Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014650

Physical Location & Seq

Genomic Coordinates Reverse (-)

1804233 .. 1806491

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGATGAAGGCTAACAGAAATATTTTGCAGGCAAAGGTAACTATCCAAAATTACTATCAATATCGTCATGTAGACAACCCTGGTTGGAAGCTGGGGTGGATATGGGCACAGGATGAGGTAACCTGGTCAATGAAGGGAGCCTTTGCCACCAAACAAGGAAACTGCTCATCCTTCAAGTCAGATACATTACACTCCTGTGTGAAAGATCCCGAAATACTTGATCTCATGCCAGATTCTTCCCCAGAGAACATGTCAGTAGGCTGCTGCCGTGGTGGCCTTCTTGATGCATGGGCTATCAATCCCTCCAAGTCATTCTCTTCATTTGAAATTAAAGTGGGCAATTTGCAGCAAAATTCTTTTGGAACTGCACCTCTCAACCTTACTTTGATGGCACCAGGTCTTGGATACACTTGCGGACCACTTTTGGATGTCGATCCTACAGTTTCTTTGGATATTGGTGGTAAAAGACAAGTTCAAGTTTTCAGAACATGGAAATCAACATGCACTTATTCAAGTTTTGTAGCTGCCAAAACACCGGTCTGTTGTGTTTCACTCTCTACATTTTACAATCCTATCATCACATCATGCCCCTTGTGTAGCTGTGGATGCAGATTAGCAGATAAAACTACAGAGACATGCCTAAGAACCAGTTTCCCATTGATAACAGATGATGTTCAAAGTAATCCTGATGTGGTGAAATGCACTGATCATATGTGCCCTATTCGAGTTCATTGGCATATTATGAGCAACTATGTGGATCATTGGAGGGTAAAACTCACAGTTACTAACTATAACTATCATAAAAACTTCTTGGACTGGAACGTACTGGTTCAGCATCCGGGTTTCAGGCAGAAGGCAACAATATATAGTTTCAACAGTACAATGCTTCCTGCTGGGTTTAGAGATGAAGTTGCCCTGTTTTGGGGCATACCCTACGTTAACACAGAGCTGATTTCCACCAAGGAGGACCAAGTGGGTTCAGTCTCAACAGAGATGCTTTTGAAGAAGGACAAGGATTCCTTCACATTCTCAAATGGATGGGCTTTCCCTAGGAGACTGTATTTCAATGGAGAGAGTTGCCAGATGCCCCTACCAGACAGTTTCCCAACTTTACCAAATGCTGCTGTCTCCAATTTTGCAAAATCCTCACACTGTTTGTTCCTGCTTTTGACATTTTTGACTTCTCAGGCTTTGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

401

Amino Acids

44.93

Weight (kDa)

