Rw6G002580

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014650
Physical Location & Seq
Reverse (-)
4126190 .. 4129134
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002580.1

Sequence Viewer

Length: 1341 bp
ATGGCATTCATCAGCATCCCCTCTAATAATTTGTGGCCTTTCGCACTAGTGTTGATAATAGTAGTTGCTATAAGCAATTGCTATGATCCCTTGGATCCAAATGGAAATATAACAGTTATTTTCGACACTTACCAATGGGAAAATGATGGCTATTTGGCAAAAGTAACTATCCAGAATTACTACCAATATCGTCATGTAGACAAGCCAGGTTGGGAGCTGGGATGGATATGGGCACAGAATGAGGTGATTTGGTCAATGAAGGGTGCCTTTGCTACCAAACAAGGAAACTGCTCATCCTTCAAGTCAGATATACCACACTCCTGTGTGAAACATCCCGAAATAGTTGATCTCATGCCAGATTCTTCCCTAGAAAACATGTCAGTGGACTGCTGCCGTGGTGGCGTTCTTGATGCCTGGGCTATCAACCCCTCCAAGTCATTCTCTTCCTTTCAGATTAAAGTCGGCAATTTGCAGCAAAATTCTTTTGGAACTGCACCTCTCAACCTTACTTTGATGGCACCAGGTCTTGGATACACTTGCGGACCGCTTTTGGATGTCGATCCTACAGTTTCTTTGGATATTGGGGGTAGAAGACAAGTTCAAGTTTTCAGAACATGGAAAGCAACATGCACTTATTCAAGTTTTATAGCTGCTGAAACACCTGTCTGTTGTGTTTCACTCTCTACATTCTACAATCCTACCATCACATCATGCCCCTTGTGTAGCTGTGGATGCAGATTAGCAGATAAAACTACAGAGACATGCATAAGAACCAGTTTCCCGTCGATAATAACAAATGATATTCAAAGTGATCCTGATGTGGTGAAATGCACTGATCATATGTGCCCTGTTCGAGTTCATTGGCATATTATGAGCAACTATGTGGATCACTGGAGAGTAAAACTTACAATTACCAACTATAACTATAATAAAATCTTCTCGGACTGGAACGTACTGGTTCAGCATCCGGGTTTCAGCCAGAAGACAACAATATATAGTTTCAACAGTACAATGCTACCTGCTGGGTTTAGAGATGAAGTTGCCCTCTTTTGGGGTATACCCTACGTTAACACCGAGCTGATTTCCACCAAGAAGGACCAAGTGGGTTCAGTCTCAACTGAAATGCTTTTGAAGAAGGACATGGACTCCTTCACATTCTCAAATGGATGGGCTTTCCCTAGGAGACTATATTTCAATGGAGAGAGTTGTCAGATGCCCCTACCAGACAGTTTCCCAACTTTACCAAATGGTGCTGTCTCCAATTTTGCAAAACCCTCACATTGTCTTTTCCTGCTTTTGACATTTTTGATTTCTCAGGCACTACTAGTTCCATGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

446

Amino Acids

50.01

Weight (kDa)

