Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014650

Physical Location & Seq

Genomic Coordinates Forward (+)

23369718 .. 23372686

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1114600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTCTCTCATCCATTCTTGCTTGTGGCCTTCTGCCCTAGTGTCCATGTTGTTAATTGCTATGTGCAGTTTATCAGGCATGAATACGAGCCATTATATTGATCATAAGTCTATGTGCTGCTTCTTGATTCCGTTTTTGGATTGCTATGACCCCTTGGATCCAAATGGAAACTTTACGGTTACCTTCGACACATATGATTGGGCAGATGATGGCTATTTGGCAAAAGTAACCATCCAAAATTTCTACCAGTATCGTCATGTGGACAAACCTGGTTGGCAGCTTGGATGGGTTTGGCAACAGAATGAGGTGATTTGGTCAATAACTGGTGCGTTTGCTAACGATCAAGGAAATTGCTCTGCGTACCAGACTGATATACCACACTCCTGCAAGAAAAATCCCGAAATAGTTGACCTCACGCCAGATGCCTTGTTGGACAACAAATCGGAGGACTGCTGCCGGGGTGGTGTACTTGATGCTTTGGCTATCAACCCTTCCAAGTCATTATCTTCGTTTGGAATTAAAGTCGGAAATTTGGGAGGATACCCTTTTAATGGAAGTCCACCTCTCAATCTTACTTTGAAGGCACCAGGTCTTGGTTACACCTGTGGGCCTCTTTTGAATGTTGACCCAACAGTTTCTACGGATTTTGGGGGTAGACGCCAACGTCCAGTTTTCAGAACTTGGAAAGCAACATGCACTTATTCCAGTTTTTTAGCTAGTGATTCTCCAGTCTGTTGTGTTTCACTCTCTTCATTTTATAATTCTGAGATCACATCATGCCCCAAATGTAGCTGTGGATGCAGACCAGTAACAGACAAAAAGATGGATACATGCATTAGGTGCACTGTTAATTATTTTTACTGCATCATAACACTGAGAGATCCGAATTTTCAAGTTAATTTGAATTCCACTAATCCTTCGTTTCTGTATCTCTTTCCTCTTTATGATAACAGGCAAGCCTACCCTTTAGGAACGTCAGTAGAATATGATGGCGATGGTCTTGACACAGTGAAATGCACTGATCATATGTGCCCGATTCGTGTTCACTGGCATGTTAAGACTAACTACTTGACTCACTGGAGAGTTAAACTTACAATTACTAATTACAACTATATGAAAAACTTCTCAAATTGGAATGTACTGGTCCAGCACCCTGGTCTCAGTAAGGAAGCAAGAACATACAGTTTCAACAGTACAATTCTTCCTACTAGGTTTAGAGATGCAGCTGCCCTGTACTGGGGCATACCCTACGTCAATGAAGAGCTGATTGCAACAACTGAGGATGGAGTGGGTTCAGTCTCAACAGAGATGCTTCTGGAAAAGGACTCAAACTCCTTCACATTAAAAAATGGATGGGGTTTCCCAAGAAGACTATATTTCAACGGAGAAATCTGTGAGATGCCCTTACCAGACACTTACCCAATGTTGCCAAATGGCAGCTCCAAACCCAAACCATCACATTTCCTCTTCCTTCTTTTGATATTTTTCATCTCCCAAACCCTAATTTTTACATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

507

Amino Acids

57.07

Weight (kDa)

