Rroxscaffold_7G00215140

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014650
Physical Location & Seq
Forward (+)
65785473 .. 65788619
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215140.1

Sequence Viewer

Length: 1347 bp
ATGGCATTCATCAGCATCCCCTCTAATTATTTGTGGCCTATCGCACTAGTGTTGATGATAGTAGTTGCTATGGGCAGTTTATCAGATTGCTATGATCCCTTGGATCCAAATGGAAATATAACAGTTATTTTCGACACTTACCAATGGGAAAATGATGGCTATTTGGCAAAAGTAACTATCCATAATTACTACCAATATCGTCATGTAGACATACCTGGTTGGAAGCTGGGATGGATATGGGCACAGAATGAGGTGATTTGGTCAATGAAGGGTGCCTTTGCCACCAAACAAGGAAACTGCTCATCCTTTAAGTCAGATATACCACACTCCTGTGTGAAACAGCCCGAAATAGTTGATCTCATGCCAGATTCTTCCCTAGAAAACATGTCAGTGGACTGCTGCCGTGGTGGCCTTCTTGATGCCTGGGCTATCAACCCCTCCAAGTCATTCTCTTCCTTTCAAATTAAAGTCGGAAATTTGCAGCAAAATTCTTTTGGAACTGCACCTCTCAACCTTACTTTGATGGCACCAGGTCTTGGATACACTTGCGGACCACTTTTGGATGTCGATCCTACAGTTTCTTTGGATATTGGTGGTAGAAGACAAGTTCAAGTTTTCAGAACATGGAAAACAACATGCACTTATTCAAGTTTTATAGCTGCCGAAACACCGGTCTGTTGTGTTTCACTCTCTACATTCTACAATCCTACCATCACATCATGCCCCTTGTGTAGCTGTGGATGCAGATTAGCAGATAAAACTACAGAGACGTGCATGAGAACCAGTTTCCCGTCGATAACAAATGATATTCAAAGTGATCTTGATGTGGTGAAATGCACTGATCATATGTGCCCTGTTCGAGTTCATTGGCATATTATGAGCAACTATGTGGATCATTGGAGAGTAAAACTTACAATTACTAACTATAACTATAATAAAATCTTCTCGGACTGGAACGTACTGGTTCAGCATCCAGGTTTCAGCCAGAAGACAACGATATATAGTTTCAACAGTACAATGCTACCTGCTGGGTTTAGAGGTGAAGTTGCCCTCTTTTGGGGTATACCCTACGTTAACACCGAGCTGATTTCCACTAAGAAGGACCAAGTGGGTTCAGTCTCCACAGAAATGCTTTTGAAGAAGGACATGGACTCATTCACATTCTCAAATGGATGGGCTTTCCCTAGGAGACTATATTTCAATGGAGAGAGTTGCCAGATGCCCCTACCGGACAGTTTCCCAACTTTACCAAATGGTGCTGTCTCCAATTTTGCAAAACCCTCACATTGTTTGTTCCTGCTTTTGACATTTTTGACTTGTCAGGCACTACTAGTTCCATGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

448

Amino Acids

50.3

Weight (kDa)

