Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Reverse (-)

2173936 .. 2174616

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCAAGTGTTGCTCGCTTACAACTCCATACGCTTCGGTTTTCTAATTTGTCCAAGTCCACCTCTTTGAATTCACAGCAACCGGGTCTCTTTGTTAATCAAAACCCATTTAGGAGGGCCTATTCTCTCCCGGATTCTTCCCTTGCTCGCTCTGTTTCTTACAGACCCAGAAAGCAGTTTGTACATTTCAAGGCACAGGCCGCTGTTGCTGAAACAGACCAACCAGAATGGTGGGAAAGAAGTGTTCCGAATATGATTGACATACGTTCAACTCAAGAATTCGTAAGTGCTTTAGCTGAAGCTGGAGATAGATTAGTTCTCGTAGAATTCTACGCTCCTTCGTGTCGTTCTTGCCGTGCATTATTTCCTAAGCTCTGCAAAACAGCTGAGGATCACCCTGAGATTCTATTTCTGAAAGTGAATTTTGATGAGAACAAGAAATTGTGCGAAATTATGAAAGTGAAGGTCCTTCCCTATTTCCACTTTTACAGTGCATCTGAGGGACAGCTCGAATCCTTTGCATGTTCATTAGCTAGCTTCCAGAAAATAAAGGATGCTATTCAATTACACAACACTACTCGTTGCAGCATCGGCTCTGATCCAAAGGGTGTTGGAGATATTAAACTGGAACCTTTCCTTGGTTCAGAAGGACAAACCCTAGGAGAATCTTCTTCAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

227

Amino Acids

25.33

Weight (kDa)