8.06

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	10 - 171	2.8e-52	COBRA-like protein
COB_C	PF25079	181 - 369	1e-42	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02160
malus_domestica	MD05G1114600.v1.1
prunus_persica	Prupe.8G159300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245661
rosa_laevigata	RLG00000015295
rosa_multiflora	Rmu_sc0008277.1_g000013 Rmu_sc0040933.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215140
rosa_rugosa	Rorug05G0515400 Rorug05G0515500 Rorug05G0515600 Rorug05G0515700
rosa_samantha	Rh6AG030100 Rh6BG027500 Rh6CG026800 Rh6DG026200
rosa_wichuraiana	Rw6G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	3 cut(s)	200, 428, 765
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	2 cut(s)	825, 880
AfiI	CCNNNNNNNGG	3 cut(s)	401, 921, 922
AflIII	ACRYGT	1 cut(s)	249
AgeI	ACCGGT	1 cut(s)	535
AgsI	TTSAA	8 cut(s)	175, 326, 476, 513, 677, 874, 1003, 1066
AjnI	CCWGG	3 cut(s)	79, 122, 394
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	91, 524, 600, 949
AluI	AGCT	4 cut(s)	91, 524, 600, 949
Alw26I	GTCTC	4 cut(s)	626, 988, 1048, 1132
AlwI	GGATC	3 cut(s)	200, 428, 765
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	5 cut(s)	261, 264, 346, 524, 1121
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	522, 554
AsiGI	ACCGGT	1 cut(s)	535
AspA2I	CCTAGG	1 cut(s)	1049
AspS9I	GGNCC	2 cut(s)	416, 967
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	416, 967
AvrII	CCTAGG	1 cut(s)	1049
BaeGI	GKGCMC	2 cut(s)	109, 719
BanI	GGYRCC	1 cut(s)	391
BbvI	GCAGC	5 cut(s)	248, 251, 358, 511, 1108
BccI	CCATC	2 cut(s)	382, 1032
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	3 cut(s)	81, 124, 396
BciVI	GTATCC	1 cut(s)	398
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	4 cut(s)	626, 988, 1048, 1132
BfaI	CTAG	1 cut(s)	1050
BfmI	CTRYAG	2 cut(s)	438, 627
BfuI	GTATCC	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	5 cut(s)	262, 265, 347, 525, 1122
BlnI	CCTAGG	1 cut(s)	1049
BlsI	GCNGC	5 cut(s)	263, 266, 348, 526, 1123
Bme1390I	CCNGG	4 cut(s)	81, 124, 396, 840
Bme18I	GGWCC	2 cut(s)	416, 967
BmgT120I	GGNCC	2 cut(s)	416, 967
BmiI	GGNNCC	2 cut(s)	139, 393
BmrFI	CCNGG	4 cut(s)	81, 124, 396, 840
BmsI	GCATC	5 cut(s)	274, 596, 844, 984, 1074
BpuMI	CCSGG	1 cut(s)	840
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	79, 268, 960, 1049
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 921, 922
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	3 cut(s)	648, 821, 831
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	81, 124, 396
BseDI	CCNNGG	4 cut(s)	79, 268, 960, 1049
BseGI	GGATG	6 cut(s)	118, 167, 433, 611, 835, 1043
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	401, 921, 922
BseMII	CTCAG	1 cut(s)	1199
BseNI	ACTGG	3 cut(s)	648, 821, 831
BseSI	GKGCMC	2 cut(s)	109, 719
BseXI	GCAGC	5 cut(s)	248, 251, 358, 511, 1108
BseYI	CCCAGC	2 cut(s)	91, 893
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	536, 839
BslI	CCNNNNNNNGG	3 cut(s)	401, 921, 922
BsmAI	GTCTC	4 cut(s)	626, 988, 1048, 1132
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	109, 719
Bsp143I	GATC	5 cut(s)	205, 220, 433, 706, 757
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	1198
BspLI	GGNNCC	2 cut(s)	139, 393
BspPI	GGATC	3 cut(s)	200, 428, 765
BspT107I	GGYRCC	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	648, 821, 831
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	4 cut(s)	79, 268, 960, 1049
BssMI	GATC	5 cut(s)	205, 220, 433, 706, 757
BssT1I	CCWWGG	2 cut(s)	960, 1049
Bst2UI	CCWGG	3 cut(s)	81, 124, 396
Bst4CI	ACNGT	6 cut(s)	442, 781, 878, 1059, 1100, 1154
Bst6I	CTCTTC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	641, 1185
BstDSI	CCRYGG	1 cut(s)	268
BstEII	GGTNACC	1 cut(s)	118
BstF5I	GGATG	6 cut(s)	118, 167, 433, 611, 835, 1043
BstKTI	GATC	5 cut(s)	208, 223, 436, 709, 760
BstMAI	GTCTC	4 cut(s)	626, 988, 1048, 1132
BstMBI	GATC	5 cut(s)	205, 220, 433, 706, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 606
BstNI	CCWGG	3 cut(s)	81, 124, 396
BstNSI	RCATGY	3 cut(s)	253, 504, 639
BstPI	GGTNACC	1 cut(s)	118
BstSCI	CCNGG	4 cut(s)	79, 122, 394, 838
BstSFI	CTRYAG	2 cut(s)	438, 627
BstSLI	GKGCMC	2 cut(s)	109, 719
BstV1I	GCAGC	5 cut(s)	248, 251, 358, 511, 1108
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	6 cut(s)	118, 167, 433, 611, 835, 1043
BtsIMutI	CAGTG	2 cut(s)	702, 1150
Cac8I	GCNNGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	416, 967
CsiI	ACCWGGT	2 cut(s)	122, 394
Csp6I	GTAC	2 cut(s)	824, 879
CspAI	ACCGGT	1 cut(s)	535
CviAII	CATG	8 cut(s)	68, 226, 250, 288, 489, 501, 585, 636
CviQI	GTAC	2 cut(s)	824, 879
DdeI	CTNAG	2 cut(s)	641, 1185
DpnI	GATC	5 cut(s)	207, 222, 435, 708, 759
DpnII	GATC	5 cut(s)	205, 220, 433, 706, 757