6.13

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 54 - 216 1.8e-55 COBRA-like protein
COB_C PF25079 226 - 261 1.1e-06 COBRA family C-terminal domain
COB_C PF25079 275 - 414 1.7e-36 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1033
AccB1I GGYRCC 2 cut(s) 272, 526
AccB7I CCANNNNNTGG 1 cut(s) 536
AccI GTMKAC 2 cut(s) 207, 1063
AciI CCGC 1 cut(s) 549
AclWI GGATC 5 cut(s) 89, 98, 111, 563, 900
AcsI RAATTY 2 cut(s) 475, 487
AfaI GTAC 2 cut(s) 960, 1015
AfiI CCNNNNNNNGG 3 cut(s) 536, 1056, 1057
AflIII ACRYGT 1 cut(s) 384
AgeI ACCGGT 1 cut(s) 670
AgsI TTSAA 7 cut(s) 461, 611, 648, 812, 1009, 1138, 1201
AhlI ACTAGT 2 cut(s) 46, 1330
AjiI CACGTC 1 cut(s) 771
AjnI CCWGG 4 cut(s) 214, 422, 529, 973
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 4 cut(s) 226, 659, 735, 1084
AluI AGCT 4 cut(s) 226, 659, 735, 1084
Alw26I GTCTC 4 cut(s) 761, 1123, 1183, 1267
AlwI GGATC 5 cut(s) 89, 98, 111, 563, 900
AoxI GGCC 2 cut(s) 35, 409
ApeKI GCWGC 3 cut(s) 399, 481, 659
ApoI RAATTY 2 cut(s) 475, 487
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AsiGI ACCGGT 1 cut(s) 670
AspA2I CCTAGG 1 cut(s) 1184
AspS9I GGNCC 2 cut(s) 551, 1102
AsuHPI GGTGA 3 cut(s) 265, 841, 1052
AvaII GGWCC 2 cut(s) 551, 1102
AvrII CCTAGG 1 cut(s) 1184
BaeGI GKGCMC 2 cut(s) 244, 854
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 2 cut(s) 272, 526
BbsI GAAGAC 2 cut(s) 607, 995
BbvI GCAGC 3 cut(s) 386, 493, 646
BccI CCATC 5 cut(s) 149, 225, 517, 719, 1167
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 4 cut(s) 216, 424, 531, 975
BciVI GTATCC 1 cut(s) 533
BclI TGATCA 1 cut(s) 841
BcoDI GTCTC 4 cut(s) 761, 1123, 1183, 1267
BcuI ACTAGT 2 cut(s) 46, 1330
BfaI CTAG 4 cut(s) 47, 377, 1185, 1331
BfmI CTRYAG 2 cut(s) 573, 762
BfuAI ACCTGC 1 cut(s) 1033
BfuI GTATCC 1 cut(s) 533
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 3 cut(s) 400, 482, 660
BlnI CCTAGG 1 cut(s) 1184
BlsI GCNGC 3 cut(s) 401, 483, 661
Bme1390I CCNGG 4 cut(s) 216, 424, 531, 975
Bme18I GGWCC 2 cut(s) 551, 1102
BmgBI CACGTC 1 cut(s) 771
BmgT120I GGNCC 2 cut(s) 551, 1102
BmiI GGNNCC 3 cut(s) 105, 274, 528
BmrFI CCNGG 4 cut(s) 216, 424, 531, 975
BmsI GCATC 5 cut(s) 24, 409, 731, 979, 1209
BpiI GAAGAC 2 cut(s) 607, 995
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 5 cut(s) 99, 403, 423, 1184, 1337
BsaWI WCCGGW 2 cut(s) 670, 1228
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 1056, 1057
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 3 cut(s) 783, 956, 966
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 4 cut(s) 216, 424, 531, 975
BseDI CCNNGG 5 cut(s) 99, 403, 423, 1184, 1337
BseGI GGATG 7 cut(s) 15, 236, 302, 568, 746, 970, 1178
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 3 cut(s) 536, 1056, 1057
BseNI ACTGG 3 cut(s) 783, 956, 966
BseSI GKGCMC 2 cut(s) 244, 854
BseXI GCAGC 3 cut(s) 386, 493, 646
BseYI CCCAGC 2 cut(s) 226, 1028
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 2 cut(s) 37, 411
BshNI GGYRCC 2 cut(s) 272, 526
BshTI ACCGGT 1 cut(s) 670
BsiSI CCGG 2 cut(s) 671, 1229
BslI CCNNNNNNNGG 3 cut(s) 536, 1056, 1057
BsmAI GTCTC 4 cut(s) 761, 1123, 1183, 1267
BsmBI CGTCTC 1 cut(s) 761
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 2 cut(s) 37, 411
Bsp1286I GDGCHC 2 cut(s) 244, 854
Bsp143I GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
Bsp19I CCATGG 1 cut(s) 1337
