Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014650

Physical Location & Seq

Genomic Coordinates Forward (+)

16855572 .. 16858321

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAACATGAGCCATCATCGTATTGATAGTCATATGTTGCTTCTTGTTTCTGATTGCTATGATCCTTTGGACCCAAATGGAAACTTTACGATTATTTTCGACACTTATGGTTGGACAGATGACGGCTATTTGGCAAAAGTAACCATCCAAAATTTATTTCAGTATCGTCACGTGGACAAGCCTGGTTGGCAGATTGGGTGGATATGGCAGCAGAATGAAGTCATTTGGTCAATGAATGGTGCCTTTGCCACAGAACAAGGAAACTGCTCAAACTACAAGACTGATATACCACACTCCTGCAAGAAAGATCCTGAAATACTTGATCTCATGCCTGATGCTTCTTCAGATAACAAATCCGAAGACTGCTGCCGCAGTGGTGTTCTTGATGCCCTGGCTATCAATCCCTCCAAGTCTTTCTCTTCCTTTGGAATTAAAGTTGGCAACTTGGGAGGAGCTCCTTTTTCAGGACATCCACCTCTGAATCTTACTCTGAATGCACCAGGTCCTGGTTACACTTGTGGGCCACTTAAGAGTGTTGATCCCACAGTTTCTTTAGATTTTGGGGGTAGAAGACAGCGCCAAGTTTTCAGAACATGGAAAGCAATATGCACTTATTCCAGTTATTTAGCTAGTGAGACTCCAGTCTGTTGCGTTTCACTCTCTTCATTTTACAATCCTGAGATCACATCATGCCCCAAGTGTAGCTGTGGATGCAGAGAAGTAACAGACAAAAACTTCGGTACATGTTTAAGGCCAGCTTACCCCTTCCCAGCAATGTCACTAACAGGGGATAATTCAGGAGCTAATTTTATGGGTGCTCAAGACCCGGTGAAATGCACAGATCATATGTGCCCTATTCGAGTTCATTGGCATGTCAAGACCAGCTATGTGGATCACTGGAGAATTAAACTTACAATTACTAACTACAACTATCAGAGGAACTTCTCAAACTGGAATGTACTGGTCCAGCACCCTGGTCTCTCCATGAATCCAATAACGTATAGTTTCAACAGCAAATTGCTTCAGCCTAGCTTTAGAGACGCAGTTGCCCTCTTCTGGGGTATAGCCTTTGTTAATGAAGAGCTGATTGCTACTGATGAGGATGGAGTGGGTTCAGTGTCAACAGAGATACTTTTGGAAAAAGACTCAGAATCATTCACATTCAAAAATGGATGGGCTTTTCCAAGAAGGGTATATTTCAATGGAGAAAACTGTGAGATGCCCTTACCAGACACTTTCCCAATGTTACCAAATGGCACCTCCAAAACACAACCACCAACACATTGGCTCTTCCATCTTCTCATCTTTTTGATTTCCCATCTTCTCATCTTACATGCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

448

Amino Acids

50.19

Weight (kDa)

