Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Forward (+)

19319870 .. 19322686

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G211300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGATGTTTTTCGATTACCATTCCATTCACTACGTTTCTCTTCGTCTCTGCTCACCTCCTCCTTCAATTCTCTCCAACCGGGCCTCCCACCCAATCAAAACCCATATAAAAGGGTTTATCCTCTTTCATATTCATCTGTTACTCGCGTTGCTTTCAGACCCAGAAAGCAGTTGGTGCATTTGAAGGTACAGGCAACTGTTGCTGAAAAAGACAGAGACCAGCCAAAATGGTGGGAAAGAAGTGTTCCAAATATGGTTGACATTCATTCTACACAAGAATTTTTGAGTGCTTTAGGCCAAGCTGGTGATAGATTAGTTATTGTAGAATTCTATGGGACTTGGTGTGCTTCTTGCCGTGCATTATTTCCTAAGCTCTGCAGAACAGCTGAAGACCACCCTGAGATTTTATTCCTGAAAGTGAATTTTGACGAGAACAAGCCAATGTGCAAAAGTATGAACGTGAAGGTACTTCCCTATTTCCACTTTTATCGTGGAGCTGAGGGACAGCTTGAATCCTTTTCGTGTTCACTTGCTAAGTTCCAGAAGTTAAAGGATGCTATTGCATTACACAACACAGCTCGTTGCAGCATCGGCCCTCCAAAGGGAGTCGGAGATCTTATACTGGAACCTTCCTCAGTTCCGAAGGACAAGCCCTCGGAATCTGCTTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

226

Amino Acids

25.38

Weight (kDa)

9.23

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	281, 329, 424
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	192, 471
AfiI	CCNNNNNNNGG	2 cut(s)	604, 605
AgsI	TTSAA	3 cut(s)	70, 187, 515
AluBI	AGCT	6 cut(s)	305, 376, 389, 500, 511, 581
AluI	AGCT	6 cut(s)	305, 376, 389, 500, 511, 581
Alw26I	GTCTC	2 cut(s)	54, 213
AoxI	GGCC	3 cut(s)	85, 298, 595
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	3 cut(s)	281, 329, 424
AspS9I	GGNCC	2 cut(s)	85, 596
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	49, 320
BbsI	GAAGAC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	600
BceAI	ACGGC	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	54, 213
BfmI	CTRYAG	1 cut(s)	379
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	1 cut(s)	589
BlsI	GCNGC	1 cut(s)	590
Bme1390I	CCNGG	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	85, 596
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	547, 600
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	2 cut(s)	372, 501
BpuMI	CCSGG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 605
Bse1I	ACTGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	604, 605
BseMII	CTCAG	3 cut(s)	393, 492, 651
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	600
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	87, 300, 597
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	352, 519
BslI	CCNNNNNNNGG	2 cut(s)	604, 605
BsmAI	GTCTC	2 cut(s)	54, 213
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	352, 519
BsnI	GGCC	3 cut(s)	87, 300, 597
Bso31I	GGTCTC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	3 cut(s)	87, 300, 597
BspCNI	CTCAG	3 cut(s)	394, 493, 650
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	49
BstAPI	GCANNNNNTGC	2 cut(s)	178, 203
BstDEI	CTNAG	5 cut(s)	372, 402, 501, 537, 637
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	2 cut(s)	54, 213
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 203, 594
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	616
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	87, 300, 597
BtsCI	GGATG	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	85, 596
Csp6I	GTAC	2 cut(s)	191, 470
CviQI	GTAC	2 cut(s)	191, 470
DdeI	CTNAG	5 cut(s)	372, 402, 501, 537, 637
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	54
FaiI	YATR	8 cut(s)	109, 111, 133, 257, 336, 458, 623, 676
FaqI	GGGAC	2 cut(s)	352, 519
Fnu4HI	GCNGC	1 cut(s)	589
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	589
GluI	GCNGC	1 cut(s)	589
HaeIII	GGCC	3 cut(s)	87, 300, 597
HapII	CCGG	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	515, 609, 662
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	49, 320
Hpy166II	GTNNAC	2 cut(s)	262, 530
Hpy188I	TCNGA	4 cut(s)	161, 614, 645, 661
Hpy188III	TCNNGA	2 cut(s)	415, 544
Hpy8I	GTNNAC	2 cut(s)	262, 530
HpyAV	CCTTC	5 cut(s)	76, 181, 460, 640, 642
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	37, 462
HpyCH4V	TGCA	6 cut(s)	181, 362, 381, 450, 566, 588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 203, 594
HpyF3I	CTNAG	5 cut(s)	372, 402, 501, 537, 637
HpySE526I	ACGT	2 cut(s)	37, 462
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	9 cut(s)	96, 178, 179, 236, 291, 414, 428, 557, 611
Lsp1109I	GCAGC	1 cut(s)	600
LweI	GCATC	2 cut(s)	547, 600
MaeII	ACGT	2 cut(s)	37, 462
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	2 cut(s)	36, 404
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	4 cut(s)	70, 281, 329, 424
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	2 cut(s)	103, 592
MnlI	CCTC	8 cut(s)	70, 73, 98, 135, 496, 609, 646, 667
MseI	TTAA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	178, 203, 594
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	616
NlaIV	GGNNCC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	515, 662
PkrI	GCNGC	1 cut(s)	590
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	85, 596
PstI	CTGCAG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	192, 471
RsaNI	GTAC	2 cut(s)	191, 470
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	1 cut(s)	589
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	2 cut(s)	85, 596
SchI	GAGTC	1 cut(s)	618
ScrFI	CCNGG	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	547, 600
SfcI	CTRYAG	1 cut(s)	379
Sse9I	AATT	4 cut(s)	70, 281, 329, 424
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	40, 465
TaqI	TCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	70, 281, 329, 424
TfiI	GAWTC	2 cut(s)	515, 662
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TseI	GCWGC	1 cut(s)	588
TspDTI	ATGAA	5 cut(s)	120, 126, 257, 473, 660
XapI	RAATTY	3 cut(s)	281, 329, 424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	172, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.