Rorug05G0515500

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014650
Physical Location & Seq
Reverse (-)
70025056 .. 70027444
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0515500.1

Sequence Viewer

Length: 789 bp
ATGCCTTTGACTATAAGCCCTTCTTCAACATCCATAATCTCCCAAAGACCAAACCTCAGTTTCTTCAAAAACACTGGGCCAGCTTTCATCAAACTCCCAAAGAGCAACAACAATGGCAACGTGGGTAGTGGTGGTTTGGTAATATTCGCCTCAAATGGGGCTAATAATCGACAAGCACTGGAGGTGGTGTTCGAGCCCTTTGAGGAGGTCAAGAAGGAGCTGCTCCTCGTCCCAACTGAGCCTAATGCTTCTCTTGCTCGCCAGAAATACACAGACGAAAGTGTAGCTGCCATTAATGAACAAATCAATGTGGAATACAATGTCTCCTATGTGTACCATGCCATGTATGCCTACTTTGACAGAGACAATGTTGCTCTCAAGGGATTTGCCAAATTTTTCAAAGAATCAAGTGCGGAAGAAAGGGGGCATGCTGAAAAACTGATGGAATATCAGAACAAACGTGGAGGAAGAGTTAAGCTACAGTCCATGCTAATGCCCTGCTCAGAGTTTGATCATACTGAAAAGGGTGATGCGTTGCACTCAATGGAGCTTGCGCTTGCTTTGGAAAAGCTGAACAATGAGAAACTTCTAAATCTGCACAAAATAGCTAATGAAAACAATGATGTGCATTTAGTGGATTATATTGAAAGTGAATACTTGAATGAACAGGTCGAATCTATAAGGAAAATCTCTGAATATGTAGCTCAGTTGAGAAGGATTGGTCCAGGACATGGTGTTTGGCACTTTGATCAGATGCTCCTTAATGACACAGCCGGGGTCGCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

262

Amino Acids

29.43

Weight (kDa)