5.99

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02160
malus_domestica	MD05G1114600.v1.1
prunus_persica	Prupe.8G159300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245661
rosa_laevigata	RLG00000015295
rosa_multiflora	Rmu_sc0008277.1_g000013 Rmu_sc0040933.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215140
rosa_rugosa	Rorug05G0515400 Rorug05G0515500 Rorug05G0515600 Rorug05G0515700
rosa_samantha	Rh6AG030100 Rh6BG027500 Rh6CG026800 Rh6DG026200
rosa_wichuraiana	Rw6G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	239, 1256
AccB7I	CCANNNNNTGG	1 cut(s)	506
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	4 cut(s)	56, 302, 533, 900
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	2 cut(s)	327, 1007
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	742, 960
AfiI	CCNNNNNNNGG	4 cut(s)	464, 506, 1056, 1057
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	743
AgsI	TTSAA	3 cut(s)	1009, 1165, 1201
AjnI	CCWGG	5 cut(s)	181, 390, 499, 505, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	8 cut(s)	455, 629, 705, 758, 803, 885, 1032, 1084
AluI	AGCT	8 cut(s)	455, 629, 705, 758, 803, 885, 1032, 1084
Alw21I	GWGCWC	2 cut(s)	457, 820
Alw26I	GTCTC	3 cut(s)	629, 983, 1032
AlwI	GGATC	4 cut(s)	56, 302, 533, 900
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	521, 752
ApeKI	GCWGC	2 cut(s)	208, 366
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	4 cut(s)	70, 503, 521, 964
AsuC2I	CCSGG	1 cut(s)	827
AsuHPI	GGTGA	1 cut(s)	841
AvaII	GGWCC	3 cut(s)	70, 503, 964
BaeGI	GKGCMC	1 cut(s)	854
BanI	GGYRCC	2 cut(s)	239, 1256
BanII	GRGCYC	1 cut(s)	457
BbrPI	CACGTG	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	366, 577
Bbv12I	GWGCWC	2 cut(s)	457, 820
BbvI	GCAGC	2 cut(s)	220, 353
BccI	CCATC	6 cut(s)	21, 152, 1097, 1167, 1302, 1326
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	5 cut(s)	183, 392, 501, 507, 975
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	3 cut(s)	629, 983, 1032
BfaI	CTAG	2 cut(s)	630, 1029
BfoI	RGCGCY	1 cut(s)	580
BfrI	CTTAAG	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	3 cut(s)	209, 367, 370
BlsI	GCNGC	3 cut(s)	210, 368, 371
Bme1390I	CCNGG	6 cut(s)	183, 392, 501, 507, 827, 975
Bme18I	GGWCC	3 cut(s)	70, 503, 964
BmgT120I	GGNCC	4 cut(s)	70, 503, 521, 964
BmiI	GGNNCC	3 cut(s)	72, 241, 1258
BmrFI	CCNGG	6 cut(s)	183, 392, 501, 507, 827, 975
BmsI	GCATC	4 cut(s)	325, 376, 701, 1209
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	2 cut(s)	366, 577
BpmI	CTGGAG	2 cut(s)	624, 919
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	1 cut(s)	827
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	390, 973
Bsc4I	CCNNNNNNNGG	4 cut(s)	464, 506, 1056, 1057
Bse1I	ACTGG	5 cut(s)	618, 641, 902, 956, 966
Bse3DI	GCAATG	1 cut(s)	780
BseBI	CCWGG	5 cut(s)	183, 392, 501, 507, 975
BseDI	CCNNGG	2 cut(s)	390, 973
BseGI	GGATG	5 cut(s)	144, 469, 716, 1108, 1178
BseLI	CCNNNNNNNGG	4 cut(s)	464, 506, 1056, 1057
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	669, 1161
BseNI	ACTGG	5 cut(s)	618, 641, 902, 956, 966
BseRI	GAGGAG	1 cut(s)	465
BseSI	GKGCMC	1 cut(s)	854
BseXI	GCAGC	2 cut(s)	220, 353
BseYI	CCCAGC	1 cut(s)	769
BshFI	GGCC	2 cut(s)	523, 754
BshNI	GGYRCC	2 cut(s)	239, 1256
BsiHKAI	GWGCWC	2 cut(s)	457, 820
BsiSI	CCGG	1 cut(s)	827
BslI	CCNNNNNNNGG	4 cut(s)	464, 506, 1056, 1057
BsmAI	GTCTC	3 cut(s)	629, 983, 1032
BsmBI	CGTCTC	1 cut(s)	1032
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	523, 754
Bso31I	GGTCTC	1 cut(s)	983
Bsp1286I	GDGCHC	3 cut(s)	457, 820, 854
Bsp143I	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	2 cut(s)	523, 754
BspCNI	CTCAG	2 cut(s)	670, 1160
BspLI	GGNNCC	3 cut(s)	72, 241, 1258
BspPI	GGATC	4 cut(s)	56, 302, 533, 900
