Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014650

Physical Location & Seq

Genomic Coordinates Reverse (-)

3653766 .. 3656702

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG030100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCATTCATCAGCATCCCCTCTACTAATTTGTGGCCTTTCGCACTAGTGTTGATAATAGAAGTTGCTATAAGCAGTTTATCAGATTGCTATGATCCCTTGGATCCAAATGGAAATATAACAGTTATTTTCGACACTTACCAATGGGAAAATGATGGCTATTTGGCAAAAGTAACTATCCAGAATTACTACCAATATCGTCATGTAGACAAGCCTGGTTGGGAGCTGGGATGGATATGGGCACAGAATGAGGTGATTTGGTCAATGAAGGGTGCCTTTGCTACCAAACAAGGAAACTGCTCATCCTTCAAGTCAGATATACCACACTCCTGTGTGACACATCCCGAAATAGTTGATCTCATGCCAGATTCTTCCCTAGAAAACATGTCAGTGGACTGCTGCCGTGGTGGCGTTCTTGATGCCTGGGCTATCAACCCCTCCAAGTCATTCTCTTCCTTTCAAATTAAAGTCGGCAATTTGCAGCAAAATTCTTTTGGAACTGCACCTCTCAACCTTACTTTGATGGCACCAGGTCTTGGATACACTTGCGGACCGCTTTTGGATGTCGATCCTACAGTTTCTTTGGATATTGGGGGTAGAAGACAAGTTCAAGTTTTCAGAACATGGAAAGCAACATGCACTTATTCAAGTTTTATAGCTGCTGAAACACCGGTCTGTTGTGTTTCACTCTCTACATTCTACAATCCTACCATCACATCATGCCCCTTGTGTAGCTGTGGATGCAGATTAGCAGATAAAACTACAGAGACATGCATAAGAACCAGTTTCCCGTCGATAATAACAAATGATATTCAAAGTGATCCTGATGTGGTGAAATGCACTGATCATATGTGCCCTGTTCGAGTTCATTGGCATATTATGAGCAACTATGTGGATCATTGGAGAGTAAAACTTACAATTACCAACTATAACTATAATAAAATCTTCTCGGACTGGAACGTACTGGTTCAGCATCCGGGTTTCAGCCAGAAGACAACAATATATAGTTTCAACAGTACAATGCTACCTGCTGGGTTTAGAGATGAAGTTGCCCTCTTTTGGGGTATACCCTACGTTAACACCGAGCTGATTTCCACCAAGAAGGACCAAGTGGGTTCAGTCTCAACTGAAATGCTTTTGAAGAAGGACATGGACTCCTTCACATTCTCAAATGGATGGGCTTTCCCTAGGAGACTATATTTCAATGGAGAGAGTTGTCAGATGCCCCTACCAGACAGTTTCCCAACTTTACCAAATGGTGCTGTCTCCAATTTTGCAAAACCCTCACATTGTCTTTTCCTGCTTTTGACATTTTTGATTTCTCAGGCACTACTAGTTCCATGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

449

Amino Acids

50.29

Weight (kDa)