5.98

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 51 - 213 1.5e-56 COBRA-like protein
COB_C PF25079 223 - 412 2.9e-43 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1027
AccB1I GGYRCC 2 cut(s) 263, 517
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 2 cut(s) 198, 1057
AciI CCGC 2 cut(s) 540, 545
AclWI GGATC 6 cut(s) 80, 89, 102, 554, 806, 894
AcsI RAATTY 1 cut(s) 478
AfaI GTAC 2 cut(s) 954, 1009
AfiI CCNNNNNNNGG 3 cut(s) 527, 1050, 1051
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 7 cut(s) 301, 602, 639, 806, 1003, 1132, 1195
AhlI ACTAGT 2 cut(s) 46, 1324
AjnI CCWGG 3 cut(s) 205, 413, 520
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 4 cut(s) 217, 650, 726, 1078
AluI AGCT 4 cut(s) 217, 650, 726, 1078
Alw26I GTCTC 4 cut(s) 752, 1117, 1177, 1261
AlwI GGATC 6 cut(s) 80, 89, 102, 554, 806, 894
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 390, 472, 650
ApoI RAATTY 1 cut(s) 478
AspA2I CCTAGG 1 cut(s) 1178
AspS9I GGNCC 2 cut(s) 542, 1096
AsuC2I CCSGG 1 cut(s) 969
AsuHPI GGTGA 2 cut(s) 256, 835
AvaII GGWCC 2 cut(s) 542, 1096
AvrII CCTAGG 1 cut(s) 1178
BaeGI GKGCMC 2 cut(s) 235, 848
BamHI GGATCC 1 cut(s) 94
BanI GGYRCC 2 cut(s) 263, 517
BbsI GAAGAC 2 cut(s) 598, 989
BbvI GCAGC 3 cut(s) 377, 484, 637
BccI CCATC 5 cut(s) 140, 216, 508, 710, 1161
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 3 cut(s) 207, 415, 522
BciVI GTATCC 1 cut(s) 524
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 1 cut(s) 969
BcoDI GTCTC 4 cut(s) 752, 1117, 1177, 1261
BcuI ACTAGT 2 cut(s) 46, 1324
BfaI CTAG 4 cut(s) 47, 368, 1179, 1325
BfmI CTRYAG 2 cut(s) 564, 753
BfuAI ACCTGC 1 cut(s) 1027
BfuI GTATCC 1 cut(s) 524
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 3 cut(s) 391, 473, 651
BlnI CCTAGG 1 cut(s) 1178
BlsI GCNGC 3 cut(s) 392, 474, 652
Bme1390I CCNGG 4 cut(s) 207, 415, 522, 969
Bme18I GGWCC 2 cut(s) 542, 1096
BmgT120I GGNCC 2 cut(s) 542, 1096
BmiI GGNNCC 3 cut(s) 96, 265, 519
BmrFI CCNGG 4 cut(s) 207, 415, 522, 969
BmsI GCATC 5 cut(s) 24, 400, 722, 973, 1203
BpiI GAAGAC 2 cut(s) 598, 989
BpmI CTGGAG 1 cut(s) 913
BpuMI CCSGG 1 cut(s) 969
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 4 cut(s) 90, 394, 414, 1178
BsaXI ACNNNNNCTCC 2 cut(s) 1130, 1160
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 1050, 1051
Bse1I ACTGG 4 cut(s) 774, 896, 950, 960
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 3 cut(s) 207, 415, 522
BseDI CCNNGG 4 cut(s) 90, 394, 414, 1178
BseGI GGATG 8 cut(s) 15, 227, 293, 331, 559, 737, 964, 1172
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 3 cut(s) 527, 1050, 1051
BseMII CTCAG 1 cut(s) 1328
BseNI ACTGG 4 cut(s) 774, 896, 950, 960
BseSI GKGCMC 2 cut(s) 235, 848
BseXI GCAGC 3 cut(s) 377, 484, 637
BseYI CCCAGC 2 cut(s) 217, 1022
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 2 cut(s) 263, 517
BsiSI CCGG 1 cut(s) 968
BslI CCNNNNNNNGG 3 cut(s) 527, 1050, 1051
BsmAI GTCTC 4 cut(s) 752, 1117, 1177, 1261
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 235, 848
Bsp143I GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
BspACI CCGC 2 cut(s) 540, 545
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 1327
BspLI GGNNCC 3 cut(s) 96, 265, 519