6.12

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	72 - 235	3.7e-54	COBRA-like protein
COB_C	PF25079	245 - 474	5e-39	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02160
malus_domestica	MD05G1114600.v1.1
prunus_persica	Prupe.8G159300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245661
rosa_laevigata	RLG00000015295
rosa_multiflora	Rmu_sc0008277.1_g000013 Rmu_sc0040933.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215140
rosa_rugosa	Rorug05G0515400 Rorug05G0515500 Rorug05G0515600 Rorug05G0515700
rosa_samantha	Rh6AG030100 Rh6BG027500 Rh6CG026800 Rh6DG026200
rosa_wichuraiana	Rw6G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AasI	GACNNNNNNGTC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	583
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	655
AclWI	GGATC	3 cut(s)	152, 165, 875
AcsI	RAATTY	4 cut(s)	238, 529, 886, 904
AcyI	GRCGYC	1 cut(s)	658
AfaI	GTAC	5 cut(s)	362, 468, 1140, 1195, 1235
AfiI	CCNNNNNNNGG	4 cut(s)	551, 593, 1236, 1237
AgsI	TTSAA	6 cut(s)	580, 619, 893, 904, 1189, 1381
AjnI	CCWGG	3 cut(s)	268, 586, 1153
AluBI	AGCT	6 cut(s)	280, 716, 792, 1226, 1264, 1440
AluI	AGCT	6 cut(s)	280, 716, 792, 1226, 1264, 1440
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	3 cut(s)	9, 1163, 1303
Alw44I	GTGCAC	1 cut(s)	841
AlwI	GGATC	3 cut(s)	152, 165, 875
AoxI	GGCC	2 cut(s)	26, 608
ApaLI	GTGCAC	1 cut(s)	841
ApeKI	GCWGC	6 cut(s)	117, 277, 453, 1223, 1226, 1437
ApoI	RAATTY	4 cut(s)	238, 529, 886, 904
Asp700I	GAANNNNTTC	1 cut(s)	1121
AspS9I	GGNCC	2 cut(s)	608, 1144
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	1144
BaeGI	GKGCMC	2 cut(s)	845, 1034
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	1375
Bbv12I	GWGCWC	1 cut(s)	845
BbvI	GCAGC	6 cut(s)	104, 289, 440, 1213, 1235, 1449
BccI	CCATC	9 cut(s)	203, 239, 279, 817, 983, 989, 1277, 1347, 1462
BciT130I	CCWGG	3 cut(s)	270, 588, 1155
BciVI	GTATCC	2 cut(s)	533, 820
BclI	TGATCA	2 cut(s)	100, 1021
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	3 cut(s)	9, 1163, 1303
BfaI	CTAG	3 cut(s)	38, 717, 1209
BfuI	GTATCC	2 cut(s)	533, 820
BisI	GCNGC	6 cut(s)	118, 278, 454, 1224, 1227, 1438
BlsI	GCNGC	6 cut(s)	119, 279, 455, 1225, 1228, 1439
Bme1390I	CCNGG	4 cut(s)	270, 458, 588, 1155
Bme18I	GGWCC	1 cut(s)	1144
BmgT120I	GGNCC	2 cut(s)	608, 1144
BmiI	GGNNCC	2 cut(s)	159, 585
BmrFI	CCNGG	4 cut(s)	270, 458, 588, 1155
BmrI	ACTGGG	1 cut(s)	1246
BmsI	GCATC	7 cut(s)	412, 463, 788, 873, 1210, 1299, 1389
BmuI	ACTGGG	1 cut(s)	1246
BpiI	GAAGAC	1 cut(s)	1375
BpmI	CTGGAG	2 cut(s)	711, 1099
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	1163
BsaJI	CCNNGG	3 cut(s)	153, 457, 1153
BsaXI	ACNNNNNCTCC	2 cut(s)	1316, 1346
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 593, 1236, 1237
BseBI	CCWGG	3 cut(s)	270, 588, 1155
BseDI	CCNNGG	3 cut(s)	153, 457, 1153
BseGI	GGATG	6 cut(s)	9, 231, 290, 803, 1288, 1358
BseLI	CCNNNNNNNGG	4 cut(s)	551, 593, 1236, 1237
BseMII	CTCAG	4 cut(s)	756, 866, 1174, 1269
BseSI	GKGCMC	2 cut(s)	845, 1034
BseXI	GCAGC	6 cut(s)	104, 289, 440, 1213, 1235, 1449
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	28, 610
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	845
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	551, 593, 1236, 1237
BsmAI	GTCTC	3 cut(s)	9, 1163, 1303
BsnI	GGCC	2 cut(s)	28, 610
Bso31I	GGTCTC	1 cut(s)	1163
Bsp1286I	GDGCHC	2 cut(s)	845, 1034
Bsp143I	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
BspANI	GGCC	2 cut(s)	28, 610
BspCNI	CTCAG	4 cut(s)	757, 867, 1173, 1270
BspLI	GGNNCC	2 cut(s)	159, 585
BspPI	GGATC	3 cut(s)	152, 165, 875