8.5

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	90 - 171	5.5e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	399, 593
AcsI	RAATTY	4 cut(s)	70, 278, 326, 421
AcuI	CTGAAG	2 cut(s)	318, 657
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	4 cut(s)	70, 190, 270, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	7 cut(s)	296, 302, 373, 386, 508, 533, 537
AluI	AGCT	7 cut(s)	296, 302, 373, 386, 508, 533, 537
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	399, 593
AoxI	GGCC	2 cut(s)	117, 198
ApeKI	GCWGC	1 cut(s)	585
ApoI	RAATTY	4 cut(s)	70, 278, 326, 421
AspA2I	CCTAGG	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	117, 466
AsuC2I	CCSGG	2 cut(s)	84, 131
AsuHPI	GGTGA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	466
AvrII	CCTAGG	1 cut(s)	658
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	597
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BcnI	CCSGG	2 cut(s)	84, 131
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	534, 659
BisI	GCNGC	2 cut(s)	201, 586
BlnI	CCTAGG	1 cut(s)	658
BlsI	GCNGC	2 cut(s)	202, 587
Bme1390I	CCNGG	2 cut(s)	84, 131
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	117, 466
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	2 cut(s)	84, 131
BmsI	GCATC	3 cut(s)	503, 544, 597
BmtI	GCTAGC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	2 cut(s)	369, 387
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	84, 131
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	637, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	637, 658
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	3 cut(s)	378, 390, 489
BseNI	ACTGG	1 cut(s)	630
BseXI	GCAGC	1 cut(s)	597
BshFI	GGCC	2 cut(s)	119, 200
BsiSI	CCGG	2 cut(s)	83, 131
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	119, 200
Bso31I	GGTCTC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	391, 598
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	119, 200
BspCNI	CTCAG	3 cut(s)	379, 391, 490
BspLI	GGNNCC	1 cut(s)	630
BspOI	GCTAGC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	399, 593
BspTNI	GGTCTC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	2 cut(s)	637, 658
BssMI	GATC	2 cut(s)	391, 598
BssT1I	CCWWGG	2 cut(s)	637, 658
Bst4CI	ACNGT	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	16, 148, 535
BstDEI	CTNAG	4 cut(s)	369, 387, 399, 498
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	2 cut(s)	394, 601
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	391, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 200, 206, 591
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	82, 129
BstV1I	GCAGC	1 cut(s)	597
BstXI	CCANNNNNNTGG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	119, 200
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	496
Cac8I	GCNNGC	3 cut(s)	16, 148, 535
Cfr13I	GGNCC	2 cut(s)	117, 466
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	1 cut(s)	522
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	369, 387, 399, 498
DpnI	GATC	2 cut(s)	393, 600
DpnII	GATC	2 cut(s)	391, 598
Eco130I	CCWWGG	2 cut(s)	637, 658
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	2 cut(s)	318, 657
EcoO109I	RGGNCCY	2 cut(s)	117, 466
EcoRI	GAATTC	3 cut(s)	70, 278, 326
EcoT14I	CCWWGG	2 cut(s)	637, 658
ErhI	CCWWGG	2 cut(s)	637, 658
FaeI	CATG	1 cut(s)	525
FaiI	YATR	5 cut(s)	30, 254, 263, 455, 523
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	201, 586
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	201, 586
FspBI	CTAG	2 cut(s)	534, 659
GluI	GCNGC	2 cut(s)	201, 586
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	119, 200
HapII	CCGG	2 cut(s)	83, 131
Hin1II	CATG	1 cut(s)	525
HinfI	GANTC	4 cut(s)	134, 403, 512, 665
HpaII	CCGG	2 cut(s)	83, 131
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	5 cut(s)	249, 414, 499, 598, 646
Hpy188III	TCNNGA	3 cut(s)	275, 541, 675
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	4 cut(s)	348, 457, 479, 641
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	5 cut(s)	359, 378, 494, 521, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 200, 206, 591
HpyF3I	CTNAG	4 cut(s)	369, 387, 399, 498
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	525
Kzo9I	GATC	2 cut(s)	391, 598
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	3 cut(s)	503, 544, 597
MaeI	CTAG	2 cut(s)	534, 659
MaeII	ACGT	1 cut(s)	265
MalI	GATC	2 cut(s)	393, 600
MboI	GATC	2 cut(s)	391, 598
MboII	GAAGA	3 cut(s)	129, 660, 663
MluCI	AATT	8 cut(s)	46, 70, 278, 326, 421, 440, 450, 563
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	4 cut(s)	73, 108, 382, 493
MseI	TTAA	2 cut(s)	96, 621
MspA1I	CMGCKG	2 cut(s)	203, 386
MspI	CCGG	2 cut(s)	83, 131
MspR9I	CCNGG	2 cut(s)	84, 131
MwoI	GCNNNNNNNGC	4 cut(s)	11, 200, 206, 591
NciI	CCSGG	2 cut(s)	84, 131
NdeII	GATC	2 cut(s)	391, 598
NheI	GCTAGC	1 cut(s)	533
NlaIII	CATG	1 cut(s)	525
NlaIV	GGNNCC	1 cut(s)	630
NspI	RCATGY	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	134, 403, 512, 665
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	202, 587
PpuMI	RGGWCCY	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	117, 466
PspPPI	RGGWCCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	96, 621
SatI	GCNGC	2 cut(s)	201, 586
Sau3AI	GATC	2 cut(s)	391, 598
Sau96I	GGNCC	2 cut(s)	117, 466
ScrFI	CCNGG	2 cut(s)	84, 131
SfaNI	GCATC	3 cut(s)	503, 544, 597
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	8 cut(s)	46, 70, 278, 326, 421, 440, 450, 563
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	2 cut(s)	534, 659
StyD4I	CCNGG	2 cut(s)	82, 129
StyI	CCWWGG	2 cut(s)	637, 658
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	510
TasI	AATT	8 cut(s)	46, 70, 278, 326, 421, 440, 450, 563
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	4 cut(s)	134, 403, 512, 665
Tru1I	TTAA	2 cut(s)	96, 621
Tru9I	TTAA	2 cut(s)	96, 621
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	1 cut(s)	585
TspDTI	ATGAA	2 cut(s)	470, 516
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	4 cut(s)	70, 278, 326, 421
XceI	RCATGY	1 cut(s)	525
XmaJI	CCTAGG	1 cut(s)	658
XspI	CTAG	2 cut(s)	534, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.