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 6 cut(s) 80, 89, 102, 554, 806, 894
BspT107I GGYRCC 2 cut(s) 263, 517
BsrI ACTGG 4 cut(s) 774, 896, 950, 960
BssECI CCNNGG 4 cut(s) 90, 394, 414, 1178
BssMI GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
BssNAI GTATAC 1 cut(s) 1058
BssT1I CCWWGG 2 cut(s) 90, 1178
Bst1107I GTATAC 1 cut(s) 1058
Bst2UI CCWGG 3 cut(s) 207, 415, 522
Bst4CI ACNGT 4 cut(s) 115, 568, 1007, 1229
Bst6I CTCTTC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 1314
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 8 cut(s) 15, 227, 293, 331, 559, 737, 964, 1172
BstKTI GATC 7 cut(s) 88, 97, 349, 562, 814, 838, 889
BstMAI GTCTC 4 cut(s) 752, 1117, 1177, 1261
BstMBI GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
BstMWI GCNNNNNNNGC 2 cut(s) 399, 732
BstNI CCWGG 3 cut(s) 207, 415, 522
BstNSI RCATGY 3 cut(s) 379, 630, 765
BstSCI CCNGG 4 cut(s) 205, 413, 520, 967
BstSFI CTRYAG 2 cut(s) 564, 753
BstSLI GKGCMC 2 cut(s) 235, 848
BstV1I GCAGC 3 cut(s) 377, 484, 637
BstV2I GAAGAC 2 cut(s) 598, 989
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BstZ17I GTATAC 1 cut(s) 1058
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 8 cut(s) 15, 227, 293, 331, 559, 737, 964, 1172
BtsIMutI CAGTG 3 cut(s) 387, 831, 889
BveI ACCTGC 1 cut(s) 1027
Cfr13I GGNCC 2 cut(s) 542, 1096
CpoI CGGWCCG 1 cut(s) 542
CsiI ACCWGGT 1 cut(s) 520
Csp6I GTAC 2 cut(s) 953, 1008
CspI CGGWCCG 1 cut(s) 542
CviAII CATG 9 cut(s) 194, 352, 376, 615, 627, 711, 762, 1141, 1332
CviQI GTAC 2 cut(s) 953, 1008
DdeI CTNAG 1 cut(s) 1314
DpnI GATC 7 cut(s) 87, 96, 348, 561, 813, 837, 888
DpnII GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
Eam1104I CTCTTC 1 cut(s) 448
EarI CTCTTC 1 cut(s) 448
Eco130I CCWWGG 2 cut(s) 90, 1178
Eco47I GGWCC 2 cut(s) 542, 1096
EcoRII CCWGG 3 cut(s) 205, 413, 520
EcoT14I CCWWGG 2 cut(s) 90, 1178
EcoT22I ATGCAT 1 cut(s) 767
ErhI CCWWGG 2 cut(s) 90, 1178
FaeI CATG 9 cut(s) 197, 355, 379, 618, 630, 714, 765, 1144, 1335
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 9 cut(s) 193, 351, 375, 614, 626, 710, 761, 1140, 1331
FauNDI CATATG 1 cut(s) 840
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 2 cut(s) 198, 1057
Fnu4HI GCNGC 3 cut(s) 391, 473, 651
FokI GGATG 8 cut(s) 2, 234, 280, 318, 566, 744, 951, 1179
Fsp4HI GCNGC 3 cut(s) 391, 473, 651
FspBI CTAG 4 cut(s) 47, 368, 1179, 1325
GluI GCNGC 3 cut(s) 391, 473, 651
GsaI CCCAGC 2 cut(s) 221, 1026
GsuI CTGGAG 1 cut(s) 913
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 968
Hin1II CATG 9 cut(s) 197, 355, 379, 618, 630, 714, 765, 1144, 1335
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 2 cut(s) 359, 1145
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 1 cut(s) 968
HphI GGTGA 2 cut(s) 256, 835
Hpy166II GTNNAC 4 cut(s) 199, 385, 1058, 1069
Hpy188I TCNGA 5 cut(s) 307, 453, 611, 943, 1212
Hpy188III TCNNGA 4 cut(s) 172, 335, 407, 815
Hpy8I GTNNAC 4 cut(s) 199, 385, 1058, 1069
Hpy99I CGWCG 1 cut(s) 787
HpyAV CCTTC 5 cut(s) 253, 307, 1087, 1129, 1159
HpyCH4III ACNGT 4 cut(s) 115, 568, 1007, 1229
HpyCH4IV ACGT 2 cut(s) 951, 1065
HpyCH4V TGCA 7 cut(s) 472, 494, 630, 735, 765, 831, 1268
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 732
HpyF3I CTNAG 1 cut(s) 1314
HpySE526I ACGT 2 cut(s) 951, 1065