BspQI	GCTCTTC	1 cut(s)	1254
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	1163
BssECI	CCNNGG	3 cut(s)	153, 457, 1153
BssMI	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
BssNI	GRCGYC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	270, 588, 1155
Bst4CI	ACNGT	6 cut(s)	178, 634, 847, 1009, 1184, 1193
Bst6I	CTCTTC	3 cut(s)	754, 1254, 1472
BstACI	GRCGYC	1 cut(s)	658
BstAPI	GCANNNNNTGC	1 cut(s)	840
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	4 cut(s)	765, 875, 1160, 1278
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	6 cut(s)	9, 231, 290, 803, 1288, 1358
BstKTI	GATC	6 cut(s)	103, 160, 343, 771, 883, 1024
BstMAI	GTCTC	3 cut(s)	9, 1163, 1303
BstMBI	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	798, 840
BstNI	CCWGG	3 cut(s)	270, 588, 1155
BstNSI	RCATGY	3 cut(s)	696, 834, 1055
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	4 cut(s)	268, 456, 586, 1153
BstSLI	GKGCMC	2 cut(s)	845, 1034
BstV1I	GCAGC	6 cut(s)	104, 289, 440, 1213, 1235, 1449
BstV2I	GAAGAC	1 cut(s)	1375
BstX2I	RGATCY	2 cut(s)	157, 880
BstXI	CCANNNNNNTGG	1 cut(s)	1154
BstYI	RGATCY	2 cut(s)	157, 880
BsuI	GTATCC	2 cut(s)	533, 820
BsuRI	GGCC	2 cut(s)	28, 610
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	6 cut(s)	9, 231, 290, 803, 1288, 1358
BtsIMutI	CAGTG	6 cut(s)	843, 872, 1014, 1017, 1045, 1075
Cac8I	GCNNGC	1 cut(s)	957
Cfr13I	GGNCC	2 cut(s)	608, 1144
CseI	GACGC	1 cut(s)	666
CsiI	ACCWGGT	2 cut(s)	268, 586
Csp6I	GTAC	5 cut(s)	361, 467, 1139, 1194, 1234
CviAII	CATG	8 cut(s)	46, 79, 257, 693, 777, 831, 1052, 1512
CviQI	GTAC	5 cut(s)	361, 467, 1139, 1194, 1234
DdeI	CTNAG	4 cut(s)	765, 875, 1160, 1278
DpnI	GATC	6 cut(s)	102, 159, 342, 770, 882, 1023
DpnII	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
DrdI	GACNNNNNNGTC	1 cut(s)	663
DseDI	GACNNNNNNGTC	1 cut(s)	663
Eam1104I	CTCTTC	3 cut(s)	754, 1254, 1472
EarI	CTCTTC	3 cut(s)	754, 1254, 1472
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	1163
Eco47I	GGWCC	1 cut(s)	1144
Eco91I	GGTNACC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	904
EcoRII	CCWGG	3 cut(s)	268, 586, 1153
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	8 cut(s)	49, 82, 260, 696, 780, 834, 1055, 1515
FatI	CATG	8 cut(s)	45, 78, 256, 692, 776, 830, 1051, 1511
FauNDI	CATATG	2 cut(s)	193, 1026
FbaI	TGATCA	2 cut(s)	100, 1021
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	6 cut(s)	118, 278, 454, 1224, 1227, 1438
FokI	GGATG	5 cut(s)	218, 297, 810, 1295, 1365
Fsp4HI	GCNGC	6 cut(s)	118, 278, 454, 1224, 1227, 1438
FspBI	CTAG	3 cut(s)	38, 717, 1209
GluI	GCNGC	6 cut(s)	118, 278, 454, 1224, 1227, 1438
GsuI	CTGGAG	2 cut(s)	711, 1099
HaeIII	GGCC	2 cut(s)	28, 610
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	666
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	8 cut(s)	49, 82, 260, 696, 780, 834, 1055, 1515
HincII	GTYRAC	2 cut(s)	409, 625
HindII	GTYRAC	2 cut(s)	409, 625
HinfI	GANTC	5 cut(s)	127, 722, 1036, 1072, 1325
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	8 cut(s)	262, 409, 467, 560, 625, 656, 843, 1045
Hpy188I	TCNGA	5 cut(s)	445, 527, 677, 766, 885
Hpy188III	TCNNGA	4 cut(s)	124, 398, 1001, 1316
Hpy8I	GTNNAC	8 cut(s)	262, 409, 467, 560, 625, 656, 843, 1045
HpyAV	CCTTC	7 cut(s)	39, 193, 501, 574, 927, 1345, 1481
HpyCH4III	ACNGT	6 cut(s)	178, 634, 847, 1009, 1184, 1193
HpyCH4IV	ACGT	3 cut(s)	664, 974, 1251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	798, 840
HpyF3I	CTNAG	4 cut(s)	765, 875, 1160, 1278
HpySE526I	ACGT	3 cut(s)	664, 974, 1251
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	8 cut(s)	49, 82, 260, 696, 780, 834, 1055, 1515