BspACI CCGC 1 cut(s) 549
BspANI GGCC 2 cut(s) 37, 411
BspLI GGNNCC 3 cut(s) 105, 274, 528
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 5 cut(s) 89, 98, 111, 563, 900
BspT107I GGYRCC 2 cut(s) 272, 526
BsrFI RCCGGY 1 cut(s) 670
BsrI ACTGG 3 cut(s) 783, 956, 966
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 5 cut(s) 99, 403, 423, 1184, 1337
BssMI GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
BssNAI GTATAC 1 cut(s) 1064
BssT1I CCWWGG 3 cut(s) 99, 1184, 1337
Bst1107I GTATAC 1 cut(s) 1064
Bst2UI CCWGG 4 cut(s) 216, 424, 531, 975
Bst4CI ACNGT 4 cut(s) 124, 577, 1013, 1235
Bst6I CTCTTC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 1095
BstDSI CCRYGG 2 cut(s) 403, 1337
BstF5I GGATG 7 cut(s) 15, 236, 302, 568, 746, 970, 1178
BstKTI GATC 7 cut(s) 97, 106, 358, 571, 820, 844, 895
BstMAI GTCTC 4 cut(s) 761, 1123, 1183, 1267
BstMBI GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
BstMWI GCNNNNNNNGC 2 cut(s) 408, 741
BstNI CCWGG 4 cut(s) 216, 424, 531, 975
BstNSI RCATGY 2 cut(s) 388, 639
BstSCI CCNGG 4 cut(s) 214, 422, 529, 973
BstSFI CTRYAG 2 cut(s) 573, 762
BstSLI GKGCMC 2 cut(s) 244, 854
BstV1I GCAGC 3 cut(s) 386, 493, 646
BstV2I GAAGAC 2 cut(s) 607, 995
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BstZ17I GTATAC 1 cut(s) 1064
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 2 cut(s) 37, 411
BtgI CCRYGG 2 cut(s) 403, 1337
BtrI CACGTC 1 cut(s) 771
BtsCI GGATG 7 cut(s) 15, 236, 302, 568, 746, 970, 1178
BtsIMutI CAGTG 2 cut(s) 396, 837
BveI ACCTGC 1 cut(s) 1033
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 551, 1102
CsiI ACCWGGT 2 cut(s) 214, 529
Csp6I GTAC 2 cut(s) 959, 1014
CspAI ACCGGT 1 cut(s) 670
CviAII CATG 9 cut(s) 203, 361, 385, 624, 636, 720, 775, 1147, 1338
CviQI GTAC 2 cut(s) 959, 1014
DdeI CTNAG 1 cut(s) 1095
DpnI GATC 7 cut(s) 96, 105, 357, 570, 819, 843, 894
DpnII GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco130I CCWWGG 3 cut(s) 99, 1184, 1337
Eco47I GGWCC 2 cut(s) 551, 1102
EcoRII CCWGG 4 cut(s) 214, 422, 529, 973
EcoT14I CCWWGG 3 cut(s) 99, 1184, 1337
ErhI CCWWGG 3 cut(s) 99, 1184, 1337
Esp3I CGTCTC 1 cut(s) 761
FaeI CATG 9 cut(s) 206, 364, 388, 627, 639, 723, 778, 1150, 1341
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 9 cut(s) 202, 360, 384, 623, 635, 719, 774, 1146, 1337
FauNDI CATATG 1 cut(s) 846
FbaI TGATCA 1 cut(s) 841
FblI GTMKAC 2 cut(s) 207, 1063
Fnu4HI GCNGC 3 cut(s) 400, 482, 660
FokI GGATG 7 cut(s) 2, 243, 289, 575, 753, 957, 1185
Fsp4HI GCNGC 3 cut(s) 400, 482, 660
FspBI CTAG 4 cut(s) 47, 377, 1185, 1331
GluI GCNGC 3 cut(s) 400, 482, 660
GsaI CCCAGC 2 cut(s) 230, 1032
HaeIII GGCC 2 cut(s) 37, 411
HapII CCGG 2 cut(s) 671, 1229
Hin1II CATG 9 cut(s) 206, 364, 388, 627, 639, 723, 778, 1150, 1341
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HinfI GANTC 2 cut(s) 368, 1151
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 2 cut(s) 671, 1229
HphI GGTGA 3 cut(s) 265, 841, 1052
Hpy166II GTNNAC 4 cut(s) 208, 394, 1064, 1075
Hpy188I TCNGA 5 cut(s) 85, 316, 473, 620, 949
Hpy188III TCNNGA 2 cut(s) 416, 821
Hpy8I GTNNAC 4 cut(s) 208, 394, 1064, 1075
Hpy99I CGWCG 1 cut(s) 796
HpyAV CCTTC 4 cut(s) 262, 422, 1093, 1135
HpyCH4III ACNGT 4 cut(s) 124, 577, 1013, 1235
HpyCH4IV ACGT 3 cut(s) 770, 957, 1071
HpyCH4V TGCA 7 cut(s) 481, 503, 639, 744, 774, 837, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 408, 741