Hsp92II CATG 9 cut(s) 197, 355, 379, 618, 630, 714, 765, 1144, 1335
Ksp22I TGATCA 1 cut(s) 835
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 3 cut(s) 377, 484, 637
LweI GCATC 5 cut(s) 24, 400, 722, 973, 1203
MabI ACCWGGT 1 cut(s) 520
MaeI CTAG 4 cut(s) 47, 368, 1179, 1325
MaeII ACGT 2 cut(s) 951, 1065
MaeIII GTNAC 1 cut(s) 163
MalI GATC 7 cut(s) 87, 96, 348, 561, 813, 837, 888
MboI GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
MboII GAAGA 6 cut(s) 354, 435, 603, 928, 994, 1144
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 2 cut(s) 235, 848
MluCI AATT 7 cut(s) 28, 76, 175, 466, 478, 909, 1261
MlyI GAGTC 1 cut(s) 1139
MnlI CCTC 6 cut(s) 31, 235, 439, 507, 1055, 1285
Mph1103I ATGCAT 1 cut(s) 767
MseI TTAA 2 cut(s) 456, 1068
MslI CAYNNNNRTG 2 cut(s) 321, 380
MspI CCGG 1 cut(s) 968
MspR9I CCNGG 4 cut(s) 207, 415, 522, 969
MunI CAATTG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 3 cut(s) 207, 415, 522
MwoI GCNNNNNNNGC 2 cut(s) 399, 732
NciI CCSGG 1 cut(s) 969
NdeI CATATG 1 cut(s) 840
NdeII GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
NlaIII CATG 9 cut(s) 197, 355, 379, 618, 630, 714, 765, 1144, 1335
NlaIV GGNNCC 3 cut(s) 96, 265, 519
NsiI ATGCAT 1 cut(s) 767
NspI RCATGY 3 cut(s) 379, 630, 765
OliI CACNNNNGTG 1 cut(s) 321
PciI ACATGT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 1071
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 3 cut(s) 392, 474, 652
PleI GAGTC 1 cut(s) 1139
PpsI GAGTC 1 cut(s) 1139
PscI ACATGT 1 cut(s) 375
Psp6I CCWGG 3 cut(s) 205, 413, 520
PspFI CCCAGC 2 cut(s) 217, 1022
PspGI CCWGG 3 cut(s) 205, 413, 520
PspN4I GGNNCC 3 cut(s) 96, 265, 519
PspPI GGNCC 2 cut(s) 542, 1096
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 2 cut(s) 954, 1009
RsaNI GTAC 2 cut(s) 953, 1008
RseI CAYNNNNRTG 2 cut(s) 321, 380
Rsr2I CGGWCCG 1 cut(s) 542
RsrII CGGWCCG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 456, 1068
SatI GCNGC 3 cut(s) 391, 473, 651
Sau3AI GATC 7 cut(s) 85, 94, 346, 559, 811, 835, 886
Sau96I GGNCC 2 cut(s) 542, 1096
SchI GAGTC 1 cut(s) 1139
ScrFI CCNGG 4 cut(s) 207, 415, 522, 969
SduI GDGCHC 2 cut(s) 235, 848
SexAI ACCWGGT 1 cut(s) 520
SfaNI GCATC 5 cut(s) 24, 400, 722, 973, 1203
SfcI CTRYAG 2 cut(s) 564, 753
SinI GGWCC 2 cut(s) 542, 1096
SmiMI CAYNNNNRTG 2 cut(s) 321, 380
SpeI ACTAGT 2 cut(s) 46, 1324
Sse9I AATT 7 cut(s) 28, 76, 175, 466, 478, 909, 1261
SsiI CCGC 2 cut(s) 540, 545
SspMI CTAG 4 cut(s) 47, 368, 1179, 1325
StyD4I CCNGG 4 cut(s) 205, 413, 520, 967
StyI CCWWGG 2 cut(s) 90, 1178
TaaI ACNGT 4 cut(s) 115, 568, 1007, 1229
TaiI ACGT 2 cut(s) 954, 1068
TaqI TCGA 4 cut(s) 123, 558, 785, 853
TasI AATT 7 cut(s) 28, 76, 175, 466, 478, 909, 1261
TatI WGTACW 1 cut(s) 1007
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 456, 1068
Tru9I TTAA 2 cut(s) 456, 1068
TscAI CASTG 3 cut(s) 387, 838, 896
TseI GCWGC 3 cut(s) 390, 472, 650
TspDTI ATGAA 3 cut(s) 272, 848, 1050
TspRI CASTG 3 cut(s) 387, 838, 896
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 542, 1096
XapI RAATTY 1 cut(s) 478
XceI RCATGY 3 cut(s) 379, 630, 765
XmaJI CCTAGG 1 cut(s) 1178
XmiI GTMKAC 2 cut(s) 198, 1057
XspI CTAG 4 cut(s) 47, 368, 1179, 1325
Zsp2I ATGCAT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.