Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038852.1

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Reverse (-)

4485 .. 5754

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038852.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgattgacatacattctactcaagaattcttgagtgctttaggtcaagctggagatagattagttattgcagaattctacggcacttggtgtggttcttgccgtgcattatttcctaagctctgcagaacagctgaggatcaccctgagattctattcctgaaagtgaattttgatgagaataagccaatgtgcaagagtatgaacgtgaaggtccttccctatttccacttttaccgtggatctgagggacagctggaatccttttcatgttcacttgctaagttccagaaaataaaggatgctattgaattacacaacactgctcgttgcagcatcggccctccaaagggtgttggagatcttaaacttgaaccttccttggttcagaaggacagaccctcagaatctgcttcagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

140

Amino Acids

15.63

Weight (kDa)

6.88

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	147, 250
AcsI	RAATTY	3 cut(s)	26, 74, 169
AcuI	CTGAAG	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	349, 350
AgsI	TTSAA	2 cut(s)	311, 374
AluBI	AGCT	4 cut(s)	50, 121, 134, 256
AluI	AGCT	4 cut(s)	50, 121, 134, 256
AlwI	GGATC	2 cut(s)	147, 250
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	3 cut(s)	26, 74, 169
AspS9I	GGNCC	2 cut(s)	214, 341
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	2 cut(s)	87, 97
BfmI	CTRYAG	1 cut(s)	124
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	214, 341
BmsI	GCATC	2 cut(s)	292, 345
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	2 cut(s)	117, 135
BpuEI	CTTGAG	2 cut(s)	6, 52
BsaJI	CCNNGG	2 cut(s)	238, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 350
BseDI	CCNNGG	2 cut(s)	238, 381
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	349, 350
BseMII	CTCAG	4 cut(s)	126, 138, 237, 417
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	349, 350
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	139, 242, 361
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	4 cut(s)	127, 139, 238, 416
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	2 cut(s)	147, 250
BssECI	CCNNGG	2 cut(s)	238, 381
BssMI	GATC	3 cut(s)	139, 242, 361
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	239
BstDEI	CTNAG	6 cut(s)	117, 135, 147, 246, 282, 403
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	142, 245, 364
BstMBI	GATC	3 cut(s)	139, 242, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	242, 361
BstYI	RGATCY	2 cut(s)	242, 361
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	214, 341
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	6 cut(s)	50, 121, 134, 187, 256, 342
CviKI_1	RGCY	6 cut(s)	50, 121, 134, 187, 256, 342
DdeI	CTNAG	6 cut(s)	117, 135, 147, 246, 282, 403
DpnI	GATC	3 cut(s)	141, 244, 363
DpnII	GATC	3 cut(s)	139, 242, 361
DraIII	CACNNNGTG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	2 cut(s)	26, 74
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	273
FaiI	YATR	4 cut(s)	11, 203, 271, 421
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	273
HinfI	GANTC	3 cut(s)	151, 260, 407
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	247, 390, 406
Hpy188III	TCNNGA	4 cut(s)	23, 31, 160, 289
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	4 cut(s)	205, 227, 385, 387
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	71, 107, 126, 195, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	6 cut(s)	117, 135, 147, 246, 282, 403
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	139, 242, 361
LpnPI	CCDG	5 cut(s)	36, 159, 173, 242, 302
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	292, 345
MaeII	ACGT	1 cut(s)	207
MalI	GATC	3 cut(s)	141, 244, 363
MboI	GATC	3 cut(s)	139, 242, 361
MflI	RGATCY	2 cut(s)	242, 361
MluCI	AATT	4 cut(s)	26, 74, 169, 311
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	130, 241, 354, 412
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	134, 256
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	3 cut(s)	139, 242, 361
NlaIII	CATG	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	151, 260, 407
PkrI	GCNGC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	214, 341
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	242, 361
PvuII	CAGCTG	2 cut(s)	134, 256
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	139, 242, 361
Sau96I	GGNCC	2 cut(s)	214, 341
SetI	ASST	8 cut(s)	46, 52, 123, 136, 210, 216, 258, 379
SfaNI	GCATC	2 cut(s)	292, 345
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	21, 31
SmoI	CTYRAG	2 cut(s)	21, 31
Sse9I	AATT	4 cut(s)	26, 74, 169, 311
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	210
TasI	AATT	4 cut(s)	26, 74, 169, 311
TfiI	GAWTC	3 cut(s)	151, 260, 407
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	218, 258
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	3 cut(s)	26, 74, 169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.