Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014650

Physical Location & Seq

Genomic Coordinates Reverse (-)

1420970 .. 1423904

Gene Structure 2935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCATTCATCAGCATCCCCTCTAATAATTTGTGGCCTTTCGCACTAGTGTTGATAATAGTAGTTGCTATAAGCAGTTTATCAGGCATGAGACATCATCGAGTTGTTATTCCTTCGCTACTTCTTTTGTTTCGAGTTTTGGGAGAGATCAATTGCTATGATCCCTTGGATCCAAATGGAAATATAACAGTTATTTTCGACACTTACCAATGGGAAAATGATGGCTATTTGGCGAAAGTAACTATCCAGAATTACTACCAATATCGTCATGTAGACAAGCCTGGTTGGGAGCTGGGATGGATATGGGCACAGAATGAGGTGATTTGGTCAATGAAGGGTGCCTTTGCTACCAAACAAGGAAACTGCTCATCCTTCAAGTCAGATATACCACACTCCTGTGTGAAACATCCCGAAATAGTTGATCTCATGCCAGATTCTTCCCTAGAAAACATGTCAGTGGACTGCTGCCGTGGTGGCGTTCTTGATGCCTGGGCTATCAACCCCTCCAAGTCATTCTCTTCCTTTCAAATTAAAGTCGGCAATTTGCAGCAAAATTCTTTTGGAAGTGCACCTCTCAACCTTACTTTGATGGCACCAGGTCTTGGATACACTTGCGGACCGCTTTTGGATGTCGATCCTACAGTTTCTTTGGATATTGGGGGTAGAAGACAAGTTCAAGTTTTCAGAACATGGAAAGCAACATGCACTTATTCAAGTTTTATAGCTGCTGAAACACCGGTCTGTTGTGTTTCACTCTCTACATTCTACAATCCTACCATCACATCATGCCCCTTGTGTAGCTGTGGATGCAGATTAGCAGATAAAACTACAGAGACATGCATAAGAACCAGTTTCCCGTCGATAATAACAAATGATATTCAAAGTGATCCTGATGTGGTGAAATGTACTGATCATATGTGCCCTGTTCGAGTTCATTGGCATATTATGAGCAACTATGTGGATCATTGGAGAGTAAAACTTACAATTACCAACTATAACTATAATAAAATCTTCTCGGACTGGAACGTACTGGTTCAGCATCCGGGTTTCAGCCAGAAGACAACAATATATAGTTTCAACAGTACAATGCTACCTGCTGGGTTTAGAGATGAAGTTGCCCTCTTTTGGGGTATACCCTACGTTAACACCGAGCTGATTTCCACCAAGAAGGACCAAGTGGGTTCAGTCTCAACTGAAATGCTTTTGAAGAAGGACATGGACTCCTTCACATTCTCAAATGGATGGGCTTTCCCTAGGAGACTATATTTCAATGGAGAGAGTTGTCAGATGCCCCTACCAGACAGTTTCCCAACTTTACCAAATGGTGCTGTCTCCAATTTTGCAAAACCCTCACATTGTCTTTTCCTGCTTTTGACATTTTTGATTTCTCAGGCACTACTAGTTCCATGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

471

Amino Acids

52.82

Weight (kDa)

