
BsaBI	GATNNNNATC	1 cut(s)	950
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	288, 955, 982
Bsc4I	CCNNNNNNNGG	2 cut(s)	983, 1285
Bse1I	ACTGG	3 cut(s)	552, 856, 902
Bse3DI	GCAATG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	950
BseBI	CCWGG	1 cut(s)	984
BseDI	CCNNGG	3 cut(s)	288, 955, 982
BseGI	GGATG	3 cut(s)	556, 686, 1563
BseJI	GATNNNNATC	1 cut(s)	950
BseLI	CCNNNNNNNGG	2 cut(s)	983, 1285
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	4 cut(s)	309, 312, 596, 741
BseNI	ACTGG	3 cut(s)	552, 856, 902
BseSI	GKGCMC	2 cut(s)	522, 1612
BseXI	GCAGC	6 cut(s)	419, 553, 556, 1144, 1257, 1533
BsgI	GTGCAG	1 cut(s)	722
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	51, 914
BshNI	GGYRCC	1 cut(s)	1607
BslFI	GGGAC	1 cut(s)	1261
BslI	CCNNNNNNNGG	2 cut(s)	983, 1285
BsmFI	GGGAC	1 cut(s)	1261
BsnI	GGCC	2 cut(s)	51, 914
Bsp1286I	GDGCHC	2 cut(s)	522, 1612
Bsp143I	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
Bsp19I	CCATGG	1 cut(s)	955
BspACI	CCGC	3 cut(s)	4, 151, 977
BspANI	GGCC	2 cut(s)	51, 914
BspCNI	CTCAG	4 cut(s)	308, 313, 595, 742
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	423, 795, 1609
BspMAI	CTGCAG	1 cut(s)	1275
BspPI	GGATC	4 cut(s)	468, 615, 893, 968
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	1607
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	552, 856, 902
BssECI	CCNNGG	3 cut(s)	288, 955, 982
BssMI	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	1613
BssT1I	CCWWGG	1 cut(s)	955
Bst2BI	CACGAG	1 cut(s)	1613
Bst2UI	CCWGG	1 cut(s)	984
Bst4CI	ACNGT	7 cut(s)	22, 166, 308, 657, 1088, 1204, 1211
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	3 cut(s)	251, 578, 1270
BstC8I	GCNNGC	3 cut(s)	49, 314, 705
BstDEI	CTNAG	5 cut(s)	295, 321, 562, 582, 750
BstDSI	CCRYGG	2 cut(s)	288, 955
BstF5I	GGATG	3 cut(s)	556, 686, 1563
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	1386
BstHHI	GCGC	2 cut(s)	155, 1385
BstKTI	GATC	6 cut(s)	338, 463, 610, 901, 976, 1042
BstMBI	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 141, 150, 251, 578, 1270, 1421
BstNI	CCWGG	1 cut(s)	984
BstPAI	GACNNNNGTC	1 cut(s)	1086
BstSCI	CCNGG	1 cut(s)	982
BstSFI	CTRYAG	1 cut(s)	1271
BstSLI	GKGCMC	2 cut(s)	522, 1612
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	6 cut(s)	419, 553, 556, 1144, 1257, 1533
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	898, 973
BstYI	RGATCY	2 cut(s)	898, 973
BsuI	GTATCC	1 cut(s)	1395
BsuRI	GGCC	2 cut(s)	51, 914
BtgI	CCRYGG	2 cut(s)	288, 955
BtsCI	GGATG	3 cut(s)	556, 686, 1563
BtsIMutI	CAGTG	2 cut(s)	545, 909
Cac8I	GCNNGC	3 cut(s)	49, 314, 705
CaiI	CAGNNNCTG	1 cut(s)	1460
CfoI	GCGC	2 cut(s)	155, 1385
Cfr13I	GGNCC	1 cut(s)	1537
CseI	GACGC	2 cut(s)	124, 404
Csp6I	GTAC	7 cut(s)	304, 500, 587, 670, 849, 1212, 1344