HpyF3I CTNAG 1 cut(s) 1095
HpySE526I ACGT 3 cut(s) 770, 957, 1071
Hsp92II CATG 9 cut(s) 206, 364, 388, 627, 639, 723, 778, 1150, 1341
Ksp22I TGATCA 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 1075
Kzo9I GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
Lsp1109I GCAGC 3 cut(s) 386, 493, 646
LweI GCATC 5 cut(s) 24, 409, 731, 979, 1209
MabI ACCWGGT 2 cut(s) 214, 529
MaeI CTAG 4 cut(s) 47, 377, 1185, 1331
MaeII ACGT 3 cut(s) 770, 957, 1071
MaeIII GTNAC 1 cut(s) 172
MalI GATC 7 cut(s) 96, 105, 357, 570, 819, 843, 894
MboI GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
MboII GAAGA 6 cut(s) 363, 444, 612, 934, 1000, 1150
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 244, 854
MluCI AATT 7 cut(s) 25, 184, 462, 475, 487, 915, 1267
MlyI GAGTC 1 cut(s) 1145
MmeI TCCRAC 2 cut(s) 200, 451
MnlI CCTC 7 cut(s) 31, 244, 448, 516, 1031, 1061, 1291
MseI TTAA 3 cut(s) 309, 465, 1074
MslI CAYNNNNRTG 3 cut(s) 330, 389, 1127
MspI CCGG 2 cut(s) 671, 1229
MspR9I CCNGG 4 cut(s) 216, 424, 531, 975
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 4 cut(s) 216, 424, 531, 975
MwoI GCNNNNNNNGC 2 cut(s) 408, 741
NcoI CCATGG 1 cut(s) 1337
NdeI CATATG 1 cut(s) 846
NdeII GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
NlaIII CATG 9 cut(s) 206, 364, 388, 627, 639, 723, 778, 1150, 1341
NlaIV GGNNCC 3 cut(s) 105, 274, 528
NspI RCATGY 2 cut(s) 388, 639
OliI CACNNNNGTG 1 cut(s) 330
PciI ACATGT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 536
PinAI ACCGGT 1 cut(s) 670
PkrI GCNGC 3 cut(s) 401, 483, 661
PleI GAGTC 1 cut(s) 1145
PpsI GAGTC 1 cut(s) 1145
PscI ACATGT 1 cut(s) 384
Psp6I CCWGG 4 cut(s) 214, 422, 529, 973
PspFI CCCAGC 2 cut(s) 226, 1028
PspGI CCWGG 4 cut(s) 214, 422, 529, 973
PspN4I GGNNCC 3 cut(s) 105, 274, 528
PspPI GGNCC 2 cut(s) 551, 1102
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 2 cut(s) 960, 1015
RsaNI GTAC 2 cut(s) 959, 1014
RseI CAYNNNNRTG 3 cut(s) 330, 389, 1127
SaqAI TTAA 3 cut(s) 309, 465, 1074
SatI GCNGC 3 cut(s) 400, 482, 660
Sau3AI GATC 7 cut(s) 94, 103, 355, 568, 817, 841, 892
Sau96I GGNCC 2 cut(s) 551, 1102
SchI GAGTC 1 cut(s) 1145
ScrFI CCNGG 4 cut(s) 216, 424, 531, 975
SduI GDGCHC 2 cut(s) 244, 854
SexAI ACCWGGT 2 cut(s) 214, 529
SfaNI GCATC 5 cut(s) 24, 409, 731, 979, 1209
SfcI CTRYAG 2 cut(s) 573, 762
SinI GGWCC 2 cut(s) 551, 1102
SmiMI CAYNNNNRTG 3 cut(s) 330, 389, 1127
SpeI ACTAGT 2 cut(s) 46, 1330
Sse9I AATT 7 cut(s) 25, 184, 462, 475, 487, 915, 1267
SsiI CCGC 1 cut(s) 549
SspMI CTAG 4 cut(s) 47, 377, 1185, 1331
StyD4I CCNGG 4 cut(s) 214, 422, 529, 973
StyI CCWWGG 3 cut(s) 99, 1184, 1337
TaaI ACNGT 4 cut(s) 124, 577, 1013, 1235
TaiI ACGT 3 cut(s) 773, 960, 1074
TaqI TCGA 4 cut(s) 132, 567, 794, 859
TasI AATT 7 cut(s) 25, 184, 462, 475, 487, 915, 1267
TatI WGTACW 1 cut(s) 1013
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 3 cut(s) 309, 465, 1074
Tru9I TTAA 3 cut(s) 309, 465, 1074
TscAI CASTG 2 cut(s) 396, 844
TseI GCWGC 3 cut(s) 399, 481, 659
TspDTI ATGAA 2 cut(s) 281, 854
TspRI CASTG 2 cut(s) 396, 844
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 551, 1102
XapI RAATTY 2 cut(s) 475, 487
XceI RCATGY 2 cut(s) 388, 639
XmaJI CCTAGG 1 cut(s) 1184
XmiI GTMKAC 2 cut(s) 207, 1063
XspI CTAG 4 cut(s) 47, 377, 1185, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.