6.4

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	76 - 238	2e-56	COBRA-like protein
COB_C	PF25079	248 - 437	3.3e-43	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02160
malus_domestica	MD05G1114600.v1.1
prunus_persica	Prupe.8G159300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245661
rosa_laevigata	RLG00000015295
rosa_multiflora	Rmu_sc0008277.1_g000013 Rmu_sc0040933.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215140
rosa_rugosa	Rorug05G0515400 Rorug05G0515500 Rorug05G0515600 Rorug05G0515700
rosa_samantha	Rh6AG030100 Rh6BG027500 Rh6CG026800 Rh6DG026200
rosa_wichuraiana	Rw6G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1102
AccB1I	GGYRCC	2 cut(s)	338, 592
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccI	GTMKAC	2 cut(s)	273, 1132
AciI	CCGC	2 cut(s)	615, 620
AclWI	GGATC	6 cut(s)	155, 164, 177, 629, 881, 969
AcsI	RAATTY	1 cut(s)	553
AfaI	GTAC	3 cut(s)	907, 1029, 1084
AfiI	CCNNNNNNNGG	3 cut(s)	602, 1125, 1126
AflIII	ACRYGT	1 cut(s)	450
AgeI	ACCGGT	1 cut(s)	736
AgsI	TTSAA	8 cut(s)	376, 527, 677, 714, 881, 1078, 1207, 1270
AhlI	ACTAGT	2 cut(s)	46, 1399
AjnI	CCWGG	3 cut(s)	280, 488, 595
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	292, 725, 801, 1153
AluI	AGCT	4 cut(s)	292, 725, 801, 1153
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	5 cut(s)	85, 827, 1192, 1252, 1336
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	6 cut(s)	155, 164, 177, 629, 881, 969
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	3 cut(s)	465, 547, 725
ApoI	RAATTY	1 cut(s)	553
AsiGI	ACCGGT	1 cut(s)	736
AspA2I	CCTAGG	1 cut(s)	1253
AspS9I	GGNCC	2 cut(s)	617, 1171
AsuC2I	CCSGG	1 cut(s)	1044
AsuHPI	GGTGA	2 cut(s)	331, 910
AvaII	GGWCC	2 cut(s)	617, 1171
AvrII	CCTAGG	1 cut(s)	1253
BaeGI	GKGCMC	3 cut(s)	310, 571, 923
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	338, 592
BbsI	GAAGAC	2 cut(s)	673, 1064
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	452, 559, 712
BccI	CCATC	5 cut(s)	215, 291, 583, 785, 1236
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	3 cut(s)	282, 490, 597
BciVI	GTATCC	1 cut(s)	599
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	1 cut(s)	1044
BcoDI	GTCTC	5 cut(s)	85, 827, 1192, 1252, 1336
BcuI	ACTAGT	2 cut(s)	46, 1399
BfaI	CTAG	4 cut(s)	47, 443, 1254, 1400
BfmI	CTRYAG	2 cut(s)	639, 828
BfuAI	ACCTGC	1 cut(s)	1102
BfuI	GTATCC	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	474
BisI	GCNGC	3 cut(s)	466, 548, 726
BlnI	CCTAGG	1 cut(s)	1253
BlsI	GCNGC	3 cut(s)	467, 549, 727
Bme1390I	CCNGG	4 cut(s)	282, 490, 597, 1044
Bme18I	GGWCC	2 cut(s)	617, 1171
BmgT120I	GGNCC	2 cut(s)	617, 1171
BmiI	GGNNCC	3 cut(s)	171, 340, 594
BmrFI	CCNGG	4 cut(s)	282, 490, 597, 1044
BmsI	GCATC	5 cut(s)	24, 475, 797, 1048, 1278
BpiI	GAAGAC	2 cut(s)	673, 1064
BpuMI	CCSGG	1 cut(s)	1044
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	4 cut(s)	165, 469, 489, 1253
BsaWI	WCCGGW	1 cut(s)	736
BsaXI	ACNNNNNCTCC	2 cut(s)	1205, 1235
Bsc4I	CCNNNNNNNGG	3 cut(s)	602, 1125, 1126
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	3 cut(s)	849, 1025, 1035
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	3 cut(s)	282, 490, 597
BseDI	CCNNGG	4 cut(s)	165, 469, 489, 1253
BseGI	GGATG	8 cut(s)	15, 302, 368, 406, 634, 812, 1039, 1247
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	3 cut(s)	602, 1125, 1126
BseMII	CTCAG	1 cut(s)	1403
BseNI	ACTGG	3 cut(s)	849, 1025, 1035
BseSI	GKGCMC	3 cut(s)	310, 571, 923