CviAII	CATG	4 cut(s)	62, 800, 956, 1043
CviQI	GTAC	7 cut(s)	304, 500, 587, 670, 849, 1212, 1344
DdeI	CTNAG	5 cut(s)	295, 321, 562, 582, 750
DpnI	GATC	6 cut(s)	337, 462, 609, 900, 975, 1041
DpnII	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
DraI	TTTAAA	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	1537
Eco57I	CTGAAG	3 cut(s)	623, 902, 1499
EcoO109I	RGGNCCY	1 cut(s)	1537
EcoRI	GAATTC	2 cut(s)	348, 842
EcoRII	CCWGG	1 cut(s)	982
EcoT14I	CCWWGG	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	955
FaeI	CATG	4 cut(s)	65, 803, 959, 1046
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	1261
FatI	CATG	4 cut(s)	61, 799, 955, 1042
FauI	CCCGC	1 cut(s)	158
FauNDI	CATATG	1 cut(s)	1501
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	6 cut(s)	408, 567, 570, 1133, 1271, 1547
FokI	GGATG	3 cut(s)	563, 693, 1570
Fsp4HI	GCNGC	6 cut(s)	408, 567, 570, 1133, 1271, 1547
FspBI	CTAG	4 cut(s)	1037, 1371, 1406, 1541
GlaI	GCGC	2 cut(s)	154, 1384
GluI	GCNGC	6 cut(s)	408, 567, 570, 1133, 1271, 1547
GsuI	CTGGAG	1 cut(s)	987
HaeII	RGCGCY	1 cut(s)	1386
HaeIII	GGCC	2 cut(s)	51, 914
HgaI	GACGC	2 cut(s)	124, 404
HhaI	GCGC	2 cut(s)	155, 1385
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	65, 803, 959, 1046
Hin6I	GCGC	2 cut(s)	153, 1383
HinP1I	GCGC	2 cut(s)	153, 1383
HincII	GTYRAC	3 cut(s)	259, 1207, 1239
HindII	GTYRAC	3 cut(s)	259, 1207, 1239
HinfI	GANTC	8 cut(s)	89, 233, 282, 293, 1118, 1310, 1450, 1457
HphI	GGTGA	2 cut(s)	46, 262
Hpy166II	GTNNAC	9 cut(s)	130, 259, 270, 281, 292, 589, 874, 1207, 1239
Hpy8I	GTNNAC	9 cut(s)	130, 259, 270, 281, 292, 589, 874, 1207, 1239
Hpy99I	CGWCG	2 cut(s)	140, 312
HpyAV	CCTTC	8 cut(s)	67, 76, 598, 877, 901, 1001, 1093, 1523
HpyCH4III	ACNGT	7 cut(s)	22, 166, 308, 657, 1088, 1204, 1211
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	9 cut(s)	245, 407, 572, 703, 967, 1132, 1160, 1273, 1424
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 141, 150, 251, 578, 1270, 1421
HpyF3I	CTNAG	5 cut(s)	295, 321, 562, 582, 750
HpySE526I	ACGT	1 cut(s)	536
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	65, 803, 959, 1046
HspAI	GCGC	2 cut(s)	153, 1383
Kzo9I	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	1144
Lsp1109I	GCAGC	6 cut(s)	419, 553, 556, 1144, 1257, 1533
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	4 cut(s)	1037, 1371, 1406, 1541
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	3 cut(s)	476, 543, 1508
MalI	GATC	6 cut(s)	337, 462, 609, 900, 975, 1041
MboI	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
MboII	GAAGA	8 cut(s)	138, 179, 201, 506, 1025, 1103, 1209, 1290
MfeI	CAATTG	2 cut(s)	576, 1490
MflI	RGATCY	2 cut(s)	898, 973
MhlI	GDGCHC	2 cut(s)	522, 1612
MlsI	TGGCCA	1 cut(s)	914
MluNI	TGGCCA	1 cut(s)	914
MlyI	GAGTC	3 cut(s)	276, 287, 1112