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	960, 1049
Eco47I	GGWCC	2 cut(s)	416, 967
Eco91I	GGTNACC	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	118
EcoRII	CCWGG	3 cut(s)	79, 122, 394
EcoT14I	CCWWGG	2 cut(s)	960, 1049
EcoT22I	ATGCAT	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	960, 1049
FaeI	CATG	8 cut(s)	71, 229, 253, 291, 492, 504, 588, 639
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 1004, 1036
FatI	CATG	8 cut(s)	67, 225, 249, 287, 488, 500, 584, 635
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	262, 265, 347, 525, 1122
FokI	GGATG	6 cut(s)	125, 154, 440, 618, 822, 1050
Fsp4HI	GCNGC	5 cut(s)	262, 265, 347, 525, 1122
FspBI	CTAG	1 cut(s)	1050
GluI	GCNGC	5 cut(s)	262, 265, 347, 525, 1122
GsaI	CCCAGC	2 cut(s)	95, 897
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	2 cut(s)	536, 839
Hin1II	CATG	8 cut(s)	71, 229, 253, 291, 492, 504, 588, 639
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HinfI	GANTC	2 cut(s)	233, 1016
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	2 cut(s)	536, 839
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	2 cut(s)	73, 940
Hpy188I	TCNGA	2 cut(s)	181, 485
Hpy188III	TCNNGA	3 cut(s)	209, 281, 686
Hpy8I	GTNNAC	2 cut(s)	73, 940
HpyAV	CCTTC	6 cut(s)	127, 181, 287, 847, 1000, 1030
HpyCH4III	ACNGT	6 cut(s)	442, 781, 878, 1059, 1100, 1154
HpyCH4IV	ACGT	2 cut(s)	822, 936
HpyCH4V	TGCA	8 cut(s)	28, 287, 346, 368, 504, 609, 702, 1139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 606
HpyF3I	CTNAG	2 cut(s)	641, 1185
HpySE526I	ACGT	2 cut(s)	822, 936
Hsp92II	CATG	8 cut(s)	71, 229, 253, 291, 492, 504, 588, 639
Ksp22I	TGATCA	1 cut(s)	706
KspAI	GTTAAC	1 cut(s)	940
Kzo9I	GATC	5 cut(s)	205, 220, 433, 706, 757
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	5 cut(s)	248, 251, 358, 511, 1108
LweI	GCATC	5 cut(s)	274, 596, 844, 984, 1074
MabI	ACCWGGT	2 cut(s)	122, 394
MaeI	CTAG	1 cut(s)	1050
MaeII	ACGT	2 cut(s)	822, 936
MaeIII	GTNAC	3 cut(s)	37, 118, 781
MalI	GATC	5 cut(s)	207, 222, 435, 708, 759
MboI	GATC	5 cut(s)	205, 220, 433, 706, 757
MboII	GAAGA	3 cut(s)	228, 309, 1015
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	109, 719
MluCI	AATT	5 cut(s)	49, 327, 340, 352, 1132
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	109, 313, 381, 759, 958, 1156
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	2 cut(s)	330, 939
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	2 cut(s)	536, 839
MspR9I	CCNGG	4 cut(s)	81, 124, 396, 840
MvaI	CCWGG	3 cut(s)	81, 124, 396
MwoI	GCNNNNNNNGC	2 cut(s)	273, 606
NciI	CCSGG	1 cut(s)	840
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	5 cut(s)	205, 220, 433, 706, 757
NlaIII	CATG	8 cut(s)	71, 229, 253, 291, 492, 504, 588, 639
NlaIV	GGNNCC	2 cut(s)	139, 393
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	3 cut(s)	253, 504, 639
OliI	CACNNNNGTG	1 cut(s)	195
PciI	ACATGT	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	233, 1016
PflMI	CCANNNNNTGG	1 cut(s)	401
PinAI	ACCGGT	1 cut(s)	535
PkrI	GCNGC	5 cut(s)	263, 266, 348, 526, 1123
PscI	ACATGT	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	79, 122, 394
PspEI	GGTNACC	1 cut(s)	118
PspFI	CCCAGC	2 cut(s)	91, 893
PspGI	CCWGG	3 cut(s)	79, 122, 394
PspN4I	GGNNCC	2 cut(s)	139, 393
PspPI	GGNCC	2 cut(s)	416, 967
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	825, 880
RsaNI	GTAC	2 cut(s)	824, 879
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	330, 939
SatI	GCNGC	5 cut(s)	262, 265, 347, 525, 1122
Sau3AI	GATC	5 cut(s)	205, 220, 433, 706, 757
Sau96I	GGNCC	2 cut(s)	416, 967
ScrFI	CCNGG	4 cut(s)	81, 124, 396, 840
SduI	GDGCHC	2 cut(s)	109, 719
SexAI	ACCWGGT	2 cut(s)	122, 394
SfaNI	GCATC	5 cut(s)	274, 596, 844, 984, 1074
SfcI	CTRYAG	2 cut(s)	438, 627
SinI	GGWCC	2 cut(s)	416, 967
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	5 cut(s)	49, 327, 340, 352, 1132
SsiI	CCGC	1 cut(s)	414
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	1050
StyD4I	CCNGG	4 cut(s)	79, 122, 394, 838
StyI	CCWWGG	2 cut(s)	960, 1049
TaaI	ACNGT	6 cut(s)	442, 781, 878, 1059, 1100, 1154
TaiI	ACGT	2 cut(s)	825, 939
TaqI	TCGA	2 cut(s)	432, 724
TasI	AATT	5 cut(s)	49, 327, 340, 352, 1132
TatI	WGTACW	1 cut(s)	878
TfiI	GAWTC	2 cut(s)	233, 1016
Tru1I	TTAA	2 cut(s)	330, 939
Tru9I	TTAA	2 cut(s)	330, 939
TscAI	CASTG	2 cut(s)	709, 1157
TseI	GCWGC	5 cut(s)	261, 264, 346, 524, 1121
TspDTI	ATGAA	5 cut(s)	20, 146, 309, 719, 921
TspRI	CASTG	2 cut(s)	709, 1157
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	416, 967
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	3 cut(s)	253, 504, 639
XmaJI	CCTAGG	1 cut(s)	1049
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	1050
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.