BseXI	GCAGC	3 cut(s)	452, 559, 712
BseYI	CCCAGC	2 cut(s)	292, 1097
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	2 cut(s)	338, 592
BshTI	ACCGGT	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	737, 1043
BslI	CCNNNNNNNGG	3 cut(s)	602, 1125, 1126
BsmAI	GTCTC	5 cut(s)	85, 827, 1192, 1252, 1336
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	310, 571, 923
Bsp143I	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
BspACI	CCGC	2 cut(s)	615, 620
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	1402
BspLI	GGNNCC	3 cut(s)	171, 340, 594
BspMI	ACCTGC	1 cut(s)	1102
BspPI	GGATC	6 cut(s)	155, 164, 177, 629, 881, 969
BspT107I	GGYRCC	2 cut(s)	338, 592
BsrFI	RCCGGY	1 cut(s)	736
BsrI	ACTGG	3 cut(s)	849, 1025, 1035
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	4 cut(s)	165, 469, 489, 1253
BssMI	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
BssNAI	GTATAC	1 cut(s)	1133
BssT1I	CCWWGG	2 cut(s)	165, 1253
Bst1107I	GTATAC	1 cut(s)	1133
Bst2UI	CCWGG	3 cut(s)	282, 490, 597
Bst4CI	ACNGT	4 cut(s)	190, 643, 1082, 1304
Bst6I	CTCTTC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	1389
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	8 cut(s)	15, 302, 368, 406, 634, 812, 1039, 1247
BstKTI	GATC	8 cut(s)	150, 163, 172, 424, 637, 889, 913, 964
BstMAI	GTCTC	5 cut(s)	85, 827, 1192, 1252, 1336
BstMBI	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 807
BstNI	CCWGG	3 cut(s)	282, 490, 597
BstNSI	RCATGY	3 cut(s)	454, 705, 840
BstSCI	CCNGG	4 cut(s)	280, 488, 595, 1042
BstSFI	CTRYAG	2 cut(s)	639, 828
BstSLI	GKGCMC	3 cut(s)	310, 571, 923
BstV1I	GCAGC	3 cut(s)	452, 559, 712
BstV2I	GAAGAC	2 cut(s)	673, 1064
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	1133
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	8 cut(s)	15, 302, 368, 406, 634, 812, 1039, 1247
BtsIMutI	CAGTG	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	1102
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	617, 1171
CpoI	CGGWCCG	1 cut(s)	617
CsiI	ACCWGGT	1 cut(s)	595
Csp6I	GTAC	3 cut(s)	906, 1028, 1083
CspAI	ACCGGT	1 cut(s)	736
CspI	CGGWCCG	1 cut(s)	617
CviQI	GTAC	3 cut(s)	906, 1028, 1083
DdeI	CTNAG	1 cut(s)	1389
DpnI	GATC	8 cut(s)	149, 162, 171, 423, 636, 888, 912, 963
DpnII	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	165, 1253
Eco47I	GGWCC	2 cut(s)	617, 1171
EcoRII	CCWGG	3 cut(s)	280, 488, 595
EcoT14I	CCWWGG	2 cut(s)	165, 1253
EcoT22I	ATGCAT	1 cut(s)	842
ErhI	CCWWGG	2 cut(s)	165, 1253
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	1 cut(s)	910
FblI	GTMKAC	2 cut(s)	273, 1132
Fnu4HI	GCNGC	3 cut(s)	466, 548, 726
FokI	GGATG	8 cut(s)	2, 309, 355, 393, 641, 819, 1026, 1254
Fsp4HI	GCNGC	3 cut(s)	466, 548, 726
FspBI	CTAG	4 cut(s)	47, 443, 1254, 1400
GluI	GCNGC	3 cut(s)	466, 548, 726
GsaI	CCCAGC	2 cut(s)	296, 1101
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	737, 1043
HincII	GTYRAC	1 cut(s)	1144
HindII	GTYRAC	1 cut(s)	1144
HinfI	GANTC	2 cut(s)	434, 1220
HpaI	GTTAAC	1 cut(s)	1144
HpaII	CCGG	2 cut(s)	737, 1043
HphI	GGTGA	2 cut(s)	331, 910
Hpy166II	GTNNAC	5 cut(s)	274, 460, 569, 1133, 1144
Hpy188I	TCNGA	4 cut(s)	382, 686, 1018, 1287
Hpy188III	TCNNGA	4 cut(s)	247, 410, 482, 890
Hpy8I	GTNNAC	5 cut(s)	274, 460, 569, 1133, 1144
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	6 cut(s)	123, 328, 382, 1162, 1204, 1234
HpyCH4III	ACNGT	4 cut(s)	190, 643, 1082, 1304
HpyCH4IV	ACGT	2 cut(s)	1026, 1140