BspQI	GCTCTTC	2 cut(s)	1074, 1295
BspT107I	GGYRCC	2 cut(s)	239, 1256
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	983
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	5 cut(s)	618, 641, 902, 956, 966
BssECI	CCNNGG	2 cut(s)	390, 973
BssMI	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
Bst2UI	CCWGG	5 cut(s)	183, 392, 501, 507, 975
Bst4CI	ACNGT	2 cut(s)	547, 1214
Bst6I	CTCTTC	5 cut(s)	424, 667, 1058, 1074, 1295
BstAFI	CTTAAG	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	2 cut(s)	678, 1147
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	5 cut(s)	144, 469, 716, 1108, 1178
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	7 cut(s)	64, 310, 325, 541, 684, 844, 895
BstMAI	GTCTC	3 cut(s)	629, 983, 1032
BstMBI	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 711
BstNI	CCWGG	5 cut(s)	183, 392, 501, 507, 975
BstNSI	RCATGY	3 cut(s)	747, 875, 1337
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSCI	CCNGG	6 cut(s)	181, 390, 499, 505, 825, 973
BstSLI	GKGCMC	1 cut(s)	854
BstV1I	GCAGC	2 cut(s)	220, 353
BstV2I	GAAGAC	2 cut(s)	366, 577
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	3 cut(s)	889, 974, 1284
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	523, 754
BtsCI	GGATG	5 cut(s)	144, 469, 716, 1108, 1178
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	379, 895, 1122
Cac8I	GCNNGC	1 cut(s)	756
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	4 cut(s)	70, 503, 521, 964
CseI	GACGC	1 cut(s)	1049
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	741, 959
CviAII	CATG	8 cut(s)	7, 328, 594, 690, 744, 872, 985, 1334
CviQI	GTAC	2 cut(s)	741, 959
DdeI	CTNAG	2 cut(s)	678, 1147
DpnI	GATC	7 cut(s)	63, 309, 324, 540, 683, 843, 894
DpnII	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
Eam1104I	CTCTTC	5 cut(s)	424, 667, 1058, 1074, 1295
EarI	CTCTTC	5 cut(s)	424, 667, 1058, 1074, 1295
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	983
Eco47I	GGWCC	3 cut(s)	70, 503, 964
Eco53kI	GAGCTC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	327, 1007
Eco72I	CACGTG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	5 cut(s)	181, 390, 499, 505, 973
EcoT38I	GRGCYC	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	1032
FaeI	CATG	8 cut(s)	10, 331, 597, 693, 747, 875, 988, 1337
FalI	AAGNNNNNCTT	2 cut(s)	742, 774
FatI	CATG	8 cut(s)	6, 327, 593, 689, 743, 871, 984, 1333
FauNDI	CATATG	2 cut(s)	33, 846
Fnu4HI	GCNGC	3 cut(s)	209, 367, 370
FokI	GGATG	5 cut(s)	131, 456, 723, 1115, 1185
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	209, 367, 370
FspBI	CTAG	2 cut(s)	630, 1029
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	3 cut(s)	209, 367, 370
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	624, 919
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	2 cut(s)	523, 754
HapII	CCGG	1 cut(s)	827
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	8 cut(s)	10, 331, 597, 693, 747, 875, 988, 1337
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	1122
HindII	GTYRAC	1 cut(s)	1122
HinfI	GANTC	5 cut(s)	481, 637, 988, 1145, 1151
HpaII	CCGG	1 cut(s)	827
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	2 cut(s)	175, 1122
Hpy188I	TCNGA	8 cut(s)	52, 346, 358, 480, 492, 590, 936, 1150
Hpy188III	TCNNGA	7 cut(s)	311, 383, 465, 677, 798, 821, 877
Hpy8I	GTNNAC	2 cut(s)	175, 1122
HpyAV	CCTTC	2 cut(s)	775, 1182
HpyCH4III	ACNGT	2 cut(s)	547, 1214
HpyCH4IV	ACGT	2 cut(s)	171, 998
HpyCH4V	TGCA	5 cut(s)	300, 497, 609, 714, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 711
HpyF3I	CTNAG	2 cut(s)	678, 1147
HpySE526I	ACGT	2 cut(s)	171, 998
Hsp92II	CATG	8 cut(s)	10, 331, 597, 693, 747, 875, 988, 1337
HspAI	GCGC	1 cut(s)	577