5.58

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	54 - 216	4.3e-56	COBRA-like protein
COB_C	PF25079	226 - 415	2.9e-43	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02160
malus_domestica	MD05G1114600.v1.1
prunus_persica	Prupe.8G159300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245661
rosa_laevigata	RLG00000015295
rosa_multiflora	Rmu_sc0008277.1_g000013 Rmu_sc0040933.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215140
rosa_rugosa	Rorug05G0515400 Rorug05G0515500 Rorug05G0515600 Rorug05G0515700
rosa_samantha	Rh6AG030100 Rh6BG027500 Rh6CG026800 Rh6DG026200
rosa_wichuraiana	Rw6G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1036
AccB1I	GGYRCC	2 cut(s)	272, 526
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccI	GTMKAC	2 cut(s)	207, 1066
AciI	CCGC	2 cut(s)	549, 554
AclWI	GGATC	6 cut(s)	89, 98, 111, 563, 815, 903
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	2 cut(s)	963, 1018
AfiI	CCNNNNNNNGG	3 cut(s)	536, 1059, 1060
AflIII	ACRYGT	1 cut(s)	384
AgeI	ACCGGT	1 cut(s)	670
AgsI	TTSAA	8 cut(s)	310, 461, 611, 648, 815, 1012, 1141, 1204
AhlI	ACTAGT	2 cut(s)	46, 1333
AjnI	CCWGG	3 cut(s)	214, 422, 529
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	4 cut(s)	226, 659, 735, 1087
AluI	AGCT	4 cut(s)	226, 659, 735, 1087
Alw26I	GTCTC	4 cut(s)	761, 1126, 1186, 1270
AlwI	GGATC	6 cut(s)	89, 98, 111, 563, 815, 903
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	399, 481, 659
ApoI	RAATTY	1 cut(s)	487
AsiGI	ACCGGT	1 cut(s)	670
AspA2I	CCTAGG	1 cut(s)	1187
AspS9I	GGNCC	2 cut(s)	551, 1105
AsuC2I	CCSGG	1 cut(s)	978
AsuHPI	GGTGA	2 cut(s)	265, 844
AvaII	GGWCC	2 cut(s)	551, 1105
AvrII	CCTAGG	1 cut(s)	1187
BaeGI	GKGCMC	2 cut(s)	244, 857
BamHI	GGATCC	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	272, 526
BbsI	GAAGAC	2 cut(s)	607, 998
BbvI	GCAGC	3 cut(s)	386, 493, 646
BccI	CCATC	5 cut(s)	149, 225, 517, 719, 1170
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	3 cut(s)	216, 424, 531
BciVI	GTATCC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	978
BcoDI	GTCTC	4 cut(s)	761, 1126, 1186, 1270
BcuI	ACTAGT	2 cut(s)	46, 1333
BfaI	CTAG	4 cut(s)	47, 377, 1188, 1334
BfmI	CTRYAG	2 cut(s)	573, 762
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	400, 482, 660
BlnI	CCTAGG	1 cut(s)	1187
BlsI	GCNGC	3 cut(s)	401, 483, 661
Bme1390I	CCNGG	4 cut(s)	216, 424, 531, 978
Bme18I	GGWCC	2 cut(s)	551, 1105
BmgT120I	GGNCC	2 cut(s)	551, 1105
BmiI	GGNNCC	3 cut(s)	105, 274, 528
BmrFI	CCNGG	4 cut(s)	216, 424, 531, 978
BmsI	GCATC	5 cut(s)	24, 409, 731, 982, 1212
BpiI	GAAGAC	2 cut(s)	607, 998
BpuMI	CCSGG	1 cut(s)	978
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	99, 403, 423, 1187
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	1139, 1169
Bsc4I	CCNNNNNNNGG	3 cut(s)	536, 1059, 1060
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	783, 959, 969
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	3 cut(s)	216, 424, 531
BseDI	CCNNGG	4 cut(s)	99, 403, 423, 1187
BseGI	GGATG	8 cut(s)	15, 236, 302, 340, 568, 746, 973, 1181
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	3 cut(s)	536, 1059, 1060
BseMII	CTCAG	1 cut(s)	1337
BseNI	ACTGG	3 cut(s)	783, 959, 969
BseSI	GKGCMC	2 cut(s)	244, 857
BseXI	GCAGC	3 cut(s)	386, 493, 646
BseYI	CCCAGC	2 cut(s)	226, 1031
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	2 cut(s)	272, 526
BshTI	ACCGGT	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	671, 977
BslI	CCNNNNNNNGG	3 cut(s)	536, 1059, 1060
BsmAI	GTCTC	4 cut(s)	761, 1126, 1186, 1270