HpyCH4V	TGCA	6 cut(s)	547, 569, 705, 810, 840, 1343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 807
HpyF3I	CTNAG	1 cut(s)	1389
HpySE526I	ACGT	2 cut(s)	1026, 1140
Ksp22I	TGATCA	1 cut(s)	910
KspAI	GTTAAC	1 cut(s)	1144
Kzo9I	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	3 cut(s)	452, 559, 712
LweI	GCATC	5 cut(s)	24, 475, 797, 1048, 1278
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	4 cut(s)	47, 443, 1254, 1400
MaeII	ACGT	2 cut(s)	1026, 1140
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	8 cut(s)	149, 162, 171, 423, 636, 888, 912, 963
MboI	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
MboII	GAAGA	6 cut(s)	429, 510, 678, 1003, 1069, 1219
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	310, 571, 923
MluCI	AATT	8 cut(s)	28, 151, 250, 528, 541, 553, 984, 1336
MlyI	GAGTC	1 cut(s)	1214
MnlI	CCTC	6 cut(s)	31, 310, 514, 582, 1130, 1360
Mph1103I	ATGCAT	1 cut(s)	842
MseI	TTAA	2 cut(s)	531, 1143
MslI	CAYNNNNRTG	2 cut(s)	396, 455
MspI	CCGG	2 cut(s)	737, 1043
MspR9I	CCNGG	4 cut(s)	282, 490, 597, 1044
MunI	CAATTG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	3 cut(s)	282, 490, 597
MwoI	GCNNNNNNNGC	2 cut(s)	474, 807
NciI	CCSGG	1 cut(s)	1044
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
NlaIV	GGNNCC	3 cut(s)	171, 340, 594
NsiI	ATGCAT	1 cut(s)	842
NspI	RCATGY	3 cut(s)	454, 705, 840
OliI	CACNNNNGTG	1 cut(s)	396
PciI	ACATGT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	1146
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	602
PinAI	ACCGGT	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	467, 549, 727
PleI	GAGTC	1 cut(s)	1214
PpsI	GAGTC	1 cut(s)	1214
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	280, 488, 595
PspFI	CCCAGC	2 cut(s)	292, 1097
PspGI	CCWGG	3 cut(s)	280, 488, 595
PspN4I	GGNNCC	3 cut(s)	171, 340, 594
PspPI	GGNCC	2 cut(s)	617, 1171
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	3 cut(s)	907, 1029, 1084
RsaNI	GTAC	3 cut(s)	906, 1028, 1083
RseI	CAYNNNNRTG	2 cut(s)	396, 455
Rsr2I	CGGWCCG	1 cut(s)	617
RsrII	CGGWCCG	1 cut(s)	617
SaqAI	TTAA	2 cut(s)	531, 1143
SatI	GCNGC	3 cut(s)	466, 548, 726
Sau3AI	GATC	8 cut(s)	147, 160, 169, 421, 634, 886, 910, 961
Sau96I	GGNCC	2 cut(s)	617, 1171
SchI	GAGTC	1 cut(s)	1214
ScrFI	CCNGG	4 cut(s)	282, 490, 597, 1044
SduI	GDGCHC	3 cut(s)	310, 571, 923
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	5 cut(s)	24, 475, 797, 1048, 1278
SfcI	CTRYAG	2 cut(s)	639, 828
SinI	GGWCC	2 cut(s)	617, 1171
SmiMI	CAYNNNNRTG	2 cut(s)	396, 455
SpeI	ACTAGT	2 cut(s)	46, 1399
Sse9I	AATT	8 cut(s)	28, 151, 250, 528, 541, 553, 984, 1336
SsiI	CCGC	2 cut(s)	615, 620
SspMI	CTAG	4 cut(s)	47, 443, 1254, 1400
StyD4I	CCNGG	4 cut(s)	280, 488, 595, 1042
StyI	CCWWGG	2 cut(s)	165, 1253
TaaI	ACNGT	4 cut(s)	190, 643, 1082, 1304
TaiI	ACGT	2 cut(s)	1029, 1143
TaqI	TCGA	6 cut(s)	100, 133, 198, 633, 860, 928
TasI	AATT	8 cut(s)	28, 151, 250, 528, 541, 553, 984, 1336
TatI	WGTACW	2 cut(s)	905, 1082
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	531, 1143
Tru9I	TTAA	2 cut(s)	531, 1143
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	3 cut(s)	465, 547, 725
TspDTI	ATGAA	3 cut(s)	347, 923, 1125
TspRI	CASTG	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	617, 1171
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	3 cut(s)	454, 705, 840
XmaJI	CCTAGG	1 cut(s)	1253
XmiI	GTMKAC	2 cut(s)	273, 1132
XspI	CTAG	4 cut(s)	47, 443, 1254, 1400
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.