MmeI	TCCRAC	2 cut(s)	906, 1059
Mox20I	TGGCCA	1 cut(s)	914
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	6 cut(s)	483, 632, 1259, 1473, 1520, 1584
Msp20I	TGGCCA	1 cut(s)	914
MspR9I	CCNGG	1 cut(s)	984
MunI	CAATTG	2 cut(s)	576, 1490
MvaI	CCWGG	1 cut(s)	984
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	7 cut(s)	44, 141, 150, 251, 578, 1270, 1421
NcoI	CCATGG	1 cut(s)	955
NdeI	CATATG	1 cut(s)	1501
NdeII	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
NlaIII	CATG	4 cut(s)	65, 803, 959, 1046
NlaIV	GGNNCC	3 cut(s)	423, 795, 1609
NmuCI	GTSAC	2 cut(s)	476, 543
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	5 cut(s)	89, 233, 1310, 1450, 1457
PkrI	GCNGC	6 cut(s)	409, 568, 571, 1134, 1272, 1548
PleI	GAGTC	3 cut(s)	276, 287, 1112
PpsI	GAGTC	3 cut(s)	276, 287, 1112
PpuMI	RGGWCCY	1 cut(s)	1537
PshAI	GACNNNNGTC	1 cut(s)	1086
Psp5II	RGGWCCY	1 cut(s)	1537
Psp6I	CCWGG	1 cut(s)	982
PspGI	CCWGG	1 cut(s)	982
PspN4I	GGNNCC	3 cut(s)	423, 795, 1609
PspPI	GGNCC	1 cut(s)	1537
PspPPI	RGGWCCY	1 cut(s)	1537
PstI	CTGCAG	1 cut(s)	1275
PstNI	CAGNNNCTG	1 cut(s)	1460
PsuI	RGATCY	2 cut(s)	898, 973
RsaI	GTAC	7 cut(s)	305, 501, 588, 671, 850, 1213, 1345
RsaNI	GTAC	7 cut(s)	304, 500, 587, 670, 849, 1212, 1344
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	6 cut(s)	483, 632, 1259, 1473, 1520, 1584
SatI	GCNGC	6 cut(s)	408, 567, 570, 1133, 1271, 1547
Sau3AI	GATC	6 cut(s)	335, 460, 607, 898, 973, 1039
Sau96I	GGNCC	1 cut(s)	1537
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	3 cut(s)	276, 287, 1112
ScrFI	CCNGG	1 cut(s)	984
SduI	GDGCHC	2 cut(s)	522, 1612
SfaNI	GCATC	1 cut(s)	581
SfcI	CTRYAG	1 cut(s)	1271
SinI	GGWCC	1 cut(s)	1537
SmlI	CTYRAG	2 cut(s)	716, 1532
SmoI	CTYRAG	2 cut(s)	716, 1532
SsiI	CCGC	3 cut(s)	4, 151, 977
SspI	AATATT	1 cut(s)	1338
SspMI	CTAG	4 cut(s)	1037, 1371, 1406, 1541
StyD4I	CCNGG	1 cut(s)	982
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	7 cut(s)	22, 166, 308, 657, 1088, 1204, 1211
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	2 cut(s)	334, 1116
TatI	WGTACW	4 cut(s)	499, 669, 848, 1211
TfiI	GAWTC	5 cut(s)	89, 233, 1310, 1450, 1457
Tru1I	TTAA	6 cut(s)	483, 632, 1259, 1473, 1520, 1584
Tru9I	TTAA	6 cut(s)	483, 632, 1259, 1473, 1520, 1584
TscAI	CASTG	2 cut(s)	552, 909
TseFI	GTSAC	2 cut(s)	476, 543
TseI	GCWGC	6 cut(s)	407, 566, 569, 1132, 1270, 1546
Tsp45I	GTSAC	2 cut(s)	476, 543
TspDTI	ATGAA	7 cut(s)	201, 317, 567, 637, 760, 1290, 1608
TspGWI	ACGGA	2 cut(s)	984, 1365
TspRI	CASTG	2 cut(s)	552, 909
VpaK11BI	GGWCC	1 cut(s)	1537
XapI	RAATTY	5 cut(s)	114, 199, 348, 842, 1070
XbaI	TCTAGA	1 cut(s)	1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	4 cut(s)	1037, 1371, 1406, 1541
ZrmI	AGTACT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.