Kzo9I	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
LguI	GCTCTTC	2 cut(s)	1074, 1295
LmnI	GCTCC	3 cut(s)	452, 460, 800
Lsp1109I	GCAGC	2 cut(s)	220, 353
LweI	GCATC	4 cut(s)	325, 376, 701, 1209
MabI	ACCWGGT	1 cut(s)	499
MaeI	CTAG	2 cut(s)	630, 1029
MaeII	ACGT	2 cut(s)	171, 998
MaeIII	GTNAC	6 cut(s)	139, 167, 509, 721, 777, 1245
MalI	GATC	7 cut(s)	63, 309, 324, 540, 683, 843, 894
MboI	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	3 cut(s)	457, 820, 854
MluCI	AATT	7 cut(s)	151, 429, 793, 805, 903, 915, 1016
MlyI	GAGTC	2 cut(s)	631, 1139
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	415, 443, 486, 930, 1061, 1093, 1270
MseI	TTAA	5 cut(s)	432, 528, 749, 906, 1074
MslI	CAYNNNNRTG	1 cut(s)	870
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	1 cut(s)	827
MspR9I	CCNGG	6 cut(s)	183, 392, 501, 507, 827, 975
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	5 cut(s)	183, 392, 501, 507, 975
MwoI	GCNNNNNNNGC	2 cut(s)	187, 711
NciI	CCSGG	1 cut(s)	827
NdeI	CATATG	2 cut(s)	33, 846
NdeII	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
NlaIII	CATG	8 cut(s)	10, 331, 597, 693, 747, 875, 988, 1337
NlaIV	GGNNCC	3 cut(s)	72, 241, 1258
NmuCI	GTSAC	2 cut(s)	167, 777
NspI	RCATGY	3 cut(s)	747, 875, 1337
PciI	ACATGT	1 cut(s)	743
PciSI	GCTCTTC	2 cut(s)	1074, 1295
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	481, 988, 1151
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	210, 368, 371
PleI	GAGTC	2 cut(s)	631, 1139
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	2 cut(s)	631, 1139
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	503
PscI	ACATGT	1 cut(s)	743
PshAI	GACNNNNGTC	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	5 cut(s)	181, 390, 499, 505, 973
PspCI	CACGTG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	5 cut(s)	181, 390, 499, 505, 973
PspN4I	GGNNCC	3 cut(s)	72, 241, 1258
PspPI	GGNCC	4 cut(s)	70, 503, 521, 964
PspPPI	RGGWCCY	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	742, 960
RsaNI	GTAC	2 cut(s)	741, 959
RseI	CAYNNNNRTG	1 cut(s)	870
SacI	GAGCTC	1 cut(s)	457
SapI	GCTCTTC	2 cut(s)	1074, 1295
SaqAI	TTAA	5 cut(s)	432, 528, 749, 906, 1074
SatI	GCNGC	3 cut(s)	209, 367, 370
Sau3AI	GATC	7 cut(s)	61, 307, 322, 538, 681, 841, 892
Sau96I	GGNCC	4 cut(s)	70, 503, 521, 964
SchI	GAGTC	2 cut(s)	631, 1139
ScrFI	CCNGG	6 cut(s)	183, 392, 501, 507, 827, 975
SduI	GDGCHC	3 cut(s)	457, 820, 854
SexAI	ACCWGGT	1 cut(s)	499
SfaNI	GCATC	4 cut(s)	325, 376, 701, 1209
SinI	GGWCC	3 cut(s)	70, 503, 964
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	2 cut(s)	527, 819
SmoI	CTYRAG	2 cut(s)	527, 819
Sse9I	AATT	7 cut(s)	151, 429, 793, 805, 903, 915, 1016
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	2 cut(s)	630, 1029
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	6 cut(s)	181, 390, 499, 505, 825, 973
TaaI	ACNGT	2 cut(s)	547, 1214
TaiI	ACGT	2 cut(s)	174, 1001
TaqI	TCGA	2 cut(s)	99, 859
TasI	AATT	7 cut(s)	151, 429, 793, 805, 903, 915, 1016
TatI	WGTACW	1 cut(s)	958
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	3 cut(s)	481, 988, 1151
Tru1I	TTAA	5 cut(s)	432, 528, 749, 906, 1074
Tru9I	TTAA	5 cut(s)	432, 528, 749, 906, 1074
TscAI	CASTG	3 cut(s)	379, 902, 1122
TseFI	GTSAC	2 cut(s)	167, 777
TseI	GCWGC	2 cut(s)	208, 366
Tsp45I	GTSAC	2 cut(s)	167, 777
TspDTI	ATGAA	7 cut(s)	17, 231, 248, 654, 854, 1001, 1092
TspRI	CASTG	3 cut(s)	379, 902, 1122
Van91I	CCANNNNNTGG	1 cut(s)	506
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	70, 503, 964
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	3 cut(s)	747, 875, 1337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1281
XspI	CTAG	2 cut(s)	630, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.