Ksp22I	TGATCA	2 cut(s)	100, 1021
Kzo9I	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
LguI	GCTCTTC	1 cut(s)	1254
LmnI	GCTCC	1 cut(s)	1445
Lsp1109I	GCAGC	6 cut(s)	104, 289, 440, 1213, 1235, 1449
LweI	GCATC	7 cut(s)	412, 463, 788, 873, 1210, 1299, 1389
MabI	ACCWGGT	2 cut(s)	268, 586
MaeI	CTAG	3 cut(s)	38, 717, 1209
MaeII	ACGT	3 cut(s)	664, 974, 1251
MaeIII	GTNAC	4 cut(s)	178, 226, 596, 808
MalI	GATC	6 cut(s)	102, 159, 342, 770, 882, 1023
MboI	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
MboII	GAAGA	6 cut(s)	498, 741, 1193, 1271, 1380, 1459
MflI	RGATCY	2 cut(s)	157, 880
MhlI	GDGCHC	2 cut(s)	845, 1034
MlyI	GAGTC	2 cut(s)	1066, 1319
MmeI	TCCRAC	2 cut(s)	411, 505
MnlI	CCTC	9 cut(s)	298, 422, 439, 530, 573, 621, 948, 1273, 1475
Mph1103I	ATGCAT	1 cut(s)	836
MroXI	GAANNNNTTC	1 cut(s)	1121
MseI	TTAA	8 cut(s)	53, 519, 549, 849, 897, 1056, 1086, 1343
MslI	CAYNNNNRTG	1 cut(s)	1050
MspA1I	CMGCKG	1 cut(s)	1226
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	4 cut(s)	270, 458, 588, 1155
MvaI	CCWGG	3 cut(s)	270, 588, 1155
MwoI	GCNNNNNNNGC	2 cut(s)	798, 840
NciI	CCSGG	1 cut(s)	458
NdeI	CATATG	2 cut(s)	193, 1026
NdeII	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
NlaIII	CATG	8 cut(s)	49, 82, 260, 696, 780, 834, 1055, 1515
NlaIV	GGNNCC	2 cut(s)	159, 585
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	3 cut(s)	696, 834, 1055
PciSI	GCTCTTC	1 cut(s)	1254
PdmI	GAANNNNTTC	1 cut(s)	1121
PfeI	GAWTC	3 cut(s)	127, 722, 1036
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	6 cut(s)	119, 279, 455, 1225, 1228, 1439
PleI	GAGTC	2 cut(s)	1066, 1319
PpsI	GAGTC	2 cut(s)	1066, 1319
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	3 cut(s)	268, 586, 1153
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	3 cut(s)	268, 586, 1153
PspN4I	GGNNCC	2 cut(s)	159, 585
PspPI	GGNCC	2 cut(s)	608, 1144
PsuI	RGATCY	2 cut(s)	157, 880
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	5 cut(s)	362, 468, 1140, 1195, 1235
RsaNI	GTAC	5 cut(s)	361, 467, 1139, 1194, 1234
RseI	CAYNNNNRTG	1 cut(s)	1050
SapI	GCTCTTC	1 cut(s)	1254
SaqAI	TTAA	8 cut(s)	53, 519, 549, 849, 897, 1056, 1086, 1343
SatI	GCNGC	6 cut(s)	118, 278, 454, 1224, 1227, 1438
Sau3AI	GATC	6 cut(s)	100, 157, 340, 768, 880, 1021
Sau96I	GGNCC	2 cut(s)	608, 1144
SchI	GAGTC	2 cut(s)	1066, 1319
ScrFI	CCNGG	4 cut(s)	270, 458, 588, 1155
SduI	GDGCHC	2 cut(s)	845, 1034
SexAI	ACCWGGT	2 cut(s)	268, 586
SfaNI	GCATC	7 cut(s)	412, 463, 788, 873, 1210, 1299, 1389
SinI	GGWCC	1 cut(s)	1144
SmiMI	CAYNNNNRTG	1 cut(s)	1050
SspMI	CTAG	3 cut(s)	38, 717, 1209
StyD4I	CCNGG	4 cut(s)	268, 456, 586, 1153
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	6 cut(s)	178, 634, 847, 1009, 1184, 1193
TaiI	ACGT	3 cut(s)	667, 977, 1254
TaqI	TCGA	1 cut(s)	186
TatI	WGTACW	4 cut(s)	466, 1138, 1193, 1233
TfiI	GAWTC	3 cut(s)	127, 722, 1036
Tru1I	TTAA	8 cut(s)	53, 519, 549, 849, 897, 1056, 1086, 1343
Tru9I	TTAA	8 cut(s)	53, 519, 549, 849, 897, 1056, 1086, 1343
TscAI	CASTG	6 cut(s)	850, 879, 1014, 1024, 1052, 1082
TseI	GCWGC	6 cut(s)	117, 277, 453, 1223, 1226, 1437
TspDTI	ATGAA	5 cut(s)	95, 741, 1130, 1272, 1477
TspGWI	ACGGA	3 cut(s)	120, 656, 1398
TspRI	CASTG	6 cut(s)	850, 879, 1014, 1024, 1052, 1082
Van91I	CCANNNNNTGG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	1144
XapI	RAATTY	4 cut(s)	238, 529, 886, 904
XceI	RCATGY	3 cut(s)	696, 834, 1055
XmiI	GTMKAC	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	1121
XspI	CTAG	3 cut(s)	38, 717, 1209
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.