5.67

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 96 - 240 2.2e-33 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AciI CCGC 2 cut(s) 413, 783
AcsI RAATTY 1 cut(s) 392
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 156, 731
AgsI TTSAA 5 cut(s) 27, 67, 400, 647, 661
AjnI CCWGG 1 cut(s) 724
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 8 cut(s) 83, 220, 287, 478, 550, 571, 608, 704
AluI AGCT 8 cut(s) 83, 220, 287, 478, 550, 571, 608, 704
Alw26I GTCTC 2 cut(s) 328, 357
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 220, 287
ApoI RAATTY 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 720, 752
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 2 cut(s) 77, 722
AsuC2I CCSGG 1 cut(s) 775
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 722
BanII GRGCYC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 207, 274
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 726
BclI TGATCA 2 cut(s) 511, 748
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 2 cut(s) 328, 357
BfmI CTRYAG 1 cut(s) 479
BisI GCNGC 3 cut(s) 221, 288, 783
BlsI GCNGC 3 cut(s) 222, 289, 784
Bme1390I CCNGG 2 cut(s) 726, 775
Bme18I GGWCC 1 cut(s) 722
BmgT120I GGNCC 2 cut(s) 77, 722
BmrFI CCNGG 2 cut(s) 726, 775
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 520, 744
BmuI ACTGGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 775
BsaJI CCNNGG 1 cut(s) 774
BsaXI ACNNNNNCTCC 6 cut(s) 173, 203, 308, 338, 456, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 731
Bse1I ACTGG 2 cut(s) 79, 183
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 156, 731
BseMII CTCAG 4 cut(s) 70, 228, 516, 719
BseNI ACTGG 2 cut(s) 79, 183
BseRI GAGGAG 2 cut(s) 215, 218
BseXI GCAGC 2 cut(s) 207, 274
BsgI GTGCAG 1 cut(s) 581
BshFI GGCC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 774
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 156, 731
BsmAI GTCTC 2 cut(s) 328, 357
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 511, 748
BspACI CCGC 2 cut(s) 413, 783
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 4 cut(s) 69, 229, 515, 718
BsrI ACTGG 2 cut(s) 79, 183
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 2 cut(s) 511, 748
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 483
Bst6I CTCTTC 1 cut(s) 463
BstC8I GCNNGC 5 cut(s) 81, 259, 429, 552, 558
BstDEI CTNAG 4 cut(s) 56, 237, 502, 705
BstF5I GGATG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 2 cut(s) 514, 751
BstMAI GTCTC 2 cut(s) 328, 357
BstMBI GATC 2 cut(s) 511, 748
BstMWI GCNNNNNNNGC 3 cut(s) 254, 347, 779
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 724, 773
BstSFI CTRYAG 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 207, 274
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 72, 176
Cac8I GCNNGC 5 cut(s) 81, 259, 429, 552, 558
CfoI GCGC 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 77, 722
Csp6I GTAC 1 cut(s) 334
CviAII CATG 6 cut(s) 338, 343, 428, 487, 731, 786
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 4 cut(s) 56, 237, 502, 705
DpnI GATC 2 cut(s) 513, 750
DpnII GATC 2 cut(s) 511, 748
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 6 cut(s) 341, 346, 431, 490, 734, 789
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FaqI GGGAC 1 cut(s) 215
FatI CATG 6 cut(s) 337, 342, 427, 486, 730, 785
FbaI TGATCA 2 cut(s) 511, 748
Fnu4HI GCNGC 3 cut(s) 221, 288, 783
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 221, 288, 783
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 221, 288, 783
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 774
HhaI GCGC 1 cut(s) 556
Hin1II CATG 6 cut(s) 341, 346, 431, 490, 734, 789
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 2 cut(s) 404, 674
HpaII CCGG 1 cut(s) 774
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 453, 505, 694, 753
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 3 cut(s) 30, 208, 708
HpyCH4III ACNGT 1 cut(s) 483
HpyCH4IV ACGT 2 cut(s) 120, 460
HpyCH4V TGCA 3 cut(s) 538, 598, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 347, 779
HpyF3I CTNAG 4 cut(s) 56, 237, 502, 705
HpySE526I ACGT 2 cut(s) 120, 460
Hsp92II CATG 6 cut(s) 341, 346, 431, 490, 734, 789
HspAI GCGC 1 cut(s) 554
Ksp22I TGATCA 2 cut(s) 511, 748
Kzo9I GATC 2 cut(s) 511, 748
LmnI GCTCC 4 cut(s) 217, 228, 547, 762
LpnPI CCDG 8 cut(s) 60, 93, 164, 275, 511, 653, 711, 738
Lsp1109I GCAGC 2 cut(s) 207, 274
LweI GCATC 2 cut(s) 520, 744
MaeII ACGT 2 cut(s) 120, 460
MalI GATC 2 cut(s) 513, 750
MboI GATC 2 cut(s) 511, 748
MboII GAAGA 4 cut(s) 15, 55, 428, 480
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 392
MnlI CCTC 7 cut(s) 65, 160, 175, 196, 199, 236, 458
MseI TTAA 3 cut(s) 294, 474, 762
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 2 cut(s) 726, 775
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 3 cut(s) 254, 347, 779
NciI CCSGG 1 cut(s) 775
NdeII GATC 2 cut(s) 511, 748
NlaIII CATG 6 cut(s) 341, 346, 431, 490, 734, 789
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 404, 674
PflMI CCANNNNNTGG 1 cut(s) 731
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 3 cut(s) 222, 289, 784
PshBI ATTAAT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspPI GGNCC 2 cut(s) 77, 722
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 3 cut(s) 294, 474, 762
SatI GCNGC 3 cut(s) 221, 288, 783
Sau3AI GATC 2 cut(s) 511, 748
Sau96I GGNCC 2 cut(s) 77, 722
ScrFI CCNGG 2 cut(s) 726, 775
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 520, 744
SfcI CTRYAG 1 cut(s) 479
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SphI GCATGC 1 cut(s) 431
Sse9I AATT 1 cut(s) 392
SsiI CCGC 2 cut(s) 413, 783
SspI AATATT 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 724, 773
TaaI ACNGT 1 cut(s) 483
TaiI ACGT 2 cut(s) 123, 463
TaqI TCGA 3 cut(s) 169, 192, 672
TasI AATT 1 cut(s) 392
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 2 cut(s) 404, 674
Tru1I TTAA 3 cut(s) 294, 474, 762
Tru9I TTAA 3 cut(s) 294, 474, 762
TscAI CASTG 2 cut(s) 79, 183
TseI GCWGC 2 cut(s) 220, 287
TspDTI ATGAA 4 cut(s) 76, 312, 627, 678
TspRI CASTG 2 cut(s) 79, 183
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 722
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.