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	244, 857
Bsp143I	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
BspACI	CCGC	2 cut(s)	549, 554
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	1336
BspLI	GGNNCC	3 cut(s)	105, 274, 528
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	6 cut(s)	89, 98, 111, 563, 815, 903
BspT107I	GGYRCC	2 cut(s)	272, 526
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	3 cut(s)	783, 959, 969
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	4 cut(s)	99, 403, 423, 1187
BssMI	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
BssNAI	GTATAC	1 cut(s)	1067
BssT1I	CCWWGG	2 cut(s)	99, 1187
Bst1107I	GTATAC	1 cut(s)	1067
Bst2UI	CCWGG	3 cut(s)	216, 424, 531
Bst4CI	ACNGT	4 cut(s)	124, 577, 1016, 1238
Bst6I	CTCTTC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	1323
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	8 cut(s)	15, 236, 302, 340, 568, 746, 973, 1181
BstKTI	GATC	7 cut(s)	97, 106, 358, 571, 823, 847, 898
BstMAI	GTCTC	4 cut(s)	761, 1126, 1186, 1270
BstMBI	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 741
BstNI	CCWGG	3 cut(s)	216, 424, 531
BstNSI	RCATGY	3 cut(s)	388, 639, 774
BstSCI	CCNGG	4 cut(s)	214, 422, 529, 976
BstSFI	CTRYAG	2 cut(s)	573, 762
BstSLI	GKGCMC	2 cut(s)	244, 857
BstV1I	GCAGC	3 cut(s)	386, 493, 646
BstV2I	GAAGAC	2 cut(s)	607, 998
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	1067
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	8 cut(s)	15, 236, 302, 340, 568, 746, 973, 1181
BtsIMutI	CAGTG	2 cut(s)	396, 840
BveI	ACCTGC	1 cut(s)	1036
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	551, 1105
CpoI	CGGWCCG	1 cut(s)	551
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	962, 1017
CspAI	ACCGGT	1 cut(s)	670
CspI	CGGWCCG	1 cut(s)	551
CviAII	CATG	9 cut(s)	203, 361, 385, 624, 636, 720, 771, 1150, 1341
CviQI	GTAC	2 cut(s)	962, 1017
DdeI	CTNAG	1 cut(s)	1323
DpnI	GATC	7 cut(s)	96, 105, 357, 570, 822, 846, 897
DpnII	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco130I	CCWWGG	2 cut(s)	99, 1187
Eco47I	GGWCC	2 cut(s)	551, 1105
EcoRII	CCWGG	3 cut(s)	214, 422, 529
EcoT14I	CCWWGG	2 cut(s)	99, 1187
EcoT22I	ATGCAT	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	99, 1187
FaeI	CATG	9 cut(s)	206, 364, 388, 627, 639, 723, 774, 1153, 1344
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	9 cut(s)	202, 360, 384, 623, 635, 719, 770, 1149, 1340
FauNDI	CATATG	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	2 cut(s)	207, 1066
Fnu4HI	GCNGC	3 cut(s)	400, 482, 660
FokI	GGATG	8 cut(s)	2, 243, 289, 327, 575, 753, 960, 1188
Fsp4HI	GCNGC	3 cut(s)	400, 482, 660
FspBI	CTAG	4 cut(s)	47, 377, 1188, 1334
GluI	GCNGC	3 cut(s)	400, 482, 660
GsaI	CCCAGC	2 cut(s)	230, 1035
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	671, 977
Hin1II	CATG	9 cut(s)	206, 364, 388, 627, 639, 723, 774, 1153, 1344
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HinfI	GANTC	2 cut(s)	368, 1154
HpaI	GTTAAC	1 cut(s)	1078
HpaII	CCGG	2 cut(s)	671, 977
HphI	GGTGA	2 cut(s)	265, 844
Hpy166II	GTNNAC	4 cut(s)	208, 394, 1067, 1078
Hpy188I	TCNGA	5 cut(s)	85, 316, 620, 952, 1221
Hpy188III	TCNNGA	4 cut(s)	181, 344, 416, 824
Hpy8I	GTNNAC	4 cut(s)	208, 394, 1067, 1078
Hpy99I	CGWCG	1 cut(s)	796
HpyAV	CCTTC	5 cut(s)	262, 316, 1096, 1138, 1168
HpyCH4III	ACNGT	4 cut(s)	124, 577, 1016, 1238
HpyCH4IV	ACGT	2 cut(s)	960, 1074
HpyCH4V	TGCA	7 cut(s)	481, 503, 639, 744, 774, 840, 1277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 741
HpyF3I	CTNAG	1 cut(s)	1323
HpySE526I	ACGT	2 cut(s)	960, 1074
Hsp92II	CATG	9 cut(s)	206, 364, 388, 627, 639, 723, 774, 1153, 1344
Ksp22I	TGATCA	1 cut(s)	844
KspAI	GTTAAC	1 cut(s)	1078
Kzo9I	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	3 cut(s)	386, 493, 646
LweI	GCATC	5 cut(s)	24, 409, 731, 982, 1212
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	4 cut(s)	47, 377, 1188, 1334
MaeII	ACGT	2 cut(s)	960, 1074
MaeIII	GTNAC	2 cut(s)	172, 334
MalI	GATC	7 cut(s)	96, 105, 357, 570, 822, 846, 897
MboI	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
MboII	GAAGA	6 cut(s)	363, 444, 612, 937, 1003, 1153
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	244, 857
MluCI	AATT	7 cut(s)	28, 184, 462, 475, 487, 918, 1270
MlyI	GAGTC	1 cut(s)	1148
MnlI	CCTC	6 cut(s)	31, 244, 448, 516, 1064, 1294
Mph1103I	ATGCAT	1 cut(s)	776
MseI	TTAA	2 cut(s)	465, 1077
MslI	CAYNNNNRTG	2 cut(s)	330, 389
MspI	CCGG	2 cut(s)	671, 977
MspR9I	CCNGG	4 cut(s)	216, 424, 531, 978
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	3 cut(s)	216, 424, 531
MwoI	GCNNNNNNNGC	2 cut(s)	408, 741
NciI	CCSGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	849
NdeII	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
NlaIII	CATG	9 cut(s)	206, 364, 388, 627, 639, 723, 774, 1153, 1344
NlaIV	GGNNCC	3 cut(s)	105, 274, 528
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	776
NspI	RCATGY	3 cut(s)	388, 639, 774
OliI	CACNNNNGTG	1 cut(s)	330
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	1080
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	670
PkrI	GCNGC	3 cut(s)	401, 483, 661
PleI	GAGTC	1 cut(s)	1148
PpsI	GAGTC	1 cut(s)	1148
PscI	ACATGT	1 cut(s)	384
Psp6I	CCWGG	3 cut(s)	214, 422, 529
PspFI	CCCAGC	2 cut(s)	226, 1031
PspGI	CCWGG	3 cut(s)	214, 422, 529
PspN4I	GGNNCC	3 cut(s)	105, 274, 528
PspPI	GGNCC	2 cut(s)	551, 1105
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	963, 1018
RsaNI	GTAC	2 cut(s)	962, 1017
RseI	CAYNNNNRTG	2 cut(s)	330, 389
Rsr2I	CGGWCCG	1 cut(s)	551
RsrII	CGGWCCG	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	465, 1077
SatI	GCNGC	3 cut(s)	400, 482, 660
Sau3AI	GATC	7 cut(s)	94, 103, 355, 568, 820, 844, 895
Sau96I	GGNCC	2 cut(s)	551, 1105
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	4 cut(s)	216, 424, 531, 978
SduI	GDGCHC	2 cut(s)	244, 857
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	5 cut(s)	24, 409, 731, 982, 1212
SfcI	CTRYAG	2 cut(s)	573, 762
SinI	GGWCC	2 cut(s)	551, 1105
SmiMI	CAYNNNNRTG	2 cut(s)	330, 389
SpeI	ACTAGT	2 cut(s)	46, 1333
Sse9I	AATT	7 cut(s)	28, 184, 462, 475, 487, 918, 1270
SsiI	CCGC	2 cut(s)	549, 554
SspMI	CTAG	4 cut(s)	47, 377, 1188, 1334
StyD4I	CCNGG	4 cut(s)	214, 422, 529, 976
StyI	CCWWGG	2 cut(s)	99, 1187
TaaI	ACNGT	4 cut(s)	124, 577, 1016, 1238
TaiI	ACGT	2 cut(s)	963, 1077
TaqI	TCGA	4 cut(s)	132, 567, 794, 862
TasI	AATT	7 cut(s)	28, 184, 462, 475, 487, 918, 1270
TatI	WGTACW	1 cut(s)	1016
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	465, 1077
Tru9I	TTAA	2 cut(s)	465, 1077
TscAI	CASTG	2 cut(s)	396, 847
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	399, 481, 659
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	281, 857, 1059
TspRI	CASTG	2 cut(s)	396, 847
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	551, 1105
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	3 cut(s)	388, 639, 774
XmaJI	CCTAGG	1 cut(s)	1187
XmiI	GTMKAC	2 cut(s)	207, 1066
XspI	CTAG	4 cut(s)	47, 377, 1188, 1334
Zsp2I	